Name: Sulfitobacter pontiacus DSM 10014
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13791

Type strain:

Species: Sulfitobacter pontiacus

Culture col. no.: DSM 10014, CHLG 10, KCTC 32185, LMD 95.85, JCM 21789, IAM 15344, LMG 19752, NCCB 95085, VKM B-2022

Strain history: <- DSM <- D Y Sorokin, CHLG 10

NCBI tax ID(s): 60137 (species)

SI-ID 14630

LMG 19752, DSM 10014, VKM B-2022, LMD 95.85, NCCB 95085, KCTC 12524, JCM 21789, IAM 15344

Other strains from Sulfitobacter pontiacus

S. pontiacus DSM 10015, CHLG 5, LMD 95.110
S. pontiacus CCUG 61130

Section

Sulfitobacter pontiacus DSM 10014 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from O₂ : H₂S interface water.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Sulfitobacter*
	Species	**Sulfitobacter pontiacus**
	Full Scientific Name (LPSN)	Sulfitobacter pontiacus Sorokin 1996

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3777]

Culture medium

SULFITOBACTER PONTIACUS MEDIUM (DSMZ Medium 733)

[Ref.: #3777]

Culture medium growth

[Ref.: #3777]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3777]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #3777]	growth	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #3777]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3777]	Sample type/isolated from	O₂ : H₂S interface water
[Ref.: #3777]	Geographic location (country and/or sea, region)	Black Sea
[Ref.: #3777]	Country	Russia
[Ref.: #3777]	Country ISO 3 Code	RUS
[Ref.: #3777]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	O₂:H₂S interface water
[Ref.: #67770]	Geographic location (country and/or sea, region)	Black Sea
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS

[Ref.: #67771]	Sample type/isolated from	From O2 : H2S interface water; Russia
[Ref.: #67771]	Geographic location (country and/or sea, region)	Black Sea
[Ref.: #67771]	Country	Russia
[Ref.: #67771]	Country ISO 3 Code	RUS
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Condition	#Sulfuric	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y13155 (>99% sequence identity) for Sulfitobacter pontiacus from Microbeatlas

Aquatic Samples	1830
Soil Samples	26
Animal Samples	141
Plant Samples	4
Total Samples	2001

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3777]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Sulfitobacter pontiacus 16S rRNA gene, partial	Y13155	1397	ENA	60137 tax ID	*
[Ref.: #20218]	Sulfitobacter pontiacus strain LMG19752 16S ribosomal RNA gene, partial sequence	DQ915637	1305	ENA	60137 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sulfitobacter pontiacus DSM 10014	GCA_900106935	scaffold	GenBank	60137 tax ID
[Ref.: #66792]	Sulfitobacter pontiacus strain DSM 10014	60137.10	wgs	PATRIC	60137 tax ID	*
[Ref.: #66792]	Sulfitobacter pontiacus DSM 10014	2622736431	draft	JGI IMG/M	60137 tax ID	*

[Ref.: #67770]

GC-content

62.1 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sulfitobacter pontiacus strain DSM 10014 PATRIC: 60137.10
[Ref.: #69480]	gram-positive	no	97.893	yes
[Ref.: #69480]	anaerobic	no	98.22	yes
[Ref.: #69480]	halophile	yes	91.131	no
[Ref.: #69480]	spore-forming	no	96.764	no
[Ref.: #69480]	glucose-util	yes	76.284	no
[Ref.: #69480]	thermophile	no	98.429	yes
[Ref.: #69480]	flagellated	no	84.1	no
[Ref.: #69480]	aerobic	yes	95.155	no
[Ref.: #69480]	motile	yes	67.28	no
[Ref.: #69480]	glucose-ferment	no	91.015	no

Availability in culture collections External links

[Ref.: #3777]

Culture collection no.

DSM 10014, CHLG 10, KCTC 32185, LMD 95.85, JCM 21789, IAM 15344, LMG 19752, NCCB 95085, VKM B-2022

[Ref.: #82969]

SI-ID 14630

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfitobacter algicola sp. nov., isolated from green algae.	Wang CN, Liu Y, Wang J, Du ZJ, Wang MY	Arch Microbiol	10.1007/s00203-021-02213-w	2021	*
Phylogeny	Sulfitobacter pontiacus subsp. fungiae subsp. nov., Isolated from Coral Fungia seychellensis from Andaman Sea, and Description of Sulfitobacter pontiacus subsp. pontiacus subsp. nov.	Zachariah S, Kumari P, Das SK	Curr Microbiol	10.1007/s00284-017-1200-7	2017	*
Phylogeny	Paradonghicola geojensis gen. nov., sp. nov., isolated from seawater, Geoje-si, South Korea.	Lee K, Srinivasan S, Lee SS	Arch Microbiol	10.1007/s00203-015-1182-4	2016	*
Phylogeny	Sulfitobacter litoralis sp. nov., a marine bacterium isolated from the East Sea, Korea.	Park JR, Bae JW, Nam YD, Chang HW, Kwon HY, Quan ZX, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.64267-0	2007	*
Phylogeny	Sulfitobacter mediterraneus sp. nov., a new sulfite-oxidizing member of the alpha-Proteobacteria.	Pukall R, Buntefuss D, Fruhling A, Rohde M, Kroppenstedt RM, Burghardt J, Lebaron P, Bernard L, Stackebrandt E	Int J Syst Bacteriol	10.1099/00207713-49-2-513	1999	*

References

#3777

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10014

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82969

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14630.1 )

* These data were automatically processed and therefore are not curated

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Sulfitobacter pontiacus strain DSM 10014

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