Name: Marivita cryptomonadis CL-SK44
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13851

Type strain:

Species: Marivita cryptomonadis

Strain Designation: CL-SK44

Culture col. no.: DSM 21340, JCM 15447, KCCM 90070

Strain history: B. C. Cho CL-SK44.

NCBI tax ID(s): 505252 (species)

SI-ID 403128

DSM 21340

Special Collections

Section

Marivita cryptomonadis CL-SK44 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from culture marine phytoplankton Cryptomonas sp..

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Marivita*
	Species	**Marivita cryptomonadis**
	Full Scientific Name (LPSN)	Marivita cryptomonadis Hwang et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29071]	Gram stain	negative

[Ref.: #29071]	Cell length	2.7 µm

[Ref.: #29071]	Cell width	0.8 µm

[Ref.: #29071]	Cell shape	rod-shaped

[Ref.: #29071]	Motility	yes

[Ref.: #29071]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15626]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #15626]

Culture medium growth

[Ref.: #15626]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15626]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15626]	growth	28 °C
[Ref.: #29071]	growth	15-35 °C
[Ref.: #29071]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29071]			optimum	8
[Ref.: #29071]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29071]

Oxygen tolerance

aerobe

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29071]	arabinose ChEBI	+	carbon source
[Ref.: #29071]	cellobiose ChEBI	+	carbon source
[Ref.: #29071]	esculin ChEBI	+	hydrolysis
[Ref.: #29071]	glucose ChEBI	+	carbon source
[Ref.: #29071]	lactose ChEBI	+	carbon source
[Ref.: #29071]	trehalose ChEBI	+	carbon source
[Ref.: #29071]	tween 40 ChEBI	+	carbon source
[Ref.: #29071]	tween 80 ChEBI	+	carbon source
[Ref.: #29071]	xylose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29071]	acid phosphatase	+	3.1.3.2
[Ref.: #29071]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29071]	catalase	+	1.11.1.6
[Ref.: #29071]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15626]	Sample type/isolated from	culture marine phytoplankton Cryptomonas sp.
[Ref.: #15626]	Host species	Cryptomonas
[Ref.: #15626]	Country	Republic of Korea
[Ref.: #15626]	Country ISO 3 Code	KOR
[Ref.: #15626]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Culture of the marine phytoplankton Cryptomonas sp.
[Ref.: #67770]	Host species	Cryptomonas sp.
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Other	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU512919 (>99% sequence identity) for Marivita from Microbeatlas

Aquatic Samples	812
Soil Samples	109
Animal Samples	113
Plant Samples	7
Total Samples	1041

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15626]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15626]	Marivita cryptomonadis strain CL-SK44 16S ribosomal RNA gene, partial sequence	EU512919	1376	GenBank ENA	505252 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marivita cryptomonadis CL-SK44	GCA_002115725	contig	GenBank ENA	505252 tax ID	*
[Ref.: #66792]	Marivita cryptomonadis CL-SK44	2791354908	draft	JGI IMG/M	505252 tax ID	*

[Ref.: #15626]	GC-content	58.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29071]	GC-content	58.6 mol%

Availability in culture collections External links

[Ref.: #15626]

Culture collection no.

DSM 21340, JCM 15447, KCCM 90070

[Ref.: #83027]

SI-ID 403128

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation of Thalassobius mangrovi sp. nov., a novel bacterium in the family Rhodobacteraceae, from marine mangrove sediment.	Chen S, Zheng S, Zhang D, Hetharua B, Gui J, An X, Xu H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004801	2021	*
Phylogeny	Combined characterization of a new member of Marivita cryptomonadis strain LZ-15-2 isolated from cultivable phycosphere microbiota of highly toxic HAB dinoflagellate Alexandrium catenella LZT09.	Zhou X, Zhang XA, Jiang ZW, Yang X, Zhang XL, Yang Q	Braz J Microbiol	10.1007/s42770-021-00463-w	2021	*
Phylogeny	Marivita lacus sp. nov., isolated from a saline lake.	Zhong ZP, Liu Y, Hou TT, Liu HC, Zhou YG, Wang F, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.000195	2015	*
Phylogeny	Marivita cryptomonadis gen. nov., sp. nov. and Marivita litorea sp. nov., of the family Rhodobacteraceae, isolated from marine habitats.	Hwang CY, Bae GD, Yih W, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.005462-0	2009	*

References

#15626

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21340

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29071

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25501 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83027

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403128.1 )

#25501

IJSEM 1568 2009 ( DOI 10.1099/ijs.0.005462-0 , PubMed 19528201 )

* These data were automatically processed and therefore are not curated

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