Name: Sulfitobacter delicatus DSM 16477
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13796

Type strain:

Species: Sulfitobacter delicatus

Culture col. no.: DSM 16477, ATCC BAA-321, KCTC 32183, KMM 3584, LMG 20554

Strain history: <- E. P. Ivanova, Swinburne Univ. Technol., IRIS, Hawthorn, Australia; KMM 3584

NCBI tax ID(s): 218672 (species)

SI-ID 84769

LMG 20554, ATCC BAA-321

Section

Sulfitobacter delicatus DSM 16477 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from starfish Stellaster equestris.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Sulfitobacter*
	Species	**Sulfitobacter delicatus**
	Full Scientific Name (LPSN)	Sulfitobacter delicatus Ivanova et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #29915]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.974

[Ref.: #29915]	Cell width	0.8 µm

[Ref.: #29915]	Cell shape	rod-shaped

[Ref.: #29915]	Motility	no

[Ref.: #29915]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6465]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6465]

Culture medium growth

[Ref.: #6465]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6465]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6465]	growth	25 °C
[Ref.: #29915]	growth	12-37 °C
[Ref.: #29915]	optimum	25 °C

[Ref.: #6465]	Temperature range	mesophilic
[Ref.: #29915]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29915]			optimum	7.75
[Ref.: #29915]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29915]

Oxygen tolerance

aerobe

[Ref.: #29915]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.957

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29915]		NaCl		growth	01-08	%
[Ref.: #29915]		NaCl		optimum	3.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29915]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #29915]	fucose ChEBI	+	carbon source
[Ref.: #29915]	galactose ChEBI	+	carbon source
[Ref.: #29915]	gelatin ChEBI	+	carbon source
[Ref.: #29915]	lactose ChEBI	+	carbon source
[Ref.: #29915]	mannitol ChEBI	+	carbon source
[Ref.: #29915]	nitrate ChEBI	+	reduction

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29915]		catalase	+	1.11.1.6
[Ref.: #29915]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6465]	Sample type/isolated from	starfish Stellaster equestris
[Ref.: #6465]	Host species	Stellaster equestris
[Ref.: #6465]	Geographic location (country and/or sea, region)	South China Sea
[Ref.: #6465]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Echinodermata

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ915634 (>99% sequence identity) for Sulfitobacter from Microbeatlas

Aquatic Samples	2251
Soil Samples	83
Animal Samples	278
Plant Samples	12
Total Samples	2624

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6465]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6465]	Sulfitobacter delicatus strain KMM 3584T 16S ribosomal RNA gene, partial sequence	AY180103	1429	ENA	218672 tax ID
[Ref.: #20218]	Sulfitobacter delicatus strain LMG20554 16S ribosomal RNA gene, partial sequence	DQ915634	1307	ENA	218672 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sulfitobacter delicatus DSM 16477	GCA_900102535	scaffold	GenBank	218672 tax ID	*
[Ref.: #66792]	Sulfitobacter delicatus strain DSM 16477	218672.5	wgs	PATRIC	218672 tax ID	*
[Ref.: #66792]	Sulfitobacter delicatus DSM 16477	2634166359	draft	JGI IMG/M	218672 tax ID	*

[Ref.: #6465]

GC-content

60.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sulfitobacter delicatus DSM 16477 NCBI: GCA_900102535.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sulfitobacter delicatus DSM 16477 NCBI: GCA_900102535.1
[Ref.: #69480]	motile	yes	69.922	no
[Ref.: #69480]	flagellated	no	81.823	no
[Ref.: #69480]	gram-positive	no	97.572	no
[Ref.: #69480]	anaerobic	no	98.745	yes
[Ref.: #69480]	aerobic	yes	95.575	yes
[Ref.: #69480]	halophile	yes	90.609	no
[Ref.: #69480]	spore-forming	no	95.137	yes
[Ref.: #69480]	glucose-ferment	no	91.378	no
[Ref.: #69480]	thermophile	no	98.538	no
[Ref.: #69480]	glucose-util	yes	78.212	no

Availability in culture collections External links

[Ref.: #6465]

Culture collection no.

DSM 16477, ATCC BAA-321, KCTC 32183, KMM 3584, LMG 20554

[Ref.: #82974]

SI-ID 84769

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfitobacter maritimus sp. nov., isolated from coastal sediment.	Lian FB, Li YQ, Zhang J, Jiang S, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004659	2021	*
Phylogeny	Sulfitobacter delicatus sp. nov. and Sulfitobacter dubius sp. nov., respectively from a starfish (Stellaster equestris) and sea grass (Zostera marina).	Ivanova EP, Gorshkova NM, Sawabe T, Zhukova NV, Hayashi K, Kurilenko VV, Alexeeva Y, Buljan V, Nicolau DV, Mikhailov VV, Christen R	Int J Syst Evol Microbiol	10.1099/ijs.0.02654-0	2004	*

References

#6465

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16477

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29915

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26286 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82974

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID84769.1 )

#26286

IJSEM 475 2004 ( DOI 10.1099/ijs.0.02654-0 , PubMed 15023963 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Sulfitobacter delicatus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF