Name: Epibacterium mobile DSM 23402
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13785

Type strain:

Species: Epibacterium mobile

Culture col. no.: DSM 23402, KCCM 42378, NBRC 102038, HTCC 2662, CIP 109709

Strain history: CIP <- 2007, NBRC, Ruegeria pelagia <- Y.J. Choo, Inha Univ., Incheon, Korea: strain HTCC2662

NCBI tax ID(s): 379347 (species)

Other strains from Epibacterium mobile

E. mobile N-615G15, DSM 23403, CIP 109181, ... (type strain)

Section

Epibacterium mobile DSM 23402 is a facultative aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

Gram-negative
rod-shaped
facultative aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Epibacterium*
	Species	**Epibacterium mobile**
	Full Scientific Name (LPSN)	Epibacterium mobile (Muramatsu et al. 2007) Wirth and Whitman 2018

	Synonym	Tritonibacter mobilis
	Synonym	Tritonibacter mobilis subsp. pelagius
	Synonym	Ruegeria pelagia
	Synonym	Ruegeria mobilis

Information on morphological and physiological properties Morphology

[Ref.: #32143]	Gram stain	negative
[Ref.: #120989]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.99

[Ref.: #32143]	Cell length	1.45 µm

[Ref.: #32143]	Cell width	0.95 µm

[Ref.: #32143]	Cell shape	rod-shaped
[Ref.: #120989]	Cell shape	oval-shaped

[Ref.: #32143]	Motility	no
[Ref.: #120989]	Motility	no

[Ref.: #32143]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16844]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16844]

Culture medium growth

[Ref.: #16844]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16844]

Culture medium composition

expand / minimize

[Ref.: #34988]

Culture medium

Marine agar (MA)

[Ref.: #34988]

Culture medium growth

[Ref.: #34988]

Culture medium composition

expand / minimize

[Ref.: #120989]

Culture medium

CIP Medium 13

[Ref.: #120989]

Culture medium growth

[Ref.: #120989]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16844]	growth	28 °C
[Ref.: #32143]	growth	16-42 °C
[Ref.: #32143]	optimum	33.5 °C
[Ref.: #34988]	growth	30 °C

[Ref.: #16844]	Temperature range	mesophilic
[Ref.: #32143]	Temperature range	mesophilic
[Ref.: #34988]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32143]			optimum	5.5
[Ref.: #32143]			growth	04-12

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32143]	Oxygen tolerance	facultative aerobe
[Ref.: #120989]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32143]		NaCl		growth	0-10	%
[Ref.: #32143]		NaCl		optimum	3.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32143]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #32143]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #32143]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #32143]	acetate ChEBI	+	carbon source
[Ref.: #32143]	alanine ChEBI	+	carbon source
[Ref.: #32143]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #32143]	arabinose ChEBI	+	carbon source
[Ref.: #32143]	asparagine ChEBI	+	carbon source
[Ref.: #32143]	aspartate ChEBI	+	carbon source
[Ref.: #32143]	cellobiose ChEBI	+	carbon source
[Ref.: #32143]	citrate ChEBI	+	carbon source
[Ref.: #32143]	dextrin ChEBI	+	carbon source
[Ref.: #32143]	DL-carnitine ChEBI	+	carbon source
[Ref.: #32143]	esculin ChEBI	+	hydrolysis
[Ref.: #32143]	ethanolamine ChEBI	+	carbon source
[Ref.: #32143]	formate ChEBI	+	carbon source
[Ref.: #32143]	fructose ChEBI	+	carbon source
[Ref.: #32143]	galactose ChEBI	+	carbon source
[Ref.: #32143]	galacturonate ChEBI	+	carbon source
[Ref.: #32143]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #32143]	glucose ChEBI	+	carbon source
[Ref.: #32143]	glutamate ChEBI	+	carbon source
[Ref.: #32143]	glycerol ChEBI	+	carbon source
[Ref.: #32143]	glycogen ChEBI	+	carbon source
[Ref.: #32143]	histidine ChEBI	+	carbon source
[Ref.: #32143]	inosine ChEBI	+	carbon source
[Ref.: #32143]	L-alaninamide ChEBI	+	carbon source
[Ref.: #32143]	L-arabitol ChEBI	+	carbon source
[Ref.: #32143]	lactate ChEBI	+	carbon source
[Ref.: #32143]	lactose ChEBI	+	carbon source
[Ref.: #32143]	leucine ChEBI	+	carbon source
[Ref.: #32143]	maltose ChEBI	+	carbon source
[Ref.: #32143]	mannitol ChEBI	+	carbon source
[Ref.: #32143]	melibiose ChEBI	+	carbon source
[Ref.: #32143]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #32143]	myo-inositol ChEBI	+	carbon source
[Ref.: #32143]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #120989]	nitrate ChEBI	-	reduction
[Ref.: #120989]	nitrite ChEBI	-	reduction
[Ref.: #32143]	ornithine ChEBI	+	carbon source
[Ref.: #32143]	phenylalanine ChEBI	+	carbon source
[Ref.: #32143]	proline ChEBI	+	carbon source
[Ref.: #32143]	propionate ChEBI	+	carbon source
[Ref.: #32143]	putrescine ChEBI	+	carbon source
[Ref.: #32143]	ribitol ChEBI	+	carbon source
[Ref.: #32143]	serine ChEBI	+	carbon source
[Ref.: #32143]	sorbitol ChEBI	+	carbon source
[Ref.: #32143]	succinate ChEBI	+	carbon source
[Ref.: #32143]	sucrose ChEBI	+	carbon source
[Ref.: #32143]	threonine ChEBI	+	carbon source
[Ref.: #32143]	thymidine ChEBI	+	carbon source
[Ref.: #32143]	trehalose ChEBI	+	carbon source
[Ref.: #32143]	tween 40 ChEBI	+	carbon source
[Ref.: #32143]	tween 80 ChEBI	+	carbon source
[Ref.: #32143]	uridine ChEBI	+	carbon source
[Ref.: #32143]	urocanic acid ChEBI	+	carbon source
[Ref.: #32143]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #120989]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #32143]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #32143]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32143]	catalase	+	1.11.1.6
[Ref.: #120989]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #32143]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120989]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120989]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120989]	12051	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16844]	Sample type/isolated from	seawater
[Ref.: #16844]	Geographic location (country and/or sea, region)	Atlantic Ocean, Western Sargasso Sea, Atlantic Time Series Station
[Ref.: #16844]	Country	Bermuda
[Ref.: #16844]	Country ISO 3 Code	BMU
[Ref.: #16844]	Continent	Middle and South America

[Ref.: #120989]	Sample type/isolated from	Environment, Seawater
[Ref.: #120989]	Geographic location (country and/or sea, region)	Sargasso Sea
[Ref.: #120989]	Country	Atlantic Ocean
[Ref.: #120989]	Isolation date	2001
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681677 (>99% sequence identity) for Epibacterium mobile subclade from Microbeatlas

Aquatic Samples	16540
Soil Samples	558
Animal Samples	2089
Plant Samples	125
Total Samples	19312

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16844]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120989]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16844]	Ruegeria pelagia strain HTCC2662 16S ribosomal RNA gene, partial sequence	DQ916141	1425	ENA	379347 tax ID
[Ref.: #20218]	Ruegeria pelagia strain NBRC 102038 16S ribosomal RNA gene, partial sequence	EU977138	1425	ENA	379347 tax ID	*
[Ref.: #20218]	Ruegeria mobilis gene for 16S rRNA, partial sequence, strain: NBRC 102038	AB681677	1387	ENA	379347 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tritonibacter mobilis NBRC102038	GCA_001681735	contig	GenBank	379347 tax ID	*
[Ref.: #66792]	Ruegeria mobilis strain NBRC102038	379347.144	wgs	PATRIC	379347 tax ID	*
[Ref.: #66792]	Epibacterium mobile NBRC 102038	2816332506	draft	JGI IMG/M	379347 tax ID	*

[Ref.: #16844]

GC-content

58.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ruegeria mobilis strain NBRC102038 PATRIC: 379347.144
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ruegeria mobilis strain NBRC102038 PATRIC: 379347.144
[Ref.: #69480]	gram-positive	no	98.896	yes
[Ref.: #69480]	anaerobic	no	98.695	no
[Ref.: #69480]	halophile	yes	83.02	no
[Ref.: #69480]	spore-forming	no	96.37	no
[Ref.: #69480]	glucose-util	yes	90.044	yes
[Ref.: #69480]	aerobic	yes	86.507	yes
[Ref.: #69480]	motile	yes	78.474	yes
[Ref.: #69480]	flagellated	no	68.959	no
[Ref.: #69480]	thermophile	no	96.268	yes
[Ref.: #69480]	glucose-ferment	no	90.279	no

Availability in culture collections External links

[Ref.: #16844]

Culture collection no.

DSM 23402, KCCM 42378, NBRC 102038, HTCC 2662, CIP 109709

References

#16844

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23402

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32143

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28387 (see below)

#34988 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#120989 Collection of Institut Pasteur ; Curators of the CIP; CIP 109709

#28387

IJSEM 1815 2007 ( DOI 10.1099/ijs.0.65032-0 , PubMed 17684263 )

* These data were automatically processed and therefore are not curated

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Ruegeria mobilis strain NBRC102038

Ruegeria mobilis strain NBRC102038

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