Name: Pontibacillus halophilus DSM 19796
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1388

Type strain:

Species: Pontibacillus halophilus

Culture col. no.: DSM 19796, CCTCC AA 207029, KCTC 13190, JSM 076056, CIP 110065

Strain history: CIP <- 2009, KCTC <- Y.G. Chen and H.D. Xiao, Jishou Univ., Hunan, China: strain JSM 076056

NCBI tax ID(s): 1385510 (strain), 516704 (species)

SI-ID 379418

KCTC 13190, DSM 19796, CIP 110065

Section

Pontibacillus halophilus DSM 19796 is an obligate aerobe, moderately halophilic, spore-forming bacterium that forms circular colonies and was isolated from sea urchin.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
mesophilic
moderately halophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Pontibacillus*
	Species	**Pontibacillus halophilus**
	Full Scientific Name (LPSN)	Pontibacillus halophilus Chen et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #23019]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #119817]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #23019]	Cell length	3.5-4.0 µm

[Ref.: #23019]	Cell width	0.6-0.9 µm

[Ref.: #23019]	Cell shape	rod-shaped
[Ref.: #119817]	Cell shape	ovoid-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #23019]	Motility	yes
[Ref.: #119817]	Motility	yes
[Ref.: #67771]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.306

[Ref.: #23019]	Flagellum arrangement	peritrichous
[Ref.: #67771]	Flagellum arrangement	peritrichous

[Ref.: #23019]	Colony size	2.0-3.0 mm
[Ref.: #23019]	Colony color	yellow
[Ref.: #23019]	Colony shape	circular
[Ref.: #23019]	Incubation period	3-5 days
[Ref.: #23019]	Cultivation medium used	MA supplemented with 5 % (w/v) NaCl

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8324]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #8324]

Culture medium growth

[Ref.: #8324]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8324]

Culture medium composition

expand / minimize

[Ref.: #23019]

Culture medium

MA supplemented with 5 % (w/v) NaCl

[Ref.: #23019]

Culture medium growth

[Ref.: #36868]

Culture medium

Marine agar (MA)

[Ref.: #36868]

Culture medium growth

[Ref.: #36868]

Culture medium composition

expand / minimize

[Ref.: #119817]

Culture medium

CIP Medium 13

[Ref.: #119817]

Culture medium growth

[Ref.: #119817]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8324]	growth	28 °C
[Ref.: #23019]	growth	15.0-40.0 °C
[Ref.: #23019]	optimum	25.0-30.0 °C
[Ref.: #36868]	growth	30 °C
[Ref.: #67771]	growth	25-30 °C

[Ref.: #8324]	Temperature range	mesophilic
[Ref.: #23019]	Temperature range	mesophilic
[Ref.: #36868]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23019]			optimum	7.0-8.0
[Ref.: #23019]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23019]	Oxygen tolerance	obligate aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #23019]	Spore description	ellipsoidal,subterminal,in swollen sporangia
[Ref.: #23019]	Type of spore	endospore
[Ref.: #23019]	Ability of spore formation	yes
[Ref.: #67771]	Type of spore	endospore
[Ref.: #67771]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #23019]

Halophily / tolerance level

moderately halophilic

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23019]	casein	-	hydrolysis
[Ref.: #23019]	D-fructose ChEBI	-	builds acid from
[Ref.: #23019]	D-galactose ChEBI	-	builds acid from
[Ref.: #23019]	D-glucose ChEBI	-	builds acid from
[Ref.: #23019]	D-mannitol ChEBI	-	builds acid from
[Ref.: #23019]	D-mannose ChEBI	+	builds acid from
[Ref.: #23019]	D-ribose ChEBI	+	builds acid from
[Ref.: #23019]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #23019]	D-xylose ChEBI	-	builds acid from
[Ref.: #23019]	dna ChEBI	-	hydrolysis
[Ref.: #23019]	esculin ChEBI	+	hydrolysis
[Ref.: #23019]	galactitol ChEBI	-	builds acid from
[Ref.: #23019]	gelatin ChEBI	+	hydrolysis
[Ref.: #23019]	glucose ChEBI	-	fermentation
[Ref.: #23019]	glycerol ChEBI	-	builds acid from
[Ref.: #23019]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #23019]	L-arabinose ChEBI	-	builds acid from
[Ref.: #23019]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #23019]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #23019]	lactose ChEBI	-	builds acid from
[Ref.: #23019]	maltose ChEBI	-	builds acid from
[Ref.: #23019]	melezitose ChEBI	-	builds acid from
[Ref.: #23019]	melibiose ChEBI	-	builds acid from
[Ref.: #23019]	myo-inositol ChEBI	-	builds acid from
[Ref.: #23019]	nitrate ChEBI	-	reduction
[Ref.: #119817]	nitrate ChEBI	-	reduction
[Ref.: #119817]	nitrite ChEBI	-	reduction
[Ref.: #23019]	raffinose ChEBI	-	builds acid from
[Ref.: #23019]	ribitol ChEBI	-	builds acid from
[Ref.: #23019]	salicin ChEBI	-	builds acid from
[Ref.: #23019]	starch ChEBI	+	builds acid from
[Ref.: #23019]	starch ChEBI	+	hydrolysis
[Ref.: #23019]	sucrose ChEBI	-	builds acid from
[Ref.: #23019]	trehalose ChEBI	-	builds acid from
[Ref.: #23019]	tween 80 ChEBI	-	hydrolysis
[Ref.: #23019]	urea ChEBI	-	hydrolysis
[Ref.: #23019]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #23019]	ampicillin ChEBI	yes	30	µg (disc)
[Ref.: #23019]	carbenicillin ChEBI	yes	30	µg (disc)
[Ref.: #23019]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #23019]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #23019]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #23019]	lincomycin ChEBI	no			yes	2	µg (disc)
[Ref.: #23019]	nalidixic acid ChEBI	yes	20	µg (disc)
[Ref.: #23019]	novobiocin ChEBI	yes	30	µg (disc)
[Ref.: #23019]	polymyxin b ChEBI	yes	30	µg (disc)
[Ref.: #23019]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #23019]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #23019]	tetracycline ChEBI	no			yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #23019]	acetoin ChEBI	no
[Ref.: #23019]	hydrogen sulfide ChEBI	no
[Ref.: #23019]	indole ChEBI	no
[Ref.: #119817]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #23019]		acetoin ChEBI	-
[Ref.: #23019]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #23019]	acid phosphatase	+/-	3.1.3.2
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #23019]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #23019]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #23019]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #23019]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #23019]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #23019]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #23019]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #23019]	beta-glucosidase	+/-	3.2.1.21
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #23019]	beta-glucuronidase	+	3.2.1.31
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #23019]	catalase	+	1.11.1.6
[Ref.: #119817]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #23019]	cytochrome oxidase	+	1.9.3.1
[Ref.: #23019]	esterase (C 4)	-
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #23019]	esterase lipase (C 8)	+
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #23019]	leucine arylamidase	-	3.4.11.1
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #23019]	lipase (C 14)	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #23019]	lysine decarboxylase	-	4.1.1.18
[Ref.: #23019]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #23019]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #23019]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119817]	oxidase	+
[Ref.: #23019]	phenylalanine deaminase	-	4.3.1.5
[Ref.: #23019]	trypsin	-	3.4.21.4
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119817]	urease	-	3.5.1.5
[Ref.: #23019]	valine arylamidase	-
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119817]	12338	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	chorismate metabolism	100	9 of 9
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	tetrahydrofolate metabolism	92.86	13 of 14
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	85.71	24 of 28
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	purine metabolism	80.85	76 of 94
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	pyrimidine metabolism	80	36 of 45
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	urea cycle	76.92	10 of 13
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	lysine metabolism	71.43	30 of 42
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	arginine metabolism	62.5	15 of 24
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	oxidative phosphorylation	61.54	56 of 91
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	tryptophan metabolism	57.89	22 of 38
[Ref.: #66794]	reductive acetyl coenzyme A pathway	57.14	4 of 7
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	lipid metabolism	54.84	17 of 31
[Ref.: #66794]	pentose phosphate pathway	54.55	6 of 11
[Ref.: #66794]	degradation of sugar acids	52	13 of 25
[Ref.: #66794]	ginsenoside metabolism	50	8 of 16
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	myo-inositol biosynthesis	50	5 of 10
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	histidine metabolism	48.28	14 of 29
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	d-xylose degradation	45.45	5 of 11
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	degradation of hexoses	44.44	8 of 18
[Ref.: #66794]	degradation of sugar alcohols	43.75	7 of 16
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	degradation of pentoses	42.86	12 of 28
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	ascorbate metabolism	27.27	6 of 22
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
[Ref.: #66794]	daunorubicin biosynthesis	22.22	2 of 9
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
[Ref.: #66794]	vitamin B12 metabolism	20.59	7 of 34
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8324]	Sample type/isolated from	sea urchin
[Ref.: #8324]	Geographic location (country and/or sea, region)	South China Sea, Leizhou Bay
[Ref.: #8324]	Country	China
[Ref.: #8324]	Country ISO 3 Code	CHN
[Ref.: #8324]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From sea water
[Ref.: #67771]	Geographic location (country and/or sea, region)	Guangdong Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #119817]	Sample type/isolated from	Sea urchin
[Ref.: #119817]	Geographic location (country and/or sea, region)	South
[Ref.: #119817]	Country	China
[Ref.: #119817]	Country ISO 3 Code	CHN
[Ref.: #119817]	Continent	Asia

[Ref.: #23019]	Enrichment culture	Difco marine agar 2216 (MA;pH 7.5), supplemented with 0-20 % (w/v) NaCl
[Ref.: #23019]	Enrichment culture duration	7-28 days
[Ref.: #23019]	Enrichment culture temperature	28.0 ̊C
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Echinodermata

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU583728 (>99% sequence identity) for Pontibacillus halophilus subclade from Microbeatlas

Aquatic Samples	20
Soil Samples	16
Animal Samples	6
Plant Samples	1
Total Samples	43

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8324]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119817]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8324]	Pontibacillus halophilus strain JSM 076056 16S ribosomal RNA gene, partial sequence	EU583728	1469	ENA	516704 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pontibacillus halophilus JSM 076056 = DSM 19796	GCA_000775595	contig	GenBank	1385510 tax ID	*
[Ref.: #66792]	Pontibacillus halophilus JSM 076056 = DSM 19796	GCA_000425205	scaffold	GenBank	1385510 tax ID	*
[Ref.: #66792]	Pontibacillus halophilus DSM 19796	1122964.4	wgs	PATRIC	1385510 tax ID	*
[Ref.: #66792]	Pontibacillus halophilus JSM 076056 = DSM 19796	1385510.3	wgs	PATRIC	1385510 tax ID	*
[Ref.: #66792]	Pontibacillus halophilus DSM 19796	2524023244	draft	JGI IMG/M	1385510 tax ID	*

[Ref.: #8324]	GC-content	45.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	45.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pontibacillus halophilus JSM 076056 = DSM 19796 DSM 19796 NCBI: GCA_000425205.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pontibacillus halophilus JSM 076056 = DSM 19796 DSM 19796 NCBI: GCA_000425205.1
[Ref.: #69480]	motile	yes	89.474	yes
[Ref.: #69480]	flagellated	yes	88.057	yes
[Ref.: #69480]	gram-positive	yes	91.149	yes
[Ref.: #69480]	anaerobic	no	99.084	yes
[Ref.: #69480]	aerobic	yes	96.413	yes
[Ref.: #69480]	halophile	yes	90.609	no
[Ref.: #69480]	spore-forming	yes	94.683	no
[Ref.: #69480]	thermophile	no	92.855	yes
[Ref.: #69480]	glucose-util	yes	86.656	no
[Ref.: #69480]	glucose-ferment	no	91.855	yes

Availability in culture collections External links

[Ref.: #8324]

Culture collection no.

DSM 19796, CCTCC AA 207029, KCTC 13190, JSM 076056, CIP 110065

[Ref.: #71039]

SI-ID 379418

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pontibacillus salicampi sp. nov., a moderately halophilic bacterium isolated from saltern soil.	Lee JC, Kim YS, Yun BS, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.066423-0	2014	*
Phylogeny	Pontibacillus yanchengensis sp. nov., a moderately halophilic bacterium isolated from salt field soil.	Yang Y, Zou Z, He M, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.023911-0	2010	*
Phylogeny	[Diversity of culturable bacteria associated with the sea urchin Hemicentrotus pulcherrimus from Naozhou Island].	Huang K, Zhang L, Liu Z, Chen Q, Peng Q, Li W, Cui X, Chen Y	Wei Sheng Wu Xue Bao		2009	*
Phylogeny	Pontibacillus litoralis sp. nov., a facultatively anaerobic bacterium isolated from a sea anemone, and emended description of the genus Pontibacillus.	Chen YG, Zhang YQ, Yi LB, Li ZY, Wang YX, Xiao HD, Chen QH, Cui XL, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.009910-0	2009	*
Phylogeny	Pontibacillus halophilus sp. nov., a moderately halophilic bacterium isolated from a sea urchin.	Chen YG, Zhang YQ, Xiao HD, Liu ZX, Yi LB, Shi JX, Zhi XY, Cui XL, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.002469-0	2009	*

References

#8324

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19796

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23019

Yi-Guang Chen,Yu-Qin Zhang,Huai-Dong Xiao,Zhu-Xiang Liu,Lang-Bo Yi,Jin-Xiao Shi,Xiao-Yang Zhi,Xiao-Long Cui,Wen-Jun Li: Pontibacillus halophilus sp. nov., a moderately halophilic bacterium isolated from a sea urchin. IJSEM 59: 1635 - 1639 2009 ( DOI 10.1099/ijs.0.002469-0 , PubMed 19542115 )

#36868 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71039

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID379418.1 )

#119817 Collection of Institut Pasteur ; Curators of the CIP; CIP 110065
* These data were automatically processed and therefore are not curated

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Pontibacillus halophilus JSM 076056 = DSM 19796 DSM 19796

Pontibacillus halophilus JSM 076056 = DSM 19796 DSM 19796

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