Rhizobium leguminosarum (CIP 106959, ATCC 10004, IAM 12609)

Name: Rhizobium leguminosarum (CIP 106959, ATCC 10004, IAM 12609)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 138443

Type strain

Strain Designation 3Hoq18

Culture col. no. CIP 106959 ATCC 10004 IAM 12609 OUT 30008 IFO 14778 3 more

NCBI tax ID(s) 384

Special Collections DSMZ CIP

History <- C. Vereecke, LMG; LMG 14904 <- 1994, American Type Culture Collection (ATCC), Bacteriology Program (Rhizobium leguminosarum biovar. viceae) <- L.Erdman (Rhizobium leguminosarum) CIP <- 2001, IFO <- Toyama Dept Biol. <- H. Oyaizu <- IAM <- ATCC <- L.W. Erdman

Links

Rhizobium leguminosarum 3Hoq18 is a Gram-negative, motile, rod-shaped bacterium of the family Rhizobiaceae.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 4782

LMG 11200,ATCC 10004,ATCC 10313,CCRC 13517,IAM 12609,IFO 14778,LMG 14904,LMG 8817,NCIMB 11478,NCIB 11478,CIP 106959,VKM B-1964,CECT 4113,KCTC 1537,NBRC 14778,HAMBI 12,BCRC 13517,CCT 5087,ICMP 13689,KACC 10640,JCM 20680,CFBP 6721,DSM 30132,NCPPB 4139,DSM 106839,CCUG 56776

@ref 20215

Last LPSN update 2026-02-09 11:33:07

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Rhizobiaceae

Genus Rhizobium

Species Rhizobium leguminosarum

Full scientific name Rhizobium leguminosarum (Frank 1879) Frank 1889 (Approved Lists 1980)

Synonyms (3)

"Schinzia leguminosarum"
Rhizobium indigoferae
Rhizobium trifolii

BacDive ID	Other strains from **Rhizobium leguminosarum** (15)	Type strain
13588	R. leguminosarum DSM 1980, TAL 381
13590	R. leguminosarum ANU618, pBR1AN, DSM 5206
13591	R. leguminosarum LPR5035, pRtr5a::Tn5, DSM 5207
13592	R. leguminosarum RCR 3622, DSM 6039, ATCC 35179, PDDCC 6745
13593	R. leguminosarum 3D1K2, DSM 6040, ATCC 14479
13594	R. leguminosarum 3D1q25a, DSM 6041, ATCC 14484
13595	R. leguminosarum NZ 29, DSM 6042, ATCC 35180, PDDCC 1309
13596	R. leguminosarum DSM 6043, ATCC 35172, PDDCC 5943, NZP 5225
13597	R. leguminosarum 175F1, DSM 6044, ATCC 35282
13598	R. leguminosarum 92A3, DSM 6045, ATCC 35643, TAL 634
13599	R. leguminosarum 3HOa1, DSM 30133, ATCC 11444
13600	R. leguminosarum 3D1k5, DSM 30138, ATCC 10328
13601	R. leguminosarum 3D1r1, DSM 30139, ATCC 14481
13602	R. leguminosarum 3D1k22a, DSM 30141, ATCC 14480, JCM 20684, ...
13603	R. leguminosarum 580, DSM 30143, DSM 60273

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		99.3
125438	negative		99
39741	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
64388	Rhizobium medium (DSMZ Medium 1848)	Medium recipe provided by DSMZ
64388	RHIZOBIUM MEDIUM (DSMZ Medium 98)	Medium recipe at MediaDive	Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
64388	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
39741	MEDIUM 296 - for Rhizobium		Distilled water make up to (800.000 ml);Agar (15.000 g);Yeast extract (1.000 g);Mannitol (10.000 g);Earth extract - M0541 (200.000 ml)
39741	CIP Medium 296	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
39741	positive	growth	30
39741	positive	growth	25-37
39741	negative	growth	10
39741	negative	growth	41
39741	negative	growth	45
64388	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99

Spore formation

@ref	Spore formation	Confidence
125439		97.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
39741	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
39741	16947 ChEBI	citrate	-	carbon source
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
39741	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
39741	606565 ChEBI	hippurate	-	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
39741	17632 ChEBI	nitrate	-	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
39741	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
39741	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
39741	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
39741	15688 ChEBI	acetoin		-
39741	17234 ChEBI	glucose			-
68369	35581 ChEBI	indole	-			from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
39741	alcohol dehydrogenase	-	1.1.1.1
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
39741	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
39741	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
39741	gamma-glutamyltransferase	+	2.3.2.2
39741	gelatinase	-
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
39741	lysine decarboxylase	-	4.1.1.18
39741	ornithine decarboxylase	-	4.1.1.17
39741	oxidase	+
39741	phenylalanine ammonia-lyase	-	4.3.1.24
39741	tryptophan deaminase	-
39741	urease	+	3.5.1.5
68369	urease	+	3.5.1.5	from API 20NE

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
64388	-	-	-	-	-	+	-	-	+/-	-	+	-	-	-	-	+	+	+/-	-	-
39741	-	+	-	-	-	+	+	-	+	-	+	+	-	+	-	+	+	+	+	+

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
64388	-	-	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
39741	not determinedn.d.	+/-	-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	-	+/-	-	+/-	-	-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	-	+/-	+/-	-	-	+/-	-	-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
39741	not determinedn.d.	+	+	+	-	+	-	+	+	-	-	+	+	-	-	-	+	+	-	+	+	-	+	-	+	+	-	-	-	-	-	-	+	+	-	-	+	+	+	-	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Geographic location	Sample type
64388	country of origin unknown
39741		Effective nodules of Pisum sativum

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64388	1	Risk group (German classification)
39741	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3384264v1 assembly for Rhizobium leguminosarum ATCC 10004	contig	GCA_033842645	384.1044		384	78.38
66792	ASM1420212v1 assembly for Rhizobium leguminosarum DSM 106839	scaffold	GCA_014202125	384.421	2861339494	384	61.68

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
124043	Rhizobium leguminosarum strain LMG 14904 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence	AF345271	1232	384
124043	Rhizobium leguminosarum partial 16S rRNA gene, strain LMG 14904	AM181757	1422	384
124043	Rhizobium leguminosarum gene for 16S rRNA, strain: IAM 12609.	D12782	1434	384
124043	Rhizobium leguminosarum gene for 16S rRNA, complete sequence, type strain: IAM 12609.	D14513	1475	384
124043	Rhizobium leguminosarum bv. viciae 16S ribosomal RNA gene, partial sequence.	U29386	1423	754774

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Rhizobium leguminosarum DSM 106839
NCBI: GCA_014202125

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.90	no
125439	motility	BacteriaNetⓘ	yes	55.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rhizobium leguminosarum DSM 106839
NCBI: GCA_014202125.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	93.53	no
125438	aerobic	aerobicⓘ	yes	85.31	no
125438	spore-forming	spore-formingⓘ	no	88.96	no
125438	thermophilic	thermophileⓘ	no	99.25	no
125438	flagellated	motile2+ⓘ	yes	74.71	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Industrial wastewater as raw material for exopolysaccharide production by Rhizobium leguminosarum.	Sellami M, Oszako T, Miled N, Ben Rebah F.	Braz J Microbiol	10.1590/s1517-838246220140153	2015
Enzymology	Cell-to-cell signaling in the symbiotic nitrogen-fixing bacterium Rhizobium leguminosarum: autoinduction of a stationary phase and rhizosphere-expressed genes.	Gray KM, Pearson JP, Downie JA, Boboye BE, Greenberg EP.	J Bacteriol	10.1128/jb.178.2.372-376.1996	1996
	Characterization, distribution, and localization of ISRl2, and insertion sequence element isolated from Rhizobium leguminosarum bv. viciae.	Mazurier SI, Rigottier-Gois L, Amarger N.	Appl Environ Microbiol	10.1128/aem.62.2.685-693.1996	1996
Enzymology	Analysis of stable low-molecular-weight RNA profiles of members of the family Rhizobiaceae.	Velazquez E, Cruz-Sanchez JM, Mateos PF, Martinez-Molina E.	Appl Environ Microbiol	10.1128/aem.64.4.1555-1559.1998	1998
Metabolism	Lipid A biosynthesis in Rhizobium leguminosarum: role of a 2-keto-3-deoxyoctulosonate-activated 4' phosphatase.	Price NP, Jeyaretnam B, Carlson RW, Kadrmas JL, Raetz CR, Brozek KA.	Proc Natl Acad Sci U S A	10.1073/pnas.92.16.7352	1995
	Genetic Structure of Rhizobium leguminosarum biovar trifolii and viciae Populations Found in Two Oregon Soils under Different Plant Communities.	Strain SR, Leung K, Whittam TS, de Bruijn FJ, Bottomley PJ.	Appl Environ Microbiol	10.1128/aem.60.8.2772-2778.1994	1994
Metabolism	RNase III processing of intervening sequences found in helix 9 of 23S rRNA in the alpha subclass of Proteobacteria.	Evguenieva-Hackenberg E, Klug G.	J Bacteriol	10.1128/jb.182.17.4719-4729.2000	2000
	Phylogeny and Phylogeography of Rhizobial Symbionts Nodulating Legumes of the Tribe Genisteae.	Stepkowski T, Banasiewicz J, Granada CE, Andrews M, Passaglia LMP.	Genes (Basel)	10.3390/genes9030163	2018
	Expression by Soil Bacteria of Nodulation Genes from Rhizobium leguminosarum biovar trifolii.	Jarvis BD, Ward LJ, Slade EA.	Appl Environ Microbiol	10.1128/aem.55.6.1426-1434.1989	1989
Enzymology	Sequence analysis of the cryptic plasmid pMG101 from Rhodopseudomonas palustris and construction of stable cloning vectors.	Inui M, Roh JH, Zahn K, Yukawa H.	Appl Environ Microbiol	10.1128/aem.66.1.54-63.2000	2000
	Variability among Rhizobium Strains Originating from Nodules of Vicia faba.	van Berkum P, Beyene D, Vera FT, Keyser HH.	Appl Environ Microbiol	10.1128/aem.61.7.2649-2653.1995	1995
Metabolism	Metabolism of some polyols by Rhizobium meliloti.	Martinez De Drets G, Arias A.	J Bacteriol	10.1128/jb.103.1.97-103.1970	1970
Phylogeny	Numerical taxonomy and ecology of petroleum-degrading bacteria.	Austin B, Calomiris JJ, Walker JD, Colwell RR.	Appl Environ Microbiol	10.1128/aem.34.1.60-68.1977	1977
	Characterizing indigenous plant growth promoting bacteria and their synergistic effects with organic and chemical fertilizers on wheat (Triticum aestivum).	Asghar I, Ahmed M, Farooq MA, Ishtiaq M, Arshad M, Akram M, Umair A, Alrefaei AF, Jat Baloch MY, Naeem A.	Front Plant Sci	10.3389/fpls.2023.1232271	2023
Enzymology	Coffea arabica L., a new host plant for Acetobacter diazotrophicus, and isolation of other nitrogen-fixing acetobacteria.	Jimenez-Salgado T, Fuentes-Ramirez LE, Tapia-Hernandez A, Mascarua-Esparza MA, Martinez-Romero E, Caballero-Mellado J.	Appl Environ Microbiol	10.1128/aem.63.9.3676-3683.1997	1997
Metabolism	Atypical processing in domain III of 23S rRNA of Rhizobium leguminosarum ATCC 10004(T) at a position homologous to an rRNA fragmentation site in protozoa.	Klein F, Samorski R, Klug G, Evguenieva-Hackenberg E	J Bacteriol	10.1128/JB.184.12.3176-3185.2002	2002
Phylogeny	Classification of Austrian rhizobia and the Mexican isolate FL27 obtained from Phaseolus vulgaris L. as Rhizobium gallicum.	Sessitsch A, Ramirez-Saad H, Hardarson G, Akkermans AD, de Vos WM	Int J Syst Bacteriol	10.1099/00207713-47-4-1097	1997
Phylogeny	Phylogenetic position of Rhizobium sp. strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes.	Eardly BD, Young JP, Selander RK	Appl Environ Microbiol	10.1128/aem.58.6.1809-1815.1992	1992
Phylogeny	A new Rhizobium species isolated from the water of a crater lake, description of Rhizobium aquaticum sp. nov.	Mathe I, Toth E, Mentes A, Szabo A, Marialigeti K, Schumann P, Felfoldi T	Antonie Van Leeuwenhoek	10.1007/s10482-018-1110-0	2018
Phylogeny	Rhizobium mesosinicum sp. nov., isolated from root nodules of three different legumes.	Lin DX, Chen WF, Wang FQ, Hu D, Wang ET, Sui XH, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.006387-0	2009
Phylogeny	Revision of the taxonomic status of the species Rhizobium leguminosarum (Frank 1879) Frank 1889AL, Rhizobium phaseoli Dangeard 1926AL and Rhizobium trifolii Dangeard 1926AL. R. trifolii is a later synonym of R. leguminosarum. Reclassification of the strain R. leguminosarum DSM 30132 (=NCIMB 11478) as Rhizobium pisi sp. nov.	Ramirez-Bahena MH, Garcia-Fraile P, Peix A, Valverde A, Rivas R, Igual JM, Mateos PF, Martinez-Molina E, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.65621-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39741	Collection of Institut Pasteur ; Curators of the CIP; CIP 106959
#64388	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106839
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rhizobium leguminosarum (CIP 106959, ATCC 10004, IAM 12609)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_033842645

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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