Roseinatronobacter bogoriensis (DSM 18756, ATCC 700920, LBB 1)

Name: Roseinatronobacter bogoriensis (DSM 18756, ATCC 700920, LBB 1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13827

Type strain

Culture col. no. DSM 18756 ATCC 700920 LBB 1

NCBI tax ID(s) 1188254 119542 3161156

Special Collections DSMZ

History <- M. T. Madigan, Dept. Microbiology, Southern Illinois Univ., Carbondale, USA; LBB1

Links

Roseinatronobacter bogoriensis DSM 18756 is a bacterium that was isolated from marine sediment .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 45448

ATCC 700920,DSM 18756

@ref 20215

Last LPSN update 2026-02-09 11:21:15

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Paracoccaceae

Genus Roseinatronobacter

Species Roseinatronobacter bogoriensis

Full scientific name Roseinatronobacter bogoriensis (Milford et al. 2001) Hu et al. 2024

Synonyms (2)

Roseinatronobacter bogoriensis
Rhodobaca bogoriensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.5
125439	negative	98

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7604	RV5 MEDIUM (DSMZ Medium 1147)		Medium recipe at MediaDive	Name: RV5 MEDIUM (DSMZ Medium 1147) Composition: NaCl 15.0 g/l DL-Malic acid 4.0 g/l BICINE buffer 1.6317 g/l K2HPO4 1.0 g/l NH4Cl 0.52 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.075 g/l EDTA 0.0052 g/l FeCl2 x 4 H2O 0.0015 g/l Thiamine 0.001 g/l CoCl2 x 6 H2O 0.00019 g/l Na2MoO4 x 2 H2O 0.000188 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Biotin 3e-05 g/l VOSO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2.5e-05 g/l Vitamin B12 2e-05 g/l CuCl2 x 2 H2O 1.7e-05 g/l H3BO3 6e-06 g/l NaHSeO3 2e-06 g/l Na2WO4 x 2 H2O 2e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7604	positive	growth	35

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.8

Spore formation

@ref	Spore formation	Confidence
125438		93.554
125439		97.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7604	marine sediment (Lake Bogoria)	Kenya, African Rift Valley	Kenya	KEN	Africa

Taxonmaps

69479

Global distribution of 16S sequence AF248638 (>99% sequence identity) for Rhodobaca from Microbeatlas

Aquatic Samples	120
Soil Samples	20
Animal Samples	24
Plant Samples	3
Total Samples	167

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7604	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1419766v1 assembly for Roseinatronobacter bogoriensis DSM 18756 LBB1	scaffold	GCA_014197665	1188254.4	2838091430	1188254	74.06
66792	ASM436663v1 assembly for Roseinatronobacter bogoriensis DSM 18756	scaffold	GCA_004366635	1188254.3	2795385466	1188254	73.06

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7604	Rhodobaca bogoriensis 16S ribosomal RNA gene, partial sequence	AF248638	1457		1188254

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Rhodobaca bogoriensis DSM 18756
NCBI: GCA_004366635

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.00	no
125439	motility	BacteriaNetⓘ	yes	74.60	no
125439	spore_formation	BacteriaNetⓘ	no	97.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rhodobaca bogoriensis DSM 18756 DSM 18756
NCBI: GCA_004366635.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	82.41	no
125438	aerobic	aerobicⓘ	yes	75.17	no
125438	spore-forming	spore-formingⓘ	no	93.55	no
125438	thermophilic	thermophileⓘ	no	98.11	yes
125438	flagellated	motile2+ⓘ	yes	62.98	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genetic and Nutritional Dynamics of SynCom in Suppressing Apple Fire Blight	Lee Y, Ko Y, Kwak Y.	Plant Pathol J		2025
	Anaerobic 3-methylhopanoid production by an acidophilic photosynthetic purple bacterium.	Mayer MH, Parenteau MN, Kempher ML, Madigan MT, Jahnke LL, Welander PV.	Arch Microbiol	10.1007/s00203-021-02561-7	2021
	Validation List no. 219. Valid publication of new names and new combinations effectively published outside the IJSEM.	Oren A, Goker M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006452	2024
Genetics	Taxonomic, genomic, and ecological insights into a novel Flavobacteriaceae strain from coastal tidal flats.	Wang H, Liu J, Guo Y, Chen Y, Zhang C, He S, Zhang W, Ding L.	BMC Microbiol	10.1186/s12866-025-04069-2	2025
Enzymology	Distribution and origin of oxygen-dependent and oxygen-independent forms of Mg-protoporphyrin monomethylester cyclase among phototrophic proteobacteria.	Boldareva-Nuianzina EN, Blahova Z, Sobotka R, Koblizek M.	Appl Environ Microbiol	10.1128/aem.00104-13	2013
	Structure of the dimeric RC-LH1-PufX complex from Rhodobaca bogoriensis investigated by electron microscopy.	Semchonok DA, Chauvin JP, Frese RN, Jungas C, Boekema EJ	Philos Trans R Soc Lond B Biol Sci	10.1098/rstb.2012.0063	2012
	Accumulation of unusual carotenoids in the spheroidene pathway, demethylspheroidene and demethylspheroidenone, in an alkaliphilic purple nonsulfur bacterium Rhodobaca bogoriensis.	Takaichi S, Jung DO, Madigan MT	Photosynth Res	10.1023/A:1010666406176	2001
	Genome-based analysis of the family Paracoccaceae and description of Ostreiculturibacter nitratireducens gen. nov., sp. nov., isolated from an oyster farm on a tidal flat.	Huang Z, Li M, Oren A, Lai Q.	Front Microbiol	10.3389/fmicb.2024.1376777	2024
Phylogeny	Description of Labrys sedimenti sp. nov., isolated from a diclofenac-degrading enrichment culture, and genome-based reclassification of Labrys portucalensis as a later heterotypic synonym of Labrys neptuniae.	Csepanyi A, Tancsics A, Papai M, Baka E, Toth E, Boka K, Daood H, Szabo I, Kriszt B.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006778	2025
Phylogeny	Rhabdonatronobacter sediminivivens gen. nov., sp. nov. isolated from the sediment of Hutong Qagan Soda Lake.	Zhou H, Yang M, Xue Q, Kumar S, Zhang S, Zhou J, Zhao D, Xiang H	Arch Microbiol	10.1007/s00203-022-02758-4	2022
Phylogeny	Alkalilacustris brevis gen. nov., sp. nov., isolated from a soda lake.	Zhang R, Ju Z, Han S, Hou X, Yu Y, Zhang X, Ye Y, Sun C, Zhang G, Wu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003373	2019
Phylogeny	Rhodobaca bogoriensis gen. nov. and sp. nov., an alkaliphilic purple nonsulfur bacterium from African Rift Valley soda lakes.	Milford AD, Achenbach LA, Jung DO, Madigan MT	Arch Microbiol	10.1007/s002030000166	2000

References

#7604	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18756
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Roseinatronobacter bogoriensis (DSM 18756, ATCC 700920, LBB 1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014197665

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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