Lutibaculum baratangense (DSM 22728, CCUG 58046, KCTC 22669)

Name: Lutibaculum baratangense (DSM 22728, CCUG 58046, KCTC 22669)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13878

Type strain

Strain Designation AMV1

Culture col. no. DSM 22728 CCUG 58046 KCTC 22669 NBRC 105799 AMV1

NCBI tax ID(s) 1358440

Special Collections DSMZ CCUG KCTC Literature strains

History DSMZ <- S. Shivaji, CCMB; AMV1 <- P. A. Kumar

Links

Lutibaculum baratangense AMV1 is an aerobe, Gram-negative, motile bacterium that was isolated from mud volcano soil sample.

Gram-negative motile ovoid-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 411604

KCTC 22669,NBRC 105799,CCUG 58046

@ref 20215

Last LPSN update 2026-05-29 08:28:09

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Tepidamorphaceae

Genus Lutibaculum

Species Lutibaculum baratangense

Full scientific name Lutibaculum baratangense Anil Kumar et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30107	negative	1.75 µm	1 µm	ovoid-shaped

Pigmentation

30107

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30107	positive	growth	25-37
30107	positive	optimum	33.5
61568	positive	growth	30-37

Culture pH

@ref	Ability	Type	PH	PH range
30107	positive	optimum	8
30107	positive	growth	07-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30107	aerobe
61568	aerobe
125439	obligate aerobe	98.236

Spore formation

@ref	Spore formation	Confidence
125439		98.406

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30107	NaCl	positive	growth	<4 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30107	22599 ChEBI	arabinose	+	carbon source
30107	17057 ChEBI	cellobiose	+	carbon source
30107	28260 ChEBI	galactose	+	carbon source
30107	5417 ChEBI	glucosamine	+	carbon source
30107	17234 ChEBI	glucose	+	carbon source
30107	29987 ChEBI	glutamate	+	carbon source
30107	17716 ChEBI	lactose	+	carbon source
30107	17306 ChEBI	maltose	+	carbon source
30107	28053 ChEBI	melibiose	+	carbon source
30107	17632 ChEBI	nitrate	+	reduction
30107	28044 ChEBI	phenylalanine	+	carbon source
30107	33942 ChEBI	ribose	+	carbon source
30107	17822 ChEBI	serine	+	carbon source
30107	26986 ChEBI	threonine	+	carbon source
30107	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30107	catalase	+	1.11.1.6
30107	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Volcanic

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
16416	mud volcano soil sample		Middle Andaman, Baratang Island	India	IND	Asia
61568	Soil,mud volcano	2009-02-20	Middle Andamans,Baratang Island	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence FN297835 (>99% sequence identity) for Lutibaculum baratangense subclade from Microbeatlas

Aquatic Samples	444
Soil Samples	217
Animal Samples	381
Plant Samples	52
Total Samples	1094

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16416	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	LuBa1.0 assembly for Lutibaculum baratangense AMV1	contig	GCA_000496075	631454.5	2568526534	631454	70.31

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16416	Lutibaculum baratangense AMV1 partial 16S rRNA gene, type strain AMV1T	FN297835	1455		631454

GC content

@ref	GC-content (mol%)	Method
16416	70.5	thermal denaturation, midpoint method (Tm)
30107	70.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: LuBa1.0 assembly for Lutibaculum baratangense AMV1
NCBI: GCA_000496075

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.24	no
125439	gram_stain	BacteriaNetⓘ	negative	83.87	no
125439	motility	BacteriaNetⓘ	yes	46.29	no
125439	spore_formation	BacteriaNetⓘ	no	98.41	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lutibaculum pontilimi sp. nov., isolated from a tidal mudflat and emended description of the genus Lutibaculum.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijsem.0.003163	2018
Phylogeny	Butyratibacter algicola gen. nov., sp. nov., a marine bacterium from the culture broth of Picochlorum sp. 122.	Wang G, Wang Y, Su H, Wu H, Li T, Liang J, Huang W, Xiang W, Yu K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002081	2017
Phylogeny	Microbaculum marinum gen. nov., sp. nov., isolated from deep seawater.	Su Y, Han S, Wang R, Yu X, Fu G, Chen C, Zhang C, Li Y, Sun C, Wu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001647	2017
Phylogeny	Lutibaculum baratangense gen. nov., sp. nov., a proteobacterium isolated from a mud volcano.	Kumar PA, Srinivas TNR, Manasa P, Madhu S, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.036350-0	2011
Phylogeny	Lutibaculum baratangense gen. nov., sp. nov., a novel proteobacterium isolated from a mud volcano, Andamans, India.	Kumar AP, Srinivas TNR, Madhu S, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.027094-0	2010

References

#16416	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22728
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26463	IJSEM 2025 2012 ( DOI 10.1099/ijs.0.029488-0 , PubMed 22021574 )
#30107	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26463
#61568	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58046
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lutibaculum baratangense (DSM 22728, CCUG 58046, KCTC 22669)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000496075

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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