Sediminimonas qiaohouensis | Type strain | DSM 21189, CCTCC AA 208033, KCTC 22349, YIM B024 | BacDiveID:13849

Strain identifier

BacDive ID: 13849

Type strain:

Species: Sediminimonas qiaohouensis

Culture col. no.: DSM 21189, CCTCC AA 208033, KCTC 22349, YIM B024

Strain history: <- X-L Cui, Yunnan Inst., China

NCBI tax ID(s): 1123247 (strain), 552061 (species)

SI-ID 402724

DSM 21189

Other strains from Sediminimonas qiaohouensis

S. qiaohouensis DSM 21190, CCTCC AA 208034, KCTC ...

Section

Sediminimonas qiaohouensis DSM 21189 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from ancient salt sediment from of a salt mine.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Sediminimonas*
	Species	**Sediminimonas qiaohouensis**
	Full Scientific Name (LPSN)	Sediminimonas qiaohouensis Wang et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29131]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #29131]	Cell length	2.5 µm

[Ref.: #29131]	Cell width	0.425 µm

[Ref.: #29131]	Cell shape	rod-shaped

[Ref.: #29131]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.008

Pigment production

yes

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15434]			growth	28 °C
[Ref.: #29131]			growth	15-37 °C
[Ref.: #29131]			optimum	29 °C
[Ref.: #67771]			growth	28 °C

[Ref.: #15434]	Temperature range	mesophilic
[Ref.: #29131]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29131]			optimum	7.75
[Ref.: #29131]			growth	6.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29131]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29131]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29131]		NaCl		growth	0.25-20	%
[Ref.: #29131]		NaCl		optimum	5.25	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29131]		alanine ChEBI	+	carbon source
[Ref.: #29131]		dextrin ChEBI	+	carbon source
[Ref.: #29131]		esculin ChEBI	+	hydrolysis
[Ref.: #29131]		fructose ChEBI	+	carbon source
[Ref.: #29131]		galactose ChEBI	+	carbon source
[Ref.: #29131]		gluconate ChEBI	+	carbon source
[Ref.: #29131]		glucosamine ChEBI	+	carbon source
[Ref.: #29131]		glucose ChEBI	+	carbon source
[Ref.: #29131]		glutamate ChEBI	+	carbon source
[Ref.: #29131]		glycerol ChEBI	+	carbon source
[Ref.: #29131]		maltose ChEBI	+	carbon source
[Ref.: #29131]		mannitol ChEBI	+	carbon source
[Ref.: #29131]		mannose ChEBI	+	carbon source
[Ref.: #29131]		nitrate ChEBI	+	reduction
[Ref.: #29131]		ornithine ChEBI	+	carbon source
[Ref.: #29131]		serine ChEBI	+	carbon source
[Ref.: #29131]		sucrose ChEBI	+	carbon source
[Ref.: #29131]		thymidine ChEBI	+	carbon source
[Ref.: #29131]		trehalose ChEBI	+	carbon source
[Ref.: #29131]		tween 20 ChEBI	+	carbon source
[Ref.: #29131]		uridine ChEBI	+	carbon source
		Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29131]		acid phosphatase	+	3.1.3.2
[Ref.: #29131]		alkaline phosphatase	+	3.1.3.1
[Ref.: #29131]		catalase	+	1.11.1.6
[Ref.: #29131]		cytochrome oxidase	+	1.9.3.1
[Ref.: #29131]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15434]	Sample type/isolated from	ancient salt sediment from of a salt mine
[Ref.: #15434]	Geographic location (country and/or sea, region)	Yunnan, Qiaohou
[Ref.: #15434]	Country	China
[Ref.: #15434]	Country ISO 3 Code	CHN
[Ref.: #15434]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From sediment from a salt mine
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

Global distribution of 16S sequence EU878003 (>99% sequence identity) for Sediminimonas qiaohouensis subclade from Microbeatlas

Aquatic Samples	996
Soil Samples	214
Animal Samples	49
Plant Samples	19
Total Samples	1278

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15434]	Sediminimonas qiaohouensis strain YIM B024 16S ribosomal RNA gene, partial sequence	EU878003	1368	ENA	552061 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sediminimonas qiaohouensis DSM 21189	GCA_000423645	scaffold	GenBank	1123247 tax ID	*
[Ref.: #66792]	Sediminimonas qiaohouensis DSM 21189	1123247.3	wgs	PATRIC	1123247 tax ID	*
[Ref.: #66792]	Sediminimonas qiaohouensis DSM 21189	2523533612	draft	JGI IMG/M	1123247 tax ID	*

[Ref.: #15434]	GC-content	63.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29131]	GC-content	63.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sediminimonas qiaohouensis DSM 21189 DSM 21189 NCBI: GCA_000423645.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sediminimonas qiaohouensis DSM 21189 DSM 21189 NCBI: GCA_000423645.1
[Ref.: #69480]	motile	no	79.086	yes
[Ref.: #69480]	flagellated	no	90.314	yes
[Ref.: #69480]	gram-positive	no	97.8	yes
[Ref.: #69480]	anaerobic	no	98.224	no
[Ref.: #69480]	aerobic	yes	87.481	yes
[Ref.: #69480]	halophile	yes	88.35	yes
[Ref.: #69480]	spore-forming	no	96.709	no
[Ref.: #69480]	thermophile	no	82.546	yes
[Ref.: #69480]	glucose-util	yes	52.551	no
[Ref.: #69480]	glucose-ferment	no	90.643	no

Availability in culture collections External links

Culture collection no.

DSM 21189, CCTCC AA 208033, KCTC 22349, YIM B024

SI-ID 402724

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sediminimonas qiaohouensis gen. nov., sp. nov., a member of the Roseobacter clade in the order Rhodobacterales.	Wang YX, Wang ZG, Liu JH, Chen YG, Zhang XX, Wen ML, Xu LH, Peng Q, Cui XL	Int J Syst Evol Microbiol	10.1099/ijs.0.006965-0	2009	*

References

#15434

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21189

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29131

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25557 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83025

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402724.1 )

#25557

IJSEM 1591 2009 ( DOI 10.1099/ijs.0.006965-0 , PubMed 19528203 )

* These data were automatically processed and therefore are not curated

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