Name: Microbulbifer salipaludis SM-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 138535

Type strain:

Species: Microbulbifer salipaludis

Strain Designation: SM-1

Culture col. no.: CIP 107899, JCM 11542, KCCM 41586

Strain history: CIP <- 2003, JCM <- 2002, Y. H. Park: strain SM-1

NCBI tax ID(s): 187980 (species)

SI-ID 100777

JCM 11542, CIP 107899

Special Collections

Section

Microbulbifer salipaludis SM-1 is a Gram-negative, rod-shaped bacterium of the family Microbulbiferaceae.

Gram-negative
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Microbulbiferaceae*
	Genus	*Microbulbifer*
	Species	**Microbulbifer salipaludis**
	Full Scientific Name (LPSN)	Microbulbifer salipaludis Yoon et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #39962]	Gram stain	negative

[Ref.: #39962]	Cell shape	rod-shaped

[Ref.: #39962]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #39962]

Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #39962]

Culture medium

CIP Medium 13

[Ref.: #39962]

Culture medium growth

[Ref.: #39962]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #39962]		growth	37 °C
[Ref.: #39962]		growth	10-41 °C
[Ref.: #39962]	no	growth	5 °C
[Ref.: #67770]		growth	37 °C

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #39962]		NaCl		growth	2-10	%
[Ref.: #39962]		NaCl	no	growth	0	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #39962]	esculin ChEBI	+	hydrolysis
[Ref.: #39962]	nitrate ChEBI	+	reduction
[Ref.: #39962]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #39962]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #39962]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #39962]	amylase	+
[Ref.: #39962]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #39962]	caseinase	+	3.4.21.50
[Ref.: #39962]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #39962]	gelatinase	+
[Ref.: #39962]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #39962]	lipase	+
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #39962]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #39962]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #39962]	oxidase	+
[Ref.: #39962]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #39962]	tryptophan deaminase	-
[Ref.: #39962]	tween esterase	-
[Ref.: #39962]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #39962]	10733	-	+	+	+	+	+	+	-	+	-	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Salt marsh around the junction of the Youngsan River and the Yellow Sea
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #39962]	Sample type/isolated from	Environment, Salt marsh
[Ref.: #39962]	Geographic location (country and/or sea, region)	Youngsan River
[Ref.: #39962]	Country	Republic of Korea
[Ref.: #39962]	Country ISO 3 Code	KOR
[Ref.: #39962]	Continent	Asia
[Ref.: #39962]	Isolation date	2000

[Ref.: #39962]	Geographic location (country and/or sea, region)	Youngsan River
[Ref.: #39962]	Country	Republic of Korea
[Ref.: #39962]	Country ISO 3 Code	KOR
[Ref.: #39962]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AF479688 (>99% sequence identity) for Microbulbifer from Microbeatlas

Aquatic Samples	58
Soil Samples	16
Animal Samples	3
Plant Samples	16
Total Samples	93

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #39962]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Microbulbifer salipaludis strain SM-1 16S ribosomal RNA gene, partial sequence	AF479688	1492	GenBank ENA	187980 tax ID

[Ref.: #67770]

GC-content

59 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #39962]

Culture collection no.

CIP 107899, JCM 11542, KCCM 41586

[Ref.: #95239]

SI-ID 100777

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbulbifer mangrovi sp. nov., a polysaccharide-degrading bacterium isolated from an Indian mangrove.	Vashist P, Nogi Y, Ghadi SC, Verma P, Shouche YS	Int J Syst Evol Microbiol	10.1099/ijs.0.042978-0	2012	*
Enzymology	Enzymatic properties and nucleotide and amino acid sequences of a thermostable beta-agarase from the novel marine isolate, JAMB-A94.	Ohta Y, Nogi Y, Miyazaki M, Li Z, Hatada Y, Ito S, Horikoshi K	Biosci Biotechnol Biochem	10.1271/bbb.68.1073	2004	*
Phylogeny	Microbulbifer salipaludis sp. nov., a moderate halophile isolated from a Korean salt marsh.	Yoon JH, Kim IG, Shin DY, Kang KH, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.02342-0	2003	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39962 Collection of Institut Pasteur ; Curators of the CIP; CIP 107899
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#95239

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100777.1 )

* These data were automatically processed and therefore are not curated

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