Name: Novispirillum itersonii Giesberger
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 138248

Type strain:

Species: Novispirillum itersonii

Strain Designation: Giesberger

Culture col. no.: CIP 105798, ATCC 12639, NCIMB 9070, NRRL B-2053, JCM 21278, CCUG 13727, IAM 14720, IAM 15031, IFO 15648, JCM 21494, LMG 4337, NBRC 15648

Strain history: CIP <- 1998, ATCC <- M.A. Williams: strain Giesberger

NCBI tax ID(s): 189 (species)

SI-ID 898

LMG 4337, ATCC 12639, CCUG 13727, NCIB 9070, NRRL B-2053, CIP 105798, NCIMB 9070, IFO15648, IAM 14720, NBRC 15648, CCUG 49447, IAM 15031, CDBB 140, JCM 21278, JCM 21494

Other strains from Novispirillum itersonii

N. itersonii DSM 9159, ATCC 11331, NCIMB 9071, ...

Section

Novispirillum itersonii Giesberger is an obligate aerobe, mesophilic, motile bacterium that was isolated from Freshwater.

motile
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Rhodospirillaceae*
	Genus	*Novispirillum*
	Species	**Novispirillum itersonii**
	Full Scientific Name (LPSN)	Novispirillum itersonii (Giesberger 1936) Yoon et al. 2007

	Synonym	"Levispirillum* itersonii"*
	Synonym	"Spirillum* itersonii"*
	Synonym	Aquaspirillum itersonii

Information on morphological and physiological properties Morphology

[Ref.: #39368]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #39368]	Cell shape	rod-shaped

[Ref.: #39368]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %95.13

Information on culture and growth conditions Culture and growth conditions

[Ref.: #39368]

Culture medium

MEDIUM 14 - Williams and Rittenberg medium for Aquaspirillum genus

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Culture medium growth

[Ref.: #39368]

Culture medium composition

expand / minimize

[Ref.: #39368]

Culture medium

CIP Medium 14

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Culture medium growth

[Ref.: #39368]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #39368]		growth	30 °C
[Ref.: #39368]		growth	15-37 °C
[Ref.: #39368]	no	growth	5 °C
[Ref.: #39368]	no	growth	41 °C
[Ref.: #67770]		growth	30 °C

[Ref.: #39368]	Temperature range	mesophilic
[Ref.: #39368]	Temperature range	psychrophilic
[Ref.: #39368]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #39368]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %97
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.979

	Salt	Tested relation		Salt conc.
[Ref.: #39368]	NaCl		growth	0	%
[Ref.: #39368]	NaCl	no	growth	2	%
[Ref.: #39368]	NaCl	no	growth	4	%
[Ref.: #39368]	NaCl	no	growth	6	%
[Ref.: #39368]	NaCl	no	growth	8	%
[Ref.: #39368]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #39368]	esculin ChEBI	+	hydrolysis
[Ref.: #39368]	glucose ChEBI	-	fermentation
[Ref.: #39368]	glucose ChEBI	-	degradation
[Ref.: #39368]	lactose ChEBI	-	fermentation
[Ref.: #39368]	nitrate ChEBI	+	reduction
[Ref.: #39368]	nitrate ChEBI	-	respiration
[Ref.: #39368]	nitrite ChEBI	+	reduction
[Ref.: #39368]	sodium thiosulfate ChEBI	-	builds gas from

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #39368]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #39368]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #39368]		acetoin ChEBI	-
[Ref.: #39368]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #39368]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #39368]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #39368]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #39368]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #39368]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #39368]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #39368]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #39368]	oxidase	-
[Ref.: #39368]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #39368]	tryptophan deaminase	-
[Ref.: #39368]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #39368]	9002	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Freshwater

[Ref.: #39368]	Sample type/isolated from	Environment, Pond water
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence EF612765 (>99% sequence identity) for Novispirillum itersonii subclade from Microbeatlas

Aquatic Samples	1741
Soil Samples	172
Animal Samples	678
Plant Samples	87
Total Samples	2678

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #39368]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aquaspirillum itersonii subsp. itersonii strain LMG 4337 16S ribosomal RNA gene, partial sequence	EF612765	1442	ENA	180199 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Novispirillum itersonii subsp. itersonii ATCC 12639	GCA_000381985	scaffold	GenBank	1279038 tax ID
[Ref.: #66792]	Novispirillum itersonii subsp. itersonii ATCC 12639	1279038.3	wgs	PATRIC	1279038 tax ID	*
[Ref.: #66792]	Novispirillum itersonii itersonii ATCC 12639	2519899638	draft	JGI IMG/M	1279038 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Novispirillum itersonii subsp. itersonii ATCC 12639 ATCC 12639 NCBI: GCA_000381985.1
[Ref.: #69481]	spore-forming	no	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Novispirillum itersonii subsp. itersonii ATCC 12639 PATRIC: 1279038.3
[Ref.: #69480]	motile	yes	96.715	no
[Ref.: #69480]	gram-positive	no	98.868	no
[Ref.: #69480]	anaerobic	no	96.182	no
[Ref.: #69480]	aerobic	yes	79.557	no
[Ref.: #69480]	halophile	no	89.877	no
[Ref.: #69480]	spore-forming	no	94.333	no
[Ref.: #69480]	thermophile	no	98.77	yes
[Ref.: #69480]	glucose-util	yes	79.182	no
[Ref.: #69480]	flagellated	yes	89.799	no
[Ref.: #69480]	glucose-ferment	no	87.08	no

Availability in culture collections External links

[Ref.: #39368]

Culture collection no.

CIP 105798, ATCC 12639, NCIMB 9070, NRRL B-2053, JCM 21278, CCUG 13727, IAM 14720, IAM 15031, IFO 15648, JCM 21494, LMG 4337, NBRC 15648

[Ref.: #95009]

SI-ID 898

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Aquaspirillum itersonii and Aquaspirillum peregrinum as Novispirillum itersonii gen. nov., comb. nov. and Insolitispirillum peregrinum gen. nov., comb. nov.	Yoon JH, Kang SJ, Park S, Lee SY, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.65340-0	2007	*
Metabolism	Transport and catabolism of D-fructose by Spirillum itersomii.	Hylemon PB, Krieg NR, Phibbs PV Jr	J Bacteriol	10.1128/jb.117.1.144-150.1974	1974	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39368 Collection of Institut Pasteur ; Curators of the CIP; CIP 105798

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#95009

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID898.1 )

* These data were automatically processed and therefore are not curated

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Novispirillum itersonii subsp. itersonii ATCC 12639 ATCC 12639

Novispirillum itersonii subsp. itersonii ATCC 12639

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