Name: Xylanibacter brevis GA33
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 138215

Type strain:

Species: Xylanibacter brevis

Strain Designation: GA33

Culture col. no.: CIP 105473, ATCC 19188, JCM 14576, KCTC 15681

Strain history: CIP <- 2003, ATCC <- 1998, G. Avgustin, Univ. Ljubljana, Slovenia: strain GA33 <- H.J. Flint, Rowett. Res. Inst., Aberdeen, Scotland <- ATCC

NCBI tax ID(s): 1408472 (strain), 83231 (species)

SI-ID 36892

ATCC 19188, JCM 9506, CIP 105473, JCM 14576

Section

Xylanibacter brevis GA33 is an anaerobe, mesophilic bacterium of the family Prevotellaceae.

anaerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Xylanibacter*
	Species	**Xylanibacter brevis**
	Full Scientific Name (LPSN)	Xylanibacter brevis (Bryant et al. 1958) Hitch et al. 2023

	Synonym	Bacteroides ruminicola subsp. brevis
	Synonym	Prevotella brevis
	Synonym	Prevotella ruminicola subsp. brevis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.59

Information on culture and growth conditions Culture and growth conditions

[Ref.: #39300]

Culture medium

MEDIUM 224 - for anaerobic bacteria TGV

[Ref.: #39300]

Culture medium growth

[Ref.: #39300]

Culture medium composition

expand / minimize

[Ref.: #39300]

Culture medium

CIP Medium 20

[Ref.: #39300]

Culture medium growth

[Ref.: #39300]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #39300]			growth	37 °C

[Ref.: #39300]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.695

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #39300]	Sample type/isolated from	Animal, Cattle, rumen
[Ref.: #39300]	Country	United States of America
[Ref.: #39300]	Country ISO 3 Code	USA
[Ref.: #39300]	Continent	North America
[Ref.: #39300]	Isolation date	1958

[Ref.: #39300]	Country	USA
[Ref.: #39300]	Country ISO 3 Code	USA
[Ref.: #39300]	Continent	North America
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #39300]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Prevotella brevis ATCC 19188	GCA_000621725	scaffold	GenBank	1408472 tax ID	*
[Ref.: #66792]	Prevotella brevis ATCC 19188	1408472.3	wgs	PATRIC	1408472 tax ID	*
[Ref.: #66792]	Prevotella brevis ATCC 19188	2556921667	draft	JGI IMG/M	1408472 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Prevotella brevis ATCC 19188 ATCC 19188 NCBI: GCA_000621725.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella brevis ATCC 19188 ATCC 19188 NCBI: GCA_000621725.1
[Ref.: #69480]	motile	no	90.413	no
[Ref.: #69480]	flagellated	no	97.349	no
[Ref.: #69480]	gram-positive	no	98.223	no
[Ref.: #69480]	anaerobic	yes	99.4	no
[Ref.: #69480]	halophile	no	89.991	no
[Ref.: #69480]	spore-forming	no	93.427	no
[Ref.: #69480]	thermophile	no	97.784	yes
[Ref.: #69480]	glucose-util	yes	83.634	no
[Ref.: #69480]	aerobic	no	96.594	no
[Ref.: #69480]	glucose-ferment	yes	59.519	no

Availability in culture collections External links

[Ref.: #39300]

Culture collection no.

CIP 105473, ATCC 19188, JCM 14576, KCTC 15681

[Ref.: #94987]

SI-ID 36892

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39300 Collection of Institut Pasteur ; Curators of the CIP; CIP 105473

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#94987

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36892.1 )

* These data were automatically processed and therefore are not curated

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Prevotella brevis ATCC 19188 ATCC 19188

Prevotella brevis ATCC 19188 ATCC 19188

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