Name: Roseobacter sp. R 55
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13765

Type strain:

Species: Roseobacter sp.

Strain Designation: R 55

Culture col. no.: DSM 15398, KMM 3653

Strain history: <- L. A. Romanenko, Pacific Inst. Bioorg. Chem., RAS, Vladivostok, Russia; R 55

NCBI tax ID(s): 1907202 (species)

SI-ID 397411

DSM 15398

Section

Roseobacter sp. R 55 is a mesophilic, Gram-negative bacterium that was isolated from bottom sediments.

Gram-negative
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Roseobacter*
	Full Scientific Name (LPSN)	Roseobacter Shiba 1991

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #5894]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5894]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5894]

Culture medium growth

[Ref.: #5894]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5894]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5894]			growth	28 °C

[Ref.: #5894]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5894]	Sample type/isolated from	bottom sediments
[Ref.: #5894]	Geographic location (country and/or sea, region)	Sea of Japan
[Ref.: #5894]	Country	Russia
[Ref.: #5894]	Country ISO 3 Code	RUS
[Ref.: #5894]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alphaproteobacteria bacterium KMM 3653	GCA_018524345	contig	GenBank	2789583 tax ID	*
[Ref.: #66792]	Alphaproteobacteria bacterium KMM 3653	2789583.3	wgs	PATRIC	2789583 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alphaproteobacteria bacterium KMM 3653 PATRIC: 2789583.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alphaproteobacteria bacterium KMM 3653 PATRIC: 2789583.3
[Ref.: #69480]	motile	no	94.566	no
[Ref.: #69480]	gram-positive	no	98.624	no
[Ref.: #69480]	anaerobic	no	99.027	no
[Ref.: #69480]	halophile	yes	80.787	no
[Ref.: #69480]	spore-forming	no	97.413	no
[Ref.: #69480]	glucose-util	yes	71.003	no
[Ref.: #69480]	flagellated	no	97.865	no
[Ref.: #69480]	aerobic	yes	94.206	no
[Ref.: #69480]	thermophile	no	97.122	no
[Ref.: #69480]	glucose-ferment	no	89.85	no

Availability in culture collections External links

[Ref.: #5894]

Culture collection no.

DSM 15398, KMM 3653

[Ref.: #82944]

SI-ID 397411

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Harenicola maris gen. nov., sp. nov. isolated from the Sea of Japan shallow sediments.	Romanenko LA, Kurilenko VV, Chernysheva NY, Tekutyeva LA, Velansky PV, Svetashev VI, Isaeva MP	Arch Microbiol	10.1007/s00203-021-02360-0	2021	*

References

#5894

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15398

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82944

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397411.1 )

* These data were automatically processed and therefore are not curated

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Alphaproteobacteria bacterium KMM 3653

Alphaproteobacteria bacterium KMM 3653

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