Polaribacter franzmannii (CIP 106480, ATCC 700399, 301)

Name: Polaribacter franzmannii (CIP 106480, ATCC 700399, 301)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 138455

Type strain

Strain Designation 301

Culture col. no. CIP 106480 ATCC 700399 301

NCBI tax ID(s) 1248440 37453

Special Collections CIP

History 2000, J.T. Staley, Univ. Washington, Seattle, USA: strain 301 CIP <- 2000, JT. Staley, Washington Univ., Seattle, Washington, USA: strain 301

Links

Polaribacter franzmannii 301 is a Gram-negative, rod-shaped bacterium of the family Flavobacteriaceae.

Gram-negative rod-shaped Bacteria

Name and taxonomic classification

SI-ID 69658

CIP 106480,ATCC 700399

@ref 20215

Last LPSN update 2026-02-09 11:33:07

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Polaribacter

Species Polaribacter franzmannii

Full scientific name Polaribacter franzmannii Gosink et al. 1998

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438			93
125438	negative		96.539
125439	negative		99.8
39788	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
39788	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
39788	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
39788	positive	growth	8
39788	positive	growth	5
39788	negative	growth	15
39788	negative	growth	22
39788	negative	growth	30
39788	negative	growth	37
39788	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.143
125439	obligate aerobe	96.6

Spore formation

@ref	Spore formation	Confidence
125438		90.833
125439		96.1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
39788	16947 ChEBI	citrate	-	carbon source
39788	4853 ChEBI	esculin	-	hydrolysis
39788	17234 ChEBI	glucose	-	fermentation
39788	17716 ChEBI	lactose	-	fermentation
39788	17632 ChEBI	nitrate	-	reduction
39788	16301 ChEBI	nitrite	-	reduction
39788	132112 ChEBI	sodium thiosulfate	-	builds gas from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
39788	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
39788	15688 ChEBI	acetoin	-
39788	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
39788	alcohol dehydrogenase	-	1.1.1.1
39788	beta-galactosidase	-	3.2.1.23
39788	caseinase	-	3.4.21.50
39788	catalase	+	1.11.1.6
39788	gamma-glutamyltransferase	-	2.3.2.2
39788	gelatinase	+/-
39788	lecithinase	-
39788	lipase	-
39788	lysine decarboxylase	-	4.1.1.18
39788	ornithine decarboxylase	-	4.1.1.17
39788	oxidase	+/-
39788	phenylalanine ammonia-lyase	-	4.3.1.24
39788	protease	-
39788	tryptophan deaminase	-
39788	tween esterase	+
39788	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
39788			Antarctica	ATA	Antarctica
39788	Environment, Sea ice	McMurdo Sound	Antarctica	ATA	Antarctica

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
39788	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	BV-BRC accession	NCBI tax ID	Score
66792	Polaribacter franzmannii ATCC 700399	contig	1248440.3	1248440	15.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Polaribacter franzmannii ATCC 700399
PATRIC: 1248440.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	motility	BacteriaNetⓘ	no	62.00	no
125439	spore_formation	BacteriaNetⓘ	no	96.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Polaribacter franzmannii ATCC 700399
PATRIC: 1248440.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.54	no
125438	anaerobic	anaerobicⓘ	no	96.15	no
125438	spore-forming	spore-formingⓘ	no	90.83	no
125438	aerobic	aerobicⓘ	yes	91.14	no
125438	thermophilic	thermophileⓘ	no	96.47	yes
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga-Flavobacterium-Bacteroides group and reclassification of 'Flectobacillus glomeratus' as Polaribacter glomeratus comb. nov.	Gosink JJ, Woese CR, Staley JT	Int J Syst Bacteriol	10.1099/00207713-48-1-223	1998

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39788	Collection of Institut Pasteur ; Curators of the CIP; CIP 106480
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Polaribacter franzmannii (CIP 106480, ATCC 700399, 301)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome-based predictions

Predictions

Literature

Literature

References

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