Rhodobacter capsulatus DSM 1710 is an anaerobe, mesophilic, Gram-negative prokaryote of the family Paracoccaceae.
Gram-negative motile rod-shaped anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Alphaproteobacteria |
| Order Rhodobacterales |
| Family Paracoccaceae |
| Genus Rhodobacter |
| Species Rhodobacter capsulatus |
| Full scientific name Rhodobacter capsulatus (Molisch 1907) Imhoff et al. 1984 |
| Synonyms (3) |
| BacDive ID | Other strains from Rhodobacter capsulatus (7) | Type strain |
|---|---|---|
| 13805 | R. capsulatus 37b4, DSM 938 | |
| 13807 | R. capsulatus 6950, DSM 152, Pfennig 6950 | |
| 13808 | R. capsulatus Kb 1, DSM 155 | |
| 13809 | R. capsulatus Dr 1 G, DSM 156 | |
| 13810 | R. capsulatus 28 G, DSM 157 | |
| 141549 | R. capsulatus CCUG 2876 | |
| 146576 | R. capsulatus CCUG 31483, ATCC 23782, LMG 2373 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 867 | RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27) | Medium recipe at MediaDive | Name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27) Composition: Disodium succinate 1.0 g/l KH2PO4 0.5 g/l Ammonium acetate 0.5 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l MgSO4 x 7 H2O 0.4 g/l Yeast extract 0.3 g/l L-Cysteine HCl 0.3 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water | ||
| 36212 | MEDIUM 12 - for Alcaligenes latus and Rhodobacter capsulatus | Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (3.000 g);Peptone (6.000 g) | |||
| 117177 | CIP Medium 12 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125438 | 91.902 |
| 67770 | Observationquinones: Q-10 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | - | assimilation | from API 20NE |
| 68369 | 4853 ChEBI | esculin | + | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | - | assimilation | from API 20NE |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | - | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 117177 | 17632 ChEBI | nitrate | - | reduction | |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 117177 | 16301 ChEBI | nitrite | - | reduction | |
| 68369 | 27897 ChEBI | tryptophan | + | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| @ref | Metabolite | Is antibiotic | Is sensitive | Is resistant | |
|---|---|---|---|---|---|
| 117177 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 117177 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 117177 | amylase | + | ||
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 117177 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68369 | beta-glucosidase | + | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 117177 | caseinase | - | 3.4.21.50 | |
| 117177 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | + | 1.9.3.1 | from API 20NE |
| 117177 | DNase | - | ||
| 117177 | gelatinase | - | ||
| 68369 | gelatinase | - | from API 20NE | |
| 117177 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 117177 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 117177 | ornithine decarboxylase | - | 4.1.1.17 | |
| 117177 | oxidase | + | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 117177 | tween esterase | - | ||
| 117177 | urease | - | 3.5.1.5 | |
| 68369 | urease | - | 3.5.1.5 | from API 20NE |
| 68382 | valine arylamidase | - | from API zym |
Global distribution of 16S sequence D16428 (>99% sequence identity) for Rhodobacter from Microbeatlas ![]()
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 88.40 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 54.60 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 93.00 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 90.80 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 97.48 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 67.54 | no |
| 125438 | aerobic | aerobicⓘ | no | 60.72 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 91.90 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.14 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 70.29 | no |
| Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|
| Production of hydrogen from crude glycerol via an integrated process of L-malate biosynthesis by Escherichia coli and photofermentation by Rhodobacter capsulatus. | Marcos JL, Cabrera G, Hernandez DF, Luque B, Valle A, Bolivar J. | Microb Cell Fact | 10.1186/s12934-025-02866-y | 2025 | |
| Rhodobacter capsulatus forms a compact crescent-shaped LH1-RC photocomplex. | Tani K, Kanno R, Ji XC, Satoh I, Kobayashi Y, Hall M, Yu LJ, Kimura Y, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY. | Nat Commun | 10.1038/s41467-023-36460-w | 2023 | |
| Anaerobic 3-methylhopanoid production by an acidophilic photosynthetic purple bacterium. | Mayer MH, Parenteau MN, Kempher ML, Madigan MT, Jahnke LL, Welander PV. | Arch Microbiol | 10.1007/s00203-021-02561-7 | 2021 | |
| Dark fermentation effluent as substrate for hydrogen production from Rhodobacter capsulatus highlighting the performance of different fermentation systems. | Silva FTM, Bessa LP, Vieira LM, Moreira FS, de Souza Ferreira J, Batista FRX, Cardoso VL. | 3 Biotech | 10.1007/s13205-019-1676-x | 2019 | |
| Genome Sequence and Characterization of a Xanthorhodopsin-Containing, Aerobic Anoxygenic Phototrophic Rhodobacter Species, Isolated from Mesophilic Conditions at Yellowstone National Park. | Kyndt JA, Robertson S, Shoffstall IB, Ramaley RF, Meyer TE. | Microorganisms | 10.3390/microorganisms10061169 | 2022 | |
| An overview of anoxygenic phototrophic bacteria and their applications in environmental biotechnology for sustainable Resource recovery. | George DM, Vincent AS, Mackey HR. | Biotechnol Rep (Amst) | 10.1016/j.btre.2020.e00563 | 2020 | |
| Cheese whey to biohydrogen and useful organic acids: A non-pathogenic microbial treatment by L. acidophilus. | Pandey A, Srivastava S, Rai P, Duke M. | Sci Rep | 10.1038/s41598-019-42752-3 | 2019 | |
| Importance of Rhodospirillum rubrum H(+)-pyrophosphatase under low-energy conditions. | Garcia-Contreras R, Celis H, Romero I. | J Bacteriol | 10.1128/jb.186.19.6651-6655.2004 | 2004 | |
| Crystal structure of 5-aminolevulinate synthase, the first enzyme of heme biosynthesis, and its link to XLSA in humans. | Astner I, Schulze JO, van den Heuvel J, Jahn D, Schubert WD, Heinz DW. | EMBO J | 10.1038/sj.emboj.7600792 | 2005 | |
| Valorization of date palm (Phoenix dactylifera) fruit processing by-products and wastes using bioprocess technology - Review. | Chandrasekaran M, Bahkali AH. | Saudi J Biol Sci | 10.1016/j.sjbs.2012.12.004 | 2013 | |
| Anaerobic oxidation of ferrous iron by purple bacteria, a new type of phototrophic metabolism. | Ehrenreich A, Widdel F. | Appl Environ Microbiol | 10.1128/aem.60.12.4517-4526.1994 | 1994 | |
| Production of Recombinant Horseradish Peroxidase in an Engineered Cell-free Protein Synthesis System. | Park YJ, Kim DM. | Front Bioeng Biotechnol | 10.3389/fbioe.2021.778496 | 2021 | |
| Downregulating of hemB via synthetic antisense RNAs for improving 5-aminolevulinic acid production in Escherichia coli. | Ge F, Wen D, Ren Y, Chen G, He B, Li X, Li W. | 3 Biotech | 10.1007/s13205-021-02733-8 | 2021 | |
| High-level soluble expression of the hemA gene from Rhodobacter capsulatus and comparative study of its enzymatic properties. | Lou JW, Zhu L, Wu MB, Yang LR, Lin JP, Cen PL. | J Zhejiang Univ Sci B | 10.1631/jzus.b1300283 | 2014 | |
| Unconventional genomic organization in the alpha subgroup of the Proteobacteria. | Jumas-Bilak E, Michaux-Charachon S, Bourg G, Ramuz M, Allardet-Servent A. | J Bacteriol | 10.1128/jb.180.10.2749-2755.1998 | 1998 | |
| Structural and functional analyses of photosynthetic regulatory genes regA and regB from Rhodovulum sulfidophilum, Roseobacter denitrificans, and Rhodobacter capsulatus. | Masuda S, Matsumoto Y, Nagashima KV, Shimada K, Inoue K, Bauer CE, Matsuura K. | J Bacteriol | 10.1128/jb.181.14.4205-4215.1999 | 1999 | |
| Phaeobacter and Ruegeria species of the Roseobacter clade colonize separate niches in a Danish Turbot (Scophthalmus maximus)-rearing farm and antagonize Vibrio anguillarum under different growth conditions. | Porsby CH, Nielsen KF, Gram L. | Appl Environ Microbiol | 10.1128/aem.01738-08 | 2008 | |
| Transcriptional control of expression of genes for photosynthetic reaction center and light-harvesting proteins in the purple bacterium Rhodovulum sulfidophilum. | Masuda S, Nagashima KV, Shimada K, Matsuura K. | J Bacteriol | 10.1128/jb.182.10.2778-2786.2000 | 2000 | |
| Coffea arabica L., a new host plant for Acetobacter diazotrophicus, and isolation of other nitrogen-fixing acetobacteria. | Jimenez-Salgado T, Fuentes-Ramirez LE, Tapia-Hernandez A, Mascarua-Esparza MA, Martinez-Romero E, Caballero-Mellado J. | Appl Environ Microbiol | 10.1128/aem.63.9.3676-3683.1997 | 1997 | |
| Nucleotide sequences of 5S ribosomal RNAs of Protomonas extorquens, Rhodopseudomonas palustris, Rhodobacter capsulatus, and Erythrobacter longus. | Kato S, Komagata K. | Nucleic Acids Res | 10.1093/nar/14.10.4371 | 1986 | |
| The nucleotide sequence of the 5 S rRNA of Rhodobacter capsulatus ATCC 23782. | Van den Eynde H, Vandenberghe A, De Wachter R. | Nucleic Acids Res | 10.1093/nar/14.21.8688 | 1986 | |
| Compilation of 5S rRNA and 5S rRNA gene sequences. | Specht T, Wolters J, Erdmann VA. | Nucleic Acids Res | 10.1093/nar/18.suppl.2215 | 1990 | |
| High-level production of porphyrins in metabolically engineered Escherichia coli: systematic extension of a pathway assembled from overexpressed genes involved in heme biosynthesis. | Kwon SJ, de Boer AL, Petri R, Schmidt-Dannert C. | Appl Environ Microbiol | 10.1128/aem.69.8.4875-4883.2003 | 2003 | |
| Single-stage photofermentative biohydrogen production from sugar beet molasses by different purple non-sulfur bacteria. | Sagir E, Ozgur E, Gunduz U, Eroglu I, Yucel M | Bioprocess Biosyst Eng | 10.1007/s00449-017-1815-x | 2017 | |
| Synergistic dark and photo-fermentation continuous system for hydrogen production from molasses by Clostridium acetobutylicum ATCC 824 and Rhodobacter capsulatus DSM 1710. | Morsy FM | J Photochem Photobiol B | 10.1016/j.jphotobiol.2017.02.011 | 2017 | |
| Long-term biological hydrogen production by agar immobilized Rhodobacter capsulatus in a sequential batch photobioreactor. | Elkahlout K, Alipour S, Eroglu I, Gunduz U, Yucel M | Bioprocess Biosyst Eng | 10.1007/s00449-016-1723-5 | 2016 | |
| Draft Genome Sequences of Two Heat-Resistant Mutant Strains (A52 and B41) of the Photosynthetic Hydrogen-Producing Bacterium Rhodobacter capsulatus. | Gokce A, Cakar ZP, Yucel M, Ozcan O, Sencan S, Sertdemir I, Erguner B, Yuceturk B, Sarac A, Yuksel B, Ozturk Y | Genome Announc | 10.1128/genomeA.00531-16 | 2016 | |
| Electrochemical communication between heterotrophically grown Rhodobacter capsulatus with electrodes mediated by an osmium redox polymer. | Hasan K, Patil SA, Gorecki K, Leech D, Hagerhall C, Gorton L | Bioelectrochemistry | 10.1016/j.bioelechem.2012.05.004 | 2012 | |
| Farnesyl diphosphate synthase gene of three phototrophic bacteria and its use as a phylogenetic marker. | Cantera JJL, Kawasaki H, Seki T | Int J Syst Evol Microbiol | 10.1099/00207713-52-6-1953 | 2002 | |
| Spectroscopic characterization of nitrosylheme in nitric oxide complexes of ferric and ferrous cytochrome c' from photosynthetic bacteria. | Yoshimura T, Fujii S, Kamada H, Yamaguchi K, Suzuki S, Shidara S, Takakuwa S | Biochim Biophys Acta | 10.1016/0167-4838(95)00187-5 | 1996 | |
| Electron paramagnetic resonance studies of ferric cytochrome c' from photosynthetic bacteria. | Fujii S, Yoshimura T, Kamada H, Yamaguchi K, Suzuki S, Shidara S, Takakuwa S | Biochim Biophys Acta | 10.1016/0167-4838(95)00092-9 | 1995 | |
| Description of Rhodobacter azollae sp. nov. and Rhodobacter lacus sp. nov. | Suresh G, Sailaja B, Ashif A, Dave BP, Sasikala C, Ramana CV | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002107 | 2017 | |
| Sinorhodobacter hungdaonensis sp. nov. isolated from activated sludge collected from a municipal wastewater treatment plant. | Xi L, Qiao N, Zhang Z, Yan L, Li F, Hu J, Li J | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0770-x | 2016 | |
| Rhodobacter sediminis sp. nov., isolated from lagoon sediments. | Subhash Y, Lee SS | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001130 | 2016 | |
| Paenirhodobacter enshiensis gen. nov., sp. nov., a non-photosynthetic bacterium isolated from soil, and emended descriptions of the genera Rhodobacter and Haematobacter. | Wang D, Liu H, Zheng S, Wang G | Int J Syst Evol Microbiol | 10.1099/ijs.0.050351-0 | 2013 | |
| Rhodobacter viridis sp. nov., a phototrophic bacterium isolated from mud of a stream. | Raj PS, Ramaprasad EVV, Vaseef S, Sasikala C, Ramana CV | Int J Syst Evol Microbiol | 10.1099/ijs.0.038471-0 | 2012 | |
| Rhodobacter aestuarii sp. nov., a phototrophic alphaproteobacterium isolated from an estuarine environment. | Venkata Ramana V, Anil Kumar P, Srinivas TN, Sasikala Ch, Ramana ChV | Int J Syst Evol Microbiol | 10.1099/ijs.0.004507-0 | 2009 |
| #867 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1710 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #36212 | ; Curators of the CIP; |
| #50616 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 31484 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68369 | Automatically annotated from API 20NE . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #117177 | Collection of Institut Pasteur ; Curators of the CIP; CIP 104408 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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