Chryseobacterium indologenes (CIP 103072, 638.75)

Name: Chryseobacterium indologenes (CIP 103072, 638.75)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 138769

Type strain

Strain Designation 638.75

Culture col. no. CIP 103072 638.75

NCBI tax ID(s) 253

Special Collections CIP

Links

Chryseobacterium indologenes 638.75 is a facultative anaerobe, mesophilic, Gram-negative prokaryote of the family Weeksellaceae.

Gram-negative rod-shaped facultative anaerobe mesophilic

Name and taxonomic classification

SI-ID 67809

CIP 103072

@ref 20215

Last LPSN update 2025-12-16 10:03:09

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium indologenes

Full scientific name Chryseobacterium indologenes (Yabuuchi et al. 1983) Vandamme et al. 1994

Synonyms (1)

Flavobacterium indologenes

BacDive ID	Other strains from **Chryseobacterium indologenes** (58)	Type strain
5671	C. indologenes DSM 16777, ATCC 29897, CCUG 14483, CDC 3716, ... (type strain)
134710	C. indologenes Carton, CIP 109969
134973	C. indologenes CIP 109967
135113	C. indologenes 590.83, CIP 100344
135152	C. indologenes 682.78, CIP 103065
135153	C. indologenes 279.75, CIP 103069
135157	C. indologenes R 852, CIP 103094
135158	C. indologenes R 851, CIP 103095
135159	C. indologenes R 627, CIP 103096
135188	C. indologenes 189.79, CIP 103055
135788	C. indologenes 33.78, B53981, CIP 78.48
135833	C. indologenes 522.84, CIP 100992
135857	C. indologenes 162-86, CIP 102215
136164	C. indologenes 729, 648.75, CIP 103074
136172	C. indologenes R 705, CIP 103102
136234	C. indologenes CIP 103626, ATCC 49471
137230	C. indologenes 2398, R 858, CIP 103092
137346	C. indologenes 469.83, CIP 100269
137815	C. indologenes 215.84, CIP 100761
137991	C. indologenes 419-86, CIP 102419
138406	C. indologenes R 760, CIP 103101
138609	C. indologenes 241.75, CIP 103068
139084	C. indologenes 792.84, CIP 101166
139440	C. indologenes 177-77, CIP 111041
139448	C. indologenes Millo, CIP 111085, CIP 200792
139449	C. indologenes Rouault 2401, CIP 111087, CIP 200799
139450	C. indologenes Big, CIP 111080, CIP 200737
139451	C. indologenes Kac, CIP 111083, CIP 200783
139452	C. indologenes Gallet, CIP 111084, CIP 200791
139478	C. indologenes CIP 111070, CIP 200648
139479	C. indologenes Lair, CIP 111074, CIP 200703
139512	C. indologenes Tchang, CIP 111068, CIP 200630
139513	C. indologenes Delvoix, CIP 111069, CIP 200634
139514	C. indologenes Ben, CIP 111073, CIP 200683
139553	C. indologenes Bordin, CIP 111079, CIP 200726
139599	C. indologenes Gouélian, CIP 109982
142408	C. indologenes CCUG 12408
143842	C. indologenes CCUG 21463
144077	C. indologenes CCUG 22795
144636	C. indologenes CCUG 25993
144828	C. indologenes CCUG 26680
147966	C. indologenes CCUG 34592
149934	C. indologenes CCUG 38711
150974	C. indologenes CCUG 42919
150985	C. indologenes CCUG 42938
151781	C. indologenes CCUG 44868
152178	C. indologenes CCUG 45982
152707	C. indologenes CCUG 47431
153574	C. indologenes CCUG 50232
154777	C. indologenes CCUG 55149
156350	C. indologenes CCUG 61253
156754	C. indologenes CCUG 64871
172960	C. indologenes CIP 109978, Van Dick
172961	C. indologenes R647, Peslerbe, CIP 109988
172962	C. indologenes Rouault 2398, CIP 111086, CIP 200798
175138	C. indologenes Dres_ChryseobactSp_12, DSM 107724
175139	C. indologenes Dres_ChryseobactSp_14, DSM 107732
176846	C. indologenes NiuAA5, DSM 114485

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
40518	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Composition	Medium link
40518	MEDIUM 3 - Columbia agar	Columbia agar (39.000 g);distilled water (1000.000 ml)
40518	CIP Medium 3		Medium recipe at CIP
40518	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
40518	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

40518

Oxygen tolerancefacultative anaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
40518	17632 ChEBI	nitrate	+	reduction
40518	16301 ChEBI	nitrite	+	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
40518	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
40518	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
40518	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
40518	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
40518	-	+	+	+	-	+	+	-	+	-	+	+	-	-	-	+	-	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
40518	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+	-	+	-	-	+	-	-	-	+	-	-	-	+/-	+/-	-	+	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
40518		Paris	France	FRA	Europe
40518	Human, Blood	Paris	France	FRA	Europe	1975

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
40518	1	Risk group (French classification)

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#40518	Collection of Institut Pasteur ; Curators of the CIP; CIP 103072
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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