Microbulbifer salipaludis (CIP 107899, JCM 11542, KCCM 41586)

Name: Microbulbifer salipaludis (CIP 107899, JCM 11542, KCCM 41586)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 138535

Type strain

Strain Designation SM-1

Culture col. no. CIP 107899 JCM 11542 KCCM 41586 SM-1

NCBI tax ID(s) 187980

Special Collections JCM CIP

History Y.-H. Park SM-1. CIP <- 2003, JCM <- 2002, Y. H. Park: strain SM-1

Links

Microbulbifer salipaludis SM-1 is a mesophilic, Gram-negative, rod-shaped prokaryote of the family Microbulbiferaceae.

Gram-negative rod-shaped mesophilic 16S sequence

Name and taxonomic classification

SI-ID 100777

JCM 11542,CIP 107899

@ref 20215

Last LPSN update 2026-02-09 11:33:08

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Cellvibrionales

Family Microbulbiferaceae

Genus Microbulbifer

Species Microbulbifer salipaludis

Full scientific name Microbulbifer salipaludis Yoon et al. 2003

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
39962	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
39962	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
39962	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
39962	positive	growth	37	mesophilic
39962	positive	growth	10-41
39962	negative	growth	5
67770	positive	growth	37	mesophilic

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
39962	NaCl	positive	growth	2-10 %
39962	NaCl		growth	0 %

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
39962	4853 ChEBI	esculin	+	hydrolysis
39962	17632 ChEBI	nitrate	+	reduction
39962	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
39962	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
39962	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
39962	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
39962	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
39962	caseinase	+	3.4.21.50
39962	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
39962	gelatinase	+
39962	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
39962	lipase	+
68382	lipase (C 14)	+		from API zym
39962	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
39962	ornithine decarboxylase	-	4.1.1.17
39962	oxidase	+
39962	protease	+
68382	trypsin	+	3.4.21.4	from API zym
39962	tryptophan deaminase	-
39962	tween esterase	-
39962	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
39962	-	+	+	+	+	+	+	-	+	-	+	+	-	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
39962		Youngsan River	Republic of Korea	KOR	Asia
67770	Salt marsh around the junction of the Youngsan River and the Yellow Sea		Republic of Korea	KOR	Asia
39962	Environment, Salt marsh	Youngsan River	Republic of Korea	KOR	Asia	2000

Taxonmaps

69479

Global distribution of 16S sequence AF479688 (>99% sequence identity) for Microbulbifer from Microbeatlas

Aquatic Samples	58
Soil Samples	16
Animal Samples	3
Plant Samples	16
Total Samples	93

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
39962	1	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Microbulbifer salipaludis strain SM-1 16S ribosomal RNA gene, partial sequence	AF479688	1492		187980

GC content

@ref	GC-content (mol%)	Method
67770	59	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Enzymatic properties and nucleotide and amino acid sequences of a thermostable beta-agarase from the novel marine isolate, JAMB-A94.	Ohta Y, Nogi Y, Miyazaki M, Li Z, Hatada Y, Ito S, Horikoshi K	Biosci Biotechnol Biochem	10.1271/bbb.68.1073	2004
Phylogeny	Microbulbifer mangrovi sp. nov., a polysaccharide-degrading bacterium isolated from an Indian mangrove.	Vashist P, Nogi Y, Ghadi SC, Verma P, Shouche YS	Int J Syst Evol Microbiol	10.1099/ijs.0.042978-0	2012
Phylogeny	Microbulbifer salipaludis sp. nov., a moderate halophile isolated from a Korean salt marsh.	Yoon JH, Kim IG, Shin DY, Kang KH, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.02342-0	2003

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39962	Collection of Institut Pasteur ; Curators of the CIP; CIP 107899
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microbulbifer salipaludis (CIP 107899, JCM 11542, KCCM 41586)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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