Tritonibacter mobilis (DSM 23402, KCCM 42378, NBRC 102038)

Name: Tritonibacter mobilis (DSM 23402, KCCM 42378, NBRC 102038)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13785

Type strain

Culture col. no. DSM 23402 KCCM 42378 NBRC 102038 HTCC 2662 CIP 109709

NCBI tax ID(s) 379347

Special Collections DSMZ Literature strains CIP

History DSMZ <- NBRC <- Y.-J. Choo, Inha University, Incheon, Korea; HTCC 2662 CIP <- 2007, NBRC, Ruegeria pelagia <- Y.J. Choo, Inha Univ., Incheon, Korea: strain HTCC2662

Links

Tritonibacter mobilis DSM 23402 is a facultative aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative rod-shaped facultative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 293507

DSM 23402,NBRC 102038,CIP 109709

@ref 20215

Last LPSN update 2026-05-29 08:28:07

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Tritonibacter

Species Tritonibacter mobilis

Full scientific name Tritonibacter mobilis (Muramatsu et al. 2007) Hördt et al. 2020

Synonyms (4)

Epibacterium mobile
Tritonibacter mobilis subsp. pelagius
Ruegeria pelagia
Ruegeria mobilis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32143	negative	1.45 µm	0.95 µm	rod-shaped
125438	negative				98.233
120989	negative			oval-shaped

Pigmentation

32143

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16844	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
34988	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
120989	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
16844	positive	growth	28
32143	positive	growth	16-42
32143	positive	optimum	33.5
34988	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
32143	positive	optimum	5.5
32143	positive	growth	04-12	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32143	facultative aerobe
120989	facultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		98.907

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32143	NaCl	positive	growth	0-10 %
32143	NaCl	positive	optimum	3.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32143	62064 ChEBI	2,3-butanediol	+	carbon source
32143	28644 ChEBI	2-oxopentanoate	+	carbon source
32143	18240 ChEBI	4-hydroxy-L-proline	+	carbon source
32143	30089 ChEBI	acetate	+	carbon source
32143	16449 ChEBI	alanine	+	carbon source
32143	40585 ChEBI	alpha-cyclodextrin	+	carbon source
32143	22599 ChEBI	arabinose	+	carbon source
32143	22653 ChEBI	asparagine	+	carbon source
32143	35391 ChEBI	aspartate	+	carbon source
32143	17057 ChEBI	cellobiose	+	carbon source
32143	16947 ChEBI	citrate	+	carbon source
32143	23652 ChEBI	dextrin	+	carbon source
32143	17126 ChEBI	DL-carnitine	+	carbon source
32143	4853 ChEBI	esculin	+	hydrolysis
32143	16000 ChEBI	ethanolamine	+	carbon source
32143	15740 ChEBI	formate	+	carbon source
32143	28757 ChEBI	fructose	+	carbon source
32143	28260 ChEBI	galactose	+	carbon source
32143	24175 ChEBI	galacturonate	+	carbon source
32143	16865 ChEBI	gamma-aminobutyric acid	+	carbon source
32143	17234 ChEBI	glucose	+	carbon source
32143	29987 ChEBI	glutamate	+	carbon source
32143	17754 ChEBI	glycerol	+	carbon source
32143	28087 ChEBI	glycogen	+	carbon source
32143	27570 ChEBI	histidine	+	carbon source
32143	17596 ChEBI	inosine	+	carbon source
32143	21217 ChEBI	L-alaninamide	+	carbon source
32143	18403 ChEBI	L-arabitol	+	carbon source
32143	24996 ChEBI	lactate	+	carbon source
32143	17716 ChEBI	lactose	+	carbon source
32143	25017 ChEBI	leucine	+	carbon source
32143	17306 ChEBI	maltose	+	carbon source
32143	29864 ChEBI	mannitol	+	carbon source
32143	28053 ChEBI	melibiose	+	carbon source
32143	51850 ChEBI	methyl pyruvate	+	carbon source
32143	17268 ChEBI	myo-inositol	+	carbon source
32143	506227 ChEBI	N-acetylglucosamine	+	carbon source
120989	17632 ChEBI	nitrate	-	reduction
120989	16301 ChEBI	nitrite	-	reduction
32143	18257 ChEBI	ornithine	+	carbon source
32143	28044 ChEBI	phenylalanine	+	carbon source
32143	26271 ChEBI	proline	+	carbon source
32143	17272 ChEBI	propionate	+	carbon source
32143	17148 ChEBI	putrescine	+	carbon source
32143	15963 ChEBI	ribitol	+	carbon source
32143	17822 ChEBI	serine	+	carbon source
32143	30911 ChEBI	sorbitol	+	carbon source
32143	30031 ChEBI	succinate	+	carbon source
32143	17992 ChEBI	sucrose	+	carbon source
32143	26986 ChEBI	threonine	+	carbon source
32143	17748 ChEBI	thymidine	+	carbon source
32143	27082 ChEBI	trehalose	+	carbon source
32143	53423 ChEBI	tween 40	+	carbon source
32143	53426 ChEBI	tween 80	+	carbon source
32143	16704 ChEBI	uridine	+	carbon source
32143	27248 ChEBI	urocanic acid	+	carbon source
32143	17151 ChEBI	xylitol	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120989	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
32143	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
32143	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32143	catalase	+	1.11.1.6
120989	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
32143	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120989	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
120989	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120989	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	+	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
16844	seawater	Atlantic Ocean, Western Sargasso Sea, Atlantic Time Series Station	Bermuda	BMU	Middle and South America
120989	Environment, Seawater	Sargasso Sea	Atlantic Ocean			2001

Taxonmaps

69479

Global distribution of 16S sequence AB681677 (>99% sequence identity) for Epibacterium mobile subclade from Microbeatlas

Aquatic Samples	16540
Soil Samples	558
Animal Samples	2089
Plant Samples	125
Total Samples	19312

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16844	1	Risk group (German classification) According to TRBA 466
120989	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM168173v1 assembly for Tritonibacter mobilis NBRC102038	contig	GCA_001681735	379347.144	2816332506	379347	62.22

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Ruegeria mobilis gene for 16S rRNA, partial sequence, strain: NBRC 102038	AB681677	1387	379347
20218	Ruegeria pelagia strain NBRC 102038 16S ribosomal RNA gene, partial sequence	EU977138	1425	379347
16844	Ruegeria pelagia strain HTCC2662 16S ribosomal RNA gene, partial sequence	DQ916141	1425	379347

GC content

16844

GC-content (mol%)58.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM168173v1 assembly for Tritonibacter mobilis NBRC102038
NCBI: GCA_001681735

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.67	no
125439	gram_stain	BacteriaNetⓘ	negative	80.89	no
125439	motility	BacteriaNetⓘ	yes	56.62	no
125439	spore_formation	BacteriaNetⓘ	no	98.91	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ruegeria mobilis strain NBRC102038
PATRIC: 379347.144

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.23	yes
125438	anaerobic	anaerobicⓘ	no	93.71	yes
125438	spore-forming	spore-formingⓘ	no	89.73	no
125438	aerobic	aerobicⓘ	yes	77.60	yes
125438	thermophilic	thermophileⓘ	no	97.84	yes
125438	flagellated	motile2+ⓘ	yes	65.62	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria.	Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M.	Front Microbiol	10.3389/fmicb.2020.00468	2020

References

#16844	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23402
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#28387	IJSEM 1815 2007 ( DOI 10.1099/ijs.0.65032-0 , PubMed 17684263 )
#32143	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28387
#34988	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120989	Collection of Institut Pasteur ; Curators of the CIP; CIP 109709
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tritonibacter mobilis (DSM 23402, KCCM 42378, NBRC 102038)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001681735

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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