Roseobacter denitrificans (DSM 7001, ATCC 33942, OCh 114)

Name: Roseobacter denitrificans (DSM 7001, ATCC 33942, OCh 114)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13763

Type strain

Culture col. no. DSM 7001 ATCC 33942 OCh 114 NCIMB 2176 NBRC 15277 4 more

NCBI tax ID(s) 375451 2434

Special Collections DSMZ JCM CIP

History DSMZ <- T. Shiba, Otsuchi Marine Res. Center, Univ. Tokyo, OCh 114 JCM <-- IAM 14592 <-- IFO 15277 <-- T. Shiba OCh114. CIP <- 1994, M. Gauthier, INSERM, Nice, France <- ATCC <- T. Shiba: strain OCh114

Links

Roseobacter denitrificans DSM 7001 is a Gram-negative, motile, rod-shaped bacterium that was isolated from Enteromorpha linza collected at Aburatsubo Inlet.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 40774

ATCC 33942,CIP 104266,DSM 7001,NCIMB 2176,IFO 15277,LMG 19751,CECT 5011,NCIB 2176,NBRC 15277,IAM 14592,JCM 21267,LMG 3984,LMG 5512

@ref 20215

Last LPSN update 2026-05-29 08:28:07

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Roseobacter

Species Roseobacter denitrificans

Full scientific name Roseobacter denitrificans Shiba 1991

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438	negative		98.5
125439	negative		94.01
118905	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2944	MEDIUM FOR ERYTHROBACTER LONGUS (DSMZ Medium 695)	Medium recipe at MediaDive	Name: MEDIUM FOR ERYTHROBACTER LONGUS (DSMZ Medium 695) Composition: Peptone 2.0 g/l Proteose peptone no. 3 1.0 g/l Yeast extract 1.0 g/l Soytone 1.0 g/l Fe(III) citrate 0.1 g/l Sea water Distilled water
2944	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
41078	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
118905	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
2944	positive	growth	20
41078	positive	growth	22
67770	positive	growth	25
118905	positive	growth	10-37
118905	negative	growth	5

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.871
125439		98.602

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
118905	17632 ChEBI	nitrate	+	reduction
118905	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
118905	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67770	30033 ChEBI	bacteriochlorophyll a
118905	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
118905	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
118905	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
118905	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
2944	catalase	+	1.11.1.6
118905	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
2944	cytochrome-c oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
118905	gelatinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
118905	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118905	ornithine decarboxylase	-	4.1.1.17
118905	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
118905	urease	+	3.5.1.5
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	formaldehyde oxidation	100	3 of 3
66794	ethanol fermentation	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	methane metabolism	100	3 of 3
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ketogluconate metabolism	100	8 of 8
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	denitrification	100	2 of 2
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	butanoate fermentation	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	lactate fermentation	100	4 of 4
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	IAA biosynthesis	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	CMP-KDO biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	Entner Doudoroff pathway	100	10 of 10
66794	ppGpp biosynthesis	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	NAD metabolism	94.44	17 of 18
66794	alanine metabolism	93.1	27 of 29
66794	vitamin B12 metabolism	91.18	31 of 34
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	citric acid cycle	85.71	12 of 14
66794	vitamin B1 metabolism	84.62	11 of 13
66794	methionine metabolism	84.62	22 of 26
66794	phenylalanine metabolism	84.62	11 of 13
66794	leucine metabolism	84.62	11 of 13
66794	pyrimidine metabolism	84.44	38 of 45
66794	purine metabolism	84.04	79 of 94
66794	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	proline metabolism	81.82	9 of 11
66794	degradation of sugar alcohols	81.25	13 of 16
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	propionate fermentation	80	8 of 10
66794	creatinine degradation	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	arginine metabolism	79.17	19 of 24
66794	heme metabolism	78.57	11 of 14
66794	tyrosine metabolism	78.57	11 of 14
66794	glutathione metabolism	78.57	11 of 14
66794	degradation of sugar acids	76	19 of 25
66794	histidine metabolism	75.86	22 of 29
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	vitamin B6 metabolism	72.73	8 of 11
66794	pentose phosphate pathway	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	degradation of hexoses	72.22	13 of 18
66794	degradation of pentoses	71.43	20 of 28
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	lipid metabolism	70.97	22 of 31
66794	oxidative phosphorylation	70.33	64 of 91
66794	myo-inositol biosynthesis	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	sulfate reduction	69.23	9 of 13
66794	tryptophan metabolism	68.42	26 of 38
66794	d-mannose degradation	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	lysine metabolism	66.67	28 of 42
66794	cyanate degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	nitrate assimilation	66.67	6 of 9
66794	non-pathway related	65.79	25 of 38
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	glycolysis	64.71	11 of 17
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	chlorophyll metabolism	61.11	11 of 18
66794	factor 420 biosynthesis	60	3 of 5
66794	glycine metabolism	60	6 of 10
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	phenol degradation	60	12 of 20
66794	coenzyme M biosynthesis	60	6 of 10
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	cyclohexanol degradation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	carnitine metabolism	50	4 of 8
66794	ascorbate metabolism	50	11 of 22
66794	pantothenate biosynthesis	50	3 of 6
66794	starch degradation	50	5 of 10
66794	phenylmercury acetate degradation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	biotin biosynthesis	50	2 of 4
66794	quinate degradation	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	d-xylose degradation	45.45	5 of 11
66794	metabolism of disaccharids	45.45	5 of 11
66794	arachidonic acid metabolism	44.44	8 of 18
66794	aclacinomycin biosynthesis	42.86	3 of 7
66794	arachidonate biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	bile acid biosynthesis, neutral pathway	35.29	6 of 17
66794	enterobactin biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	polyamine pathway	30.43	7 of 23
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	mevalonate metabolism	28.57	2 of 7
66794	methanogenesis from CO2	25	3 of 12
66794	alginate biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118905	-	+	+	+	-	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
118905	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67770	Enteromorpha linza collected at Aburatsubo Inlet	Enteromorpha linza	Kanagawa Pref.	Japan	JPN	Asia
118905	Green sea-weed

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2944	1	Risk group (German classification) According to TRBA 466
118905	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1404v1 assembly for Roseobacter denitrificans OCh 114	complete	GCA_000014045	375451.14	639633056	375451	98.57
67770	IMG-taxon 2693429868 annotated assembly for Roseobacter denitrificans OCh 114 DSM 7001	contig	GCA_900113215	375451.51	2693429868	375451	71.75

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Roseobacter denitrificans 16S rRNA gene, 23S rRNA gene and internal transcribed spacer (ITS), strain DSM 7001	AJ012706	980	375451
67770	Roseobacter denitrificans strain NBRC15277 16S ribosomal RNA gene, partial sequence	DQ915623	1307	2434
67770	Roseobacter sp. OCh114 16S ribosomal RNA gene, complete sequence	M59063	1411	375451
67770	Roseobacter denitrificans OCh 114 16S ribosomal RNA gene, partial sequence	M96746	1265	375451

GC content

@ref	GC-content (mol%)	Method
67770	59.1-60.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1404v1 assembly for Roseobacter denitrificans OCh 114
NCBI: GCA_000014045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.69	no
125439	motility	BacteriaNetⓘ	no	63.23	no
125439	gram_stain	BacteriaNetⓘ	negative	94.01	no
125439	spore_formation	BacteriaNetⓘ	no	98.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Roseobacter denitrificans OCh 114 strain DSM 7001
PATRIC: 375451.51

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	94.34	no
125438	spore-forming	spore-formingⓘ	no	90.87	no
125438	aerobic	aerobicⓘ	yes	82.89	no
125438	thermophilic	thermophileⓘ	no	95.69	yes
125438	flagellated	motile2+ⓘ	yes	57.06	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation and characterization of a roseophage representing a novel genus in the N4-like Rhodovirinae subfamily distributed in estuarine waters.	Huang X, Yu C, Lu L.	BMC Genomics	10.1186/s12864-025-11463-7	2025
	Control of Brettanomyces bruxellensis on wine grapes by post-harvest treatments with electrolyzed water, ozonated water and gaseous ozone	Cravero F, Englezos V, Rantsiou K, Torchio F, Giacosa S, Rio Segade S, Gerbi V, Rolle L, Cocolin L.	Innovative food science & emerging technologies : IFSET : the official scientific journal of the European Federation of Food Science and Technology.	10.1016/j.ifset.2018.03.017	2018
Genetics	Complete Genome of Roseobacter ponti DSM 106830T.	Hollensteiner J, Schneider D, Poehlein A, Daniel R.	Genome Biol Evol	10.1093/gbe/evaa114	2020
	The effects of extracellular pH and hydroxycinnamic acids influence the intracellular pH of Brettanomyces bruxellensis DSM 7001	Campolongo S, Siegumfeldt H, Aabo T, Cocolin L, Arneborg N.	Lebensm Wiss Technol	10.1016/j.lwt.2014.06.006	2014
	A Virus Infecting Marine Photoheterotrophic Alphaproteobacteria (Citromicrobium spp.) Defines a New Lineage of ssDNA Viruses.	Zheng Q, Chen Q, Xu Y, Suttle CA, Jiao N.	Front Microbiol	10.3389/fmicb.2018.01418	2018
	Sulfoquinovose is a widespread organosulfur substrate for Roseobacter clade bacteria in the ocean.	Liu L, Chen X, Ye J, Ma X, Han Y, He Y, Tang K.	ISME J	10.1038/s41396-022-01353-1	2023
	Genome sequence of Epibacterium ulvae strain DSM 24752^T, an indigoidine-producing, macroalga-associated member of the marine Roseobacter group.	Breider S, Sehar S, Berger M, Thomas T, Brinkhoff T, Egan S.	Environ Microbiome	10.1186/s40793-019-0343-5	2019
Phylogeny	Isolation and characterization of the first phage infecting ecologically important marine bacteria Erythrobacter.	Lu L, Cai L, Jiao N, Zhang R.	Virol J	10.1186/s12985-017-0773-x	2017
Metabolism	Respiratory Kinetics of Marine Bacteria Exposed to Decreasing Oxygen Concentrations.	Gong X, Garcia-Robledo E, Schramm A, Revsbech NP.	Appl Environ Microbiol	10.1128/aem.03669-15	2015
Phylogeny	Diverse arrangement of photosynthetic gene clusters in aerobic anoxygenic phototrophic bacteria.	Zheng Q, Zhang R, Koblizek M, Boldareva EN, Yurkov V, Yan S, Jiao N.	PLoS One	10.1371/journal.pone.0025050	2011
	Evaluation of Heterologous Biosynthetic Pathways for Methanol-Based 5-Aminovalerate Production by Thermophilic Bacillus methanolicus.	Brito LF, Irla M, Naerdal I, Le SB, Delepine B, Heux S, Brautaset T.	Front Bioeng Biotechnol	10.3389/fbioe.2021.686319	2021
Metabolism	Characterisation of a New Family of Carboxyl Esterases with an OsmC Domain.	Jensen MV, Horsfall LE, Wardrope C, Togneri PD, Marles-Wright J, Rosser SJ.	PLoS One	10.1371/journal.pone.0166128	2016
	Seasonal incidence of autochthonous antagonistic Roseobacter spp. and Vibrionaceae strains in a turbot larva (Scophthalmus maximus) rearing system.	Hjelm M, Riaza A, Formoso F, Melchiorsen J, Gram L.	Appl Environ Microbiol	10.1128/aem.70.12.7288-7294.2004	2004
	DmdA-independent lag phase shortening in Phaeobacter inhibens bacteria under stress conditions.	Narvaez-Barragan DA, Sperfeld M, Segev E.	FEBS J	10.1111/febs.70128	2025
	Contamination of bacterial extracellular vesicles (bEVs) in human urinary extracellular vesicles (uEVs) samples and their effects on uEVs study	Noonin C, Peerapen P, Thongboonkerd V.	J Extracell Biol		2022
Phylogeny	A Novel Roseosiphophage Isolated from the Oligotrophic South China Sea.	Yang Y, Cai L, Ma R, Xu Y, Tong Y, Huang Y, Jiao N, Zhang R.	Viruses	10.3390/v9050109	2017
	Production of antibacterial compounds and biofilm formation by Roseobacter species are influenced by culture conditions.	Bruhn JB, Gram L, Belas R.	Appl Environ Microbiol	10.1128/aem.02238-06	2007
	Genome sequences of two novel phages infecting marine roseobacters.	Zhao Y, Wang K, Jiao N, Chen F.	Environ Microbiol	10.1111/j.1462-2920.2009.01927.x	2009
Metabolism	Genetic dissection of tropodithietic acid biosynthesis by marine roseobacters.	Geng H, Bruhn JB, Nielsen KF, Gram L, Belas R.	Appl Environ Microbiol	10.1128/aem.02339-07	2008
Enzymology	Nitric oxide reductase (norB) genes from pure cultures and environmental samples.	Braker G, Tiedje JM.	Appl Environ Microbiol	10.1128/aem.69.6.3476-3483.2003	2003
Phylogeny	Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in pacific northwest marine sediment communities.	Braker G, Zhou J, Wu L, Devol AH, Tiedje JM.	Appl Environ Microbiol	10.1128/aem.66.5.2096-2104.2000	2000
Phylogeny	Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA.	Nogales B, Timmis KN, Nedwell DB, Osborn AM.	Appl Environ Microbiol	10.1128/aem.68.10.5017-5025.2002	2002
	Phylogenetic analysis, metabolic profiling, and environmental adaptation of strain LCG007: a novel Rhodobacteraceae isolated from the East China Sea intertidal zone.	Liang C, Wang J, Liu J, Wang Z, Cao J, Yu X, Zhang L, Fang J.	Front Microbiol	10.3389/fmicb.2024.1533195	2024
	Development of a real-time quantitative PCR assay for detection and quantification of the marine bacterium Alteromonas macleodii from coastal environments.	Gautam P, Cusick KD.	J Microbiol Methods	10.1016/j.mimet.2022.106629	2023
Genetics	Exploring microbial players for metagenomic profiling of carbon cycling bacteria in sundarban mangrove soils.	Das BK, Gadnayak A, Chakraborty HJ, Pradhan SP, Raut SS, Das SK.	Sci Rep	10.1038/s41598-025-89418-x	2025
	Pathway crosstalk enables degradation of aromatic compounds in marine Roseobacter clade bacteria.	Xu H-W, Wang X-Y, Wei Y, Cao Y, Wang S-G, Xia P-F.	Appl Environ Microbiol	10.1128/aem.00978-25	2025
Genetics	Genome-wide comparative analysis of clinical and environmental strains of the opportunistic pathogen Paracoccus yeei (Alphaproteobacteria).	Szuplewska M, Sentkowska D, Lasek R, Decewicz P, Halucha M, Funk L, Chmielowska C, Bartosik D.	Front Microbiol	10.3389/fmicb.2024.1483110	2024
Genetics	Genomic language models (gLMs) decode bacterial genomes for improved gene prediction and translation initiation site identification.	Akotenou G, El Allali A.	Brief Bioinform	10.1093/bib/bbaf311	2025
Genetics	Exploring the trimethylamine-degrading genes in the human gut microbiome.	Chen YR, Chen LD, Zheng LJ.	AMB Express	10.1186/s13568-025-01902-9	2025
	Photoreduction of carotenoids in the aerobic anoxygenic photoheterotrophs probed by real time Raman spectroscopy.	Papageorgiou M, Tselios C, Varotsis C.	J Photochem Photobiol B	10.1016/j.jphotobiol.2020.112069	2020
	From Natural Microbe Screening to Sustained Chitinase Activity in Exogenous Hosts.	Chaulagain D, Shamabadi NS, Leslie SA, Karig DK.	ACS Synth Biol	10.1021/acssynbio.3c00637	2024
Enzymology	Insertion of the Fe_B cofactor in cNORs lacking metal inserting chaperones.	Appelgren S, Adelroth P.	FEBS Lett	10.1002/1873-3468.70007	2025
	Engineering bacterial cell morphology for the design of robust cell factories.	Lubbers M, Jaspers N, Claessen D.	Biochem Biophys Rep	10.1016/j.bbrep.2025.102076	2025
Genetics	Diversity and conservation of the genome architecture of phages infecting the Alphaproteobacteria.	Hyde JR, Armond T, Herring JA, Hope S, Grose JH, Breakwell DP, Pickett BE.	Microbiol Spectr	10.1128/spectrum.02827-23	2024
Metabolism	Structure of the Membrane-intrinsic Nitric Oxide Reductase from Roseobacter denitrificans.	Crow A, Matsuda Y, Arata H, Oubrie A.	Biochemistry	10.1021/acs.biochem.6b00332	2016
	Genome Sequence and Characterization of a Xanthorhodopsin-Containing, Aerobic Anoxygenic Phototrophic Rhodobacter Species, Isolated from Mesophilic Conditions at Yellowstone National Park.	Kyndt JA, Robertson S, Shoffstall IB, Ramaley RF, Meyer TE.	Microorganisms	10.3390/microorganisms10061169	2022
Proteome	Mix24X, a Lab-Assembled Reference to Evaluate Interpretation Procedures for Tandem Mass Spectrometry Proteotyping of Complex Samples.	Mappa C, Alpha-Bazin B, Pible O, Armengaud J.	Int J Mol Sci	10.3390/ijms24108634	2023
	Ultrafast excited state processes in Roseobacter denitrificans antennae: comparison of isolated complexes and native membranes.	Ferretti M, Duquesne K, Sturgis JN, van Grondelle R.	Phys Chem Chem Phys	10.1039/c4cp02986k	2014
	Chlorophyll a Synthesis in Rhodobacter sphaeroides by Chlorophyll Synthase of Nicotiana tabacum.	Kim J, Lee JK, Kim EJ.	Biology (Basel)	10.3390/biology12040573	2023
	Diversity of purple nonsulfur bacteria in shrimp ponds with varying mercury levels.	Mukkata K, Kantachote D, Wittayaweerasak B, Techkarnjanaruk S, Boonapatcharoen N.	Saudi J Biol Sci	10.1016/j.sjbs.2015.05.014	2016
Phylogeny	A novel roseobacter phage possesses features of podoviruses, siphoviruses, prophages and gene transfer agents.	Zhan Y, Huang S, Voget S, Simon M, Chen F.	Sci Rep	10.1038/srep30372	2016
Enzymology	The structure of RdDddP from Roseobacter denitrificans reveals that DMSP lyases in the DddP-family are metalloenzymes.	Hehemann JH, Law A, Redecke L, Boraston AB.	PLoS One	10.1371/journal.pone.0103128	2014
	Molecular origins and consequences of High-800 LH2 in Roseobacter denitrificans.	Duquesne K, Blanchard C, Sturgis JN.	Biochemistry	10.1021/bi200538j	2011
	Daily rhythmicity in coastal microbial mats.	Hornlein C, Confurius-Guns V, Stal LJ, Bolhuis H.	NPJ Biofilms Microbiomes	10.1038/s41522-018-0054-5	2018
	Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides.	Bland C, Bellanger L, Armengaud J.	J Proteome Res	10.1021/pr400774z	2014
Genetics	Extremophiles in an Antarctic Marine Ecosystem.	Dickinson I, Goodall-Copestake W, Thorne MA, Schlitt T, Avila-Jimenez ML, Pearce DA.	Microorganisms	10.3390/microorganisms4010008	2016
Genetics	Draft genomic sequence of a selenite-reducing bacterium, Paenirhodobacter enshiensis DW2-9(T).	Wang D, Zhu F, Zhu X, Zheng S, Wang R, Wang G.	Stand Genomic Sci	10.1186/s40793-015-0026-9	2015
Metabolism	The Heterotrophic Bacterium Cupriavidus pinatubonensis JMP134 Oxidizes Sulfide to Sulfate with Thiosulfate as a Key Intermediate.	Xin Y, Gao R, Cui F, Lu C, Liu H, Liu H, Xia Y, Xun L.	Appl Environ Microbiol	10.1128/aem.01835-20	2020
	Phenomenal Diversity of the Photosynthetic Apparatus Evolved in Aerobic Anoxygenic Phototrophs.	Yurkov V, Messner K.	Microorganisms	10.3390/microorganisms13112446	2025
	CryoEM reveals oligomeric isomers of a multienzyme complex and assembly mechanics.	Lee JKJ, Liu YT, Hu JJ, Aphasizheva I, Aphasizhev R, Zhou ZH.	J Struct Biol X	10.1016/j.yjsbx.2023.100088	2023
Metabolism	Energy transfer in an LH4-like light harvesting complex from the aerobic purple photosynthetic bacterium Roseobacter denitrificans.	Niedzwiedzki DM, Fuciman M, Frank HA, Blankenship RE.	Biochim Biophys Acta	10.1016/j.bbabio.2011.03.004	2011
Genetics	Revealing large metagenomic regions through long DNA fragment hybridization capture.	Gasc C, Peyret P.	Microbiome	10.1186/s40168-017-0251-0	2017
	High-resolution architecture of the outer membrane of the Gram-negative bacteria Roseobacter denitrificans.	Jaroslawski S, Duquesne K, Sturgis JN, Scheuring S.	Mol Microbiol	10.1111/j.1365-2958.2009.06926.x	2009
Metabolism	Characterization of the photosynthetic apparatus and proteome of Roseobacter denitrificans.	Tang K, Zong R, Zhang F, Xiao N, Jiao N.	Curr Microbiol	10.1007/s00284-009-9515-7	2010
Enzymology	Acquisition of pcnB [poly(A) polymerase I] genes via horizontal transfer from the beta, gamma-Proteobacteria.	Jones GH.	Microb Genom	10.1099/mgen.0.000508	2021
Metabolism	Oxygen control of nitrogen oxide respiration, focusing on alpha-proteobacteria.	Shapleigh JP.	Biochem Soc Trans	10.1042/bst0390179	2011
	Co-cultures of Pseudomonas aeruginosa and Roseobacter denitrificans reveal shifts in gene expression levels compared to solo cultures.	Conway CA, Esiobu N, Lopez JV.	ScientificWorldJournal	10.1100/2012/120108	2012
	Evidence of Interdomain Ammonium Cross-Feeding From Methylamine- and Glycine Betaine-Degrading Rhodobacteraceae to Diatoms as a Widespread Interaction in the Marine Phycosphere.	Zecher K, Hayes KR, Philipp B.	Front Microbiol	10.3389/fmicb.2020.533894	2020
Metabolism	Anoxygenic photosynthesis and photooxidative stress: a particular challenge for Roseobacter.	Berghoff BA, Glaeser J, Nuss AM, Zobawa M, Lottspeich F, Klug G.	Environ Microbiol	10.1111/j.1462-2920.2010.02381.x	2011
Metabolism	A widely distributed phosphate-insensitive phosphatase presents a route for rapid organophosphorus remineralization in the biosphere.	Lidbury IDEA, Scanlan DJ, Murphy ARJ, Christie-Oleza JA, Aguilo-Ferretjans MM, Hitchcock A, Daniell TJ.	Proc Natl Acad Sci U S A	10.1073/pnas.2118122119	2022
Transcriptome	Transcriptome and Deletion Mutant Analyses Revealed that an RpoH Family Sigma Factor Is Essential for Photosystem Production in Roseateles depolymerans under Carbon Starvation.	Suyama T, Kanno N, Matsukura S, Chihara K, Noda N, Hanada S.	Microbes Environ	10.1264/jsme2.me22072	2023
Metabolism	The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism.	Swingley WD, Sadekar S, Mastrian SD, Matthies HJ, Hao J, Ramos H, Acharya CR, Conrad AL, Taylor HL, Dejesa LC, Shah MK, O'huallachain ME, Lince MT, Blankenship RE, Beatty JT, Touchman JW.	J Bacteriol	10.1128/jb.01390-06	2007
Genetics	Linking Copper-Associated Signal Transduction Systems with Their Environment in Marine Bacteria.	Gautam P, Erill I, Cusick KD.	Microorganisms	10.3390/microorganisms11041012	2023
Metabolism	Peroxidase activity and involvement in the oxidative stress response of roseobacter denitrificans truncated hemoglobin.	Wang Y, Barbeau X, Bilimoria A, Lague P, Couture M, Tang JK.	PLoS One	10.1371/journal.pone.0117768	2015
Metabolism	The microbial carbon pump: from genes to ecosystems.	Jiao N, Zheng Q.	Appl Environ Microbiol	10.1128/aem.05640-11	2011
Metabolism	Diel changes and diversity of pufM expression in freshwater communities of anoxygenic phototrophic bacteria.	Fecskeova LK, Piwosz K, Hanusova M, Nedoma J, Znachor P, Koblizek M.	Sci Rep	10.1038/s41598-019-55210-x	2019
Genetics	Gain and loss of phototrophic genes revealed by comparison of two Citromicrobium bacterial genomes.	Zheng Q, Zhang R, Fogg PC, Beatty JT, Wang Y, Jiao N.	PLoS One	10.1371/journal.pone.0035790	2012
Metabolism	Isotopically labeled sulfur compounds and synthetic selenium and tellurium analogues to study sulfur metabolism in marine bacteria.	Brock NL, Citron CA, Zell C, Berger M, Wagner-Dobler I, Petersen J, Brinkhoff T, Simon M, Dickschat JS.	Beilstein J Org Chem	10.3762/bjoc.9.108	2013
	Acyl-homoserine lactone-based quorum sensing in the Roseobacter clade: complex cell-to-cell communication controls multiple physiologies.	Cude WN, Buchan A.	Front Microbiol	10.3389/fmicb.2013.00336	2013
Enzymology	Structural characterization of a binuclear center of a Cu-containing NO reductase homologue from Roseobacter denitrificans: EPR and resonance Raman studies.	Matsuda Y, Uchida T, Hori H, Kitagawa T, Arata H.	Biochim Biophys Acta	10.1016/j.bbabio.2004.01.004	2004
Enzymology	Identification of membrane-bound quinoprotein inositol dehydrogenase in Gluconobacter oxydans ATCC 621H.	Holscher T, Weinert-Sepalage D, Gorisch H.	Microbiology (Reading)	10.1099/mic.0.2006/002196-0	2007
Enzymology	Iron-sulfur cluster-dependent catalysis of chlorophyllide a oxidoreductase from Roseobacter denitrificans.	Kiesel S, Watzlich D, Lange C, Reijerse E, Brocker MJ, Rudiger W, Lubitz W, Scheer H, Moser J, Jahn D.	J Biol Chem	10.1074/jbc.m114.617761	2015
Metabolism	Protozoan ALKBH8 oxygenases display both DNA repair and tRNA modification activities.	Zdzalik D, Vagbo CB, Kirpekar F, Davydova E, Puscian A, Maciejewska AM, Krokan HE, Klungland A, Tudek B, van den Born E, Falnes PO.	PLoS One	10.1371/journal.pone.0098729	2014
Genetics	A Novel Benthic Phage Infecting Shewanella with Strong Replication Ability.	Wang Z, Zhao J, Wang L, Li C, Liu J, Zhang L, Zhang Y.	Viruses	10.3390/v11111081	2019
	Enhanced copper-resistance gene repertoire in Alteromonas macleodii strains isolated from copper-treated marine coatings.	Cusick K, Iturbide A, Gautam P, Price A, Polson S, MacDonald M, Erill I.	PLoS One	10.1371/journal.pone.0257800	2021
	Transcriptional Regulation of the Creatine Utilization Genes of Corynebacterium glutamicum ATCC 14067 by AmtR, a Central Nitrogen Regulator.	Zhang H, Ouyang Z, Zhao N, Han S, Zheng S.	Front Bioeng Biotechnol	10.3389/fbioe.2022.816628	2022
	Diversity of Phototrophic Genes Suggests Multiple Bacteria May Be Able to Exploit Sunlight in Exposed Soils from the Sør Rondane Mountains, East Antarctica.	Tahon G, Tytgat B, Willems A.	Front Microbiol	10.3389/fmicb.2016.02026	2016
Enzymology	Recovery and purification of bikaverin produced by Fusarium oxysporum CCT7620.	Mendonca M, Santos MCD, Pereira AK, Fill TP, Forte MBS, Bicas JL.	Food Chem X	10.1016/j.fochx.2021.100136	2021
Metabolism	CceR and AkgR regulate central carbon and energy metabolism in alphaproteobacteria.	Imam S, Noguera DR, Donohue TJ.	mBio	10.1128/mbio.02461-14	2015
	Aminolipids elicit functional trade-offs between competitiveness and bacteriophage attachment in Ruegeria pomeroyi.	Stirrup R, Mausz MA, Silvano E, Murphy A, Guillonneau R, Quareshy M, Rihtman B, Ferretjans MA, He R, Todd JD, Chen F, Scanlan DJ, Chen Y.	ISME J	10.1038/s41396-022-01346-0	2023
Genetics	Metagenomic sequencing of marine periphyton: taxonomic and functional insights into biofilm communities.	Sanli K, Bengtsson-Palme J, Nilsson RH, Kristiansson E, Alm Rosenblad M, Blanck H, Eriksson KM.	Front Microbiol	10.3389/fmicb.2015.01192	2015
	The Biogeographic Pattern of Microbial Functional Genes along an Altitudinal Gradient of the Tibetan Pasture.	Qi Q, Zhao M, Wang S, Ma X, Wang Y, Gao Y, Lin Q, Li X, Gu B, Li G, Zhou J, Yang Y.	Front Microbiol	10.3389/fmicb.2017.00976	2017
	The blue light-dependent LOV-protein LdaP of Dinoroseobacter shibae acts as antirepressor of the PpsR repressor, regulating photosynthetic gene cluster expression.	Pucelik S, Becker M, Heyber S, Wohlbrand L, Rabus R, Jahn D, Hartig E.	Front Microbiol	10.3389/fmicb.2024.1351297	2024
Metabolism	Nitric oxide-reductase homologue that contains a copper atom and has cytochrome c-oxidase activity from an aerobic phototrophic bacterium Roseobacter denitrificans.	Matsuda Y, Inamori K, Osaki T, Eguchi A, Watanabe A, Kawabata S, Iba K, Arata H.	J Biochem	10.1093/oxfordjournals.jbchem.a003167	2002
	Sequence analysis reveals new membrane anchor of reaction centre-bound cytochromes possibly related to PufX.	Hucke O, Schiltz E, Drews G, Labahn A.	FEBS Lett	10.1016/s0014-5793(02)03899-1	2003
Metabolism	Functional annotation of orthologs in metagenomes: a case study of genes for the transformation of oceanic dimethylsulfoniopropionate.	Gonzalez JM, Hernandez L, Manzano I, Pedros-Alio C.	ISME J	10.1038/s41396-019-0347-6	2019
	Genetic tools for the investigation of Roseobacter clade bacteria.	Piekarski T, Buchholz I, Drepper T, Schobert M, Wagner-Doebler I, Tielen P, Jahn D.	BMC Microbiol	10.1186/1471-2180-9-265	2009
Genetics	Correction of sequence-dependent ambiguous bases (Ns) from the 454 pyrosequencing system.	Shin S, Park J.	Nucleic Acids Res	10.1093/nar/gku070	2014
Genetics	Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics.	Hayoun K, Geersens E, Laczny CC, Halder R, Lazaro Sanchez C, Manna A, Bringel F, Ryckelynck M, Wilmes P, Muller EEL, Alpha-Bazin B, Armengaud J, Vuilleumier S.	Microorganisms	10.3390/microorganisms8121876	2020
	Adaptation to Photooxidative Stress: Common and Special Strategies of the Alphaproteobacteria Rhodobacter sphaeroides and Rhodobacter capsulatus.	Licht MK, Nuss AM, Volk M, Konzer A, Beckstette M, Berghoff BA, Klug G.	Microorganisms	10.3390/microorganisms8020283	2020
Metabolism	Respiratory electron transport and light-induced energy transduction in membranes from the aerobic photosynthetic bacterium Roseobacter denitrificans.	Candela M, Zaccherini E, Zannoni D.	Arch Microbiol	10.1007/s002030100251	2001
Enzymology	Nitric oxide reductases of prokaryotes with emphasis on the respiratory, heme-copper oxidase type.	Zumft WG.	J Inorg Biochem	10.1016/j.jinorgbio.2004.09.024	2005
Genetics	Patterns and architecture of genomic islands in marine bacteria.	Fernandez-Gomez B, Fernandez-Guerra A, Casamayor EO, Gonzalez JM, Pedros-Alio C, Acinas SG.	BMC Genomics	10.1186/1471-2164-13-347	2012
Metabolism	Conserved small mRNA with an unique, extended Shine-Dalgarno sequence.	Hahn J, Thalmann S, Migur A, von Boeselager RF, Kubatova N, Kubareva E, Schwalbe H, Evguenieva-Hackenberg E.	RNA Biol	10.1080/15476286.2016.1256534	2017
	Genome-Wide Discovery of Putative sRNAs in Paracoccus denitrificans Expressed under Nitrous Oxide Emitting Conditions.	Gaimster H, Chalklen L, Alston M, Munnoch JT, Richardson DJ, Gates AJ, Rowley G.	Front Microbiol	10.3389/fmicb.2016.01806	2016
Enzymology	Distribution and origin of oxygen-dependent and oxygen-independent forms of Mg-protoporphyrin monomethylester cyclase among phototrophic proteobacteria.	Boldareva-Nuianzina EN, Blahova Z, Sobotka R, Koblizek M.	Appl Environ Microbiol	10.1128/aem.00104-13	2013
Phylogeny	Differentiation of newly described antarctic bacterial isolates related to Roseobacter species based on 16S-23S rDNA internal transcribed spacer sequences.	Soller R, Hirsch P, Blohm D, Labrenz M.	Int J Syst Evol Microbiol	10.1099/00207713-50-2-909	2000
	An Intact Cell Bioluminescence-Based Assay for the Simple and Rapid Diagnosis of Urinary Tract Infection.	Reyes S, Le N, Fuentes MD, Upegui J, Dikici E, Broyles D, Quinto E, Daunert S, Deo SK.	Int J Mol Sci	10.3390/ijms21145015	2020
	Nutrient recycling facilitates long-term stability of marine microbial phototroph-heterotroph interactions.	Christie-Oleza JA, Sousoni D, Lloyd M, Armengaud J, Scanlan DJ.	Nat Microbiol	10.1038/nmicrobiol.2017.100	2017
Metabolism	Photo-induced cyclic electron transfer involving cytochrome bc1 complex and reaction center in the obligate aerobic phototroph Roseobacter denitrificans.	Schwarze C, Carluccio AV, Venturoli G, Labahn A.	Eur J Biochem	10.1046/j.1432-1327.2000.01018.x	2000
	Characteristics and Evolutionary Analysis of Photosynthetic Gene Clusters on Extrachromosomal Replicons: from Streamlined Plasmids to Chromids.	Liu Y, Zheng Q, Lin W, Jiao N.	mSystems	10.1128/msystems.00358-19	2019
	Bacterial surface interactions with organic colloidal particles: Nanoscale hotspots of organic matter in the ocean.	Patel N, Guillemette R, Lal R, Azam F.	PLoS One	10.1371/journal.pone.0272329	2022
Genetics	Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.	Papudeshi B, Haggerty JM, Doane M, Morris MM, Walsh K, Beattie DT, Pande D, Zaeri P, Silva GGZ, Thompson F, Edwards RA, Dinsdale EA.	BMC Genomics	10.1186/s12864-017-4294-1	2017
Enzymology	Characterization of porin from Roseobacter denitrificans.	Neumann U, Maier E, Schiltz E, Weckesser J, Benz R.	Antonie Van Leeuwenhoek	10.1023/a:1000262802010	1997
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	The ECF sigma factor, PSPTO_1043, in Pseudomonas syringae pv. tomato DC3000 is induced by oxidative stress and regulates genes involved in oxidative stress response.	Butcher BG, Bao Z, Wilson J, Stodghill P, Swingle B, Filiatrault M, Schneider D, Cartinhour S.	PLoS One	10.1371/journal.pone.0180340	2017
Phylogeny	Lipopolysaccharide and porin of Roseobacter denitrificans, confirming its phylogenetic relationship to the alpha-3 subgroup of Proteobacteria.	Neumann U, Mayer H, Schiltz E, Benz R, Weckesser J.	Microbiology (Reading)	10.1099/13500872-141-8-2013	1995
Transcriptome	Transcriptomic Response of Nitrosomonas europaea Transitioned from Ammonia- to Oxygen-Limited Steady-State Growth.	Sedlacek CJ, Giguere AT, Dobie MD, Mellbye BL, Ferrell RV, Woebken D, Sayavedra-Soto LA, Bottomley PJ, Daims H, Wagner M, Pjevac P.	mSystems	10.1128/msystems.00562-19	2020
Metabolism	A Thermostable Bilirubin-Oxidizing Enzyme from Activated Sludge Isolated by a Metagenomic Approach.	Kimura N, Kamagata Y.	Microbes Environ	10.1264/jsme2.me16106	2016
Genetics	Phylogenomic Framework for Taxonomic Delineation of Paracoccus spp. and Exploration of Core-Pan Genome.	Puri A, Bajaj A, Lal S, Singh Y, Lal R.	Indian J Microbiol	10.1007/s12088-021-00929-3	2021
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	Genome Structure of the Opportunistic Pathogen Paracoccus yeei (Alphaproteobacteria) and Identification of Putative Virulence Factors.	Lasek R, Szuplewska M, Mitura M, Decewicz P, Chmielowska C, Pawlot A, Sentkowska D, Czarnecki J, Bartosik D.	Front Microbiol	10.3389/fmicb.2018.02553	2018
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	Origin of the two carbonyl oxygens of bacteriochlorophyll a. Demonstration of two different pathways for the formation of ring E in Rhodobacter sphaeroides and Roseobacter denitrificans, and a common hydratase mechanism for 3-acetyl group formation.	Porra RJ, Schafer W, Gad'on N, Katheder I, Drews G, Scheer H.	Eur J Biochem	10.1111/j.1432-1033.1996.0085u.x	1996
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Metabolism	Influence of light on carbon utilization in aerobic anoxygenic phototrophs.	Hauruseu D, Koblizek M.	Appl Environ Microbiol	10.1128/aem.01747-12	2012
Metabolism	Evidence for a functional similarity between the two-component regulatory systems RegSR, ActSR, and RegBA (PrrBA) in alpha-Proteobacteria.	Emmerich R, Hennecke H, Fischer HM.	Arch Microbiol	10.1007/s002030000207	2000
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Metabolism	Structure and function of the tetraheme cytochrome associated to the reaction center of Roseobacter denitrificans.	Garcia D, Richaud P, Breton J, Vermeglio A.	Biochimie	10.1016/0300-9084(94)90143-0	1994
Metabolism	The 5-Ketofructose Reductase of Gluconobacter sp. Strain CHM43 Is a Novel Class in the Shikimate Dehydrogenase Family.	Nguyen TM, Goto M, Noda S, Matsutani M, Hodoya Y, Kataoka N, Adachi O, Matsushita K, Yakushi T.	J Bacteriol	10.1128/jb.00558-20	2021
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Metabolism	Structural and functional analyses of photosynthetic regulatory genes regA and regB from Rhodovulum sulfidophilum, Roseobacter denitrificans, and Rhodobacter capsulatus.	Masuda S, Matsumoto Y, Nagashima KV, Shimada K, Inoue K, Bauer CE, Matsuura K.	J Bacteriol	10.1128/jb.181.14.4205-4215.1999	1999
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Enzymology	Purification and properties of trimethylamine N-oxide reductase from aerobic photosynthetic bacterium Roseobacter denitrificans.	Arata H, Shimizu M, Takamiya K.	J Biochem	10.1093/oxfordjournals.jbchem.a123923	1992
Metabolism	Control of peripheral light-harvesting complex synthesis by a bacteriophytochrome in the aerobic photosynthetic bacterium Bradyrhizobium strain BTAi1.	Jaubert M, Vuillet L, Hannibal L, Adriano JM, Fardoux J, Bouyer P, Bonaldi K, Fleischman D, Giraud E, Vermeglio A.	J Bacteriol	10.1128/jb.00524-08	2008
Enzymology	Characterization of a Metal-Resistant Bacillus Strain With a High Molybdate Affinity ModA From Contaminated Sediments at the Oak Ridge Reservation.	Ge X, Thorgersen MP, Poole FL, Deutschbauer AM, Chandonia JM, Novichkov PS, Gushgari-Doyle S, Lui LM, Nielsen T, Chakraborty R, Adams PD, Arkin AP, Hazen TC, Adams MWW.	Front Microbiol	10.3389/fmicb.2020.587127	2020
Metabolism	Carbohydrate catabolism in Phaeobacter inhibens DSM 17395, a member of the marine roseobacter clade.	Wiegmann K, Hensler M, Wohlbrand L, Ulbrich M, Schomburg D, Rabus R.	Appl Environ Microbiol	10.1128/aem.00719-14	2014
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Enzymology	Identification and characterization of the 'missing' terminal enzyme for siroheme biosynthesis in alpha-proteobacteria.	Bali S, Rollauer S, Roversi P, Raux-Deery E, Lea SM, Warren MJ, Ferguson SJ.	Mol Microbiol	10.1111/mmi.12542	2014
Metabolism	Comparative study of the gating motif and C-type inactivation in prokaryotic voltage-gated sodium channels.	Irie K, Kitagawa K, Nagura H, Imai T, Shimomura T, Fujiyoshi Y.	J Biol Chem	10.1074/jbc.m109.057455	2010
Metabolism	Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria.	Palovaara J, Akram N, Baltar F, Bunse C, Forsberg J, Pedros-Alio C, Gonzalez JM, Pinhassi J.	Proc Natl Acad Sci U S A	10.1073/pnas.1402617111	2014
Metabolism	Adaptation of Dinoroseobacter shibae to oxidative stress and the specific role of RirA.	Beier N, Kucklick M, Fuchs S, Mustafayeva A, Behringer M, Hartig E, Jahn D, Engelmann S.	PLoS One	10.1371/journal.pone.0248865	2021
Genetics	BinSanity: unsupervised clustering of environmental microbial assemblies using coverage and affinity propagation.	Graham ED, Heidelberg JF, Tully BJ.	PeerJ	10.7717/peerj.3035	2017
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	Large Diversity and Original Structures of Acyl-Homoserine Lactones in Strain MOLA 401, a Marine Rhodobacteraceae Bacterium.	Doberva M, Stien D, Sorres J, Hue N, Sanchez-Ferandin S, Eparvier V, Ferandin Y, Lebaron P, Lami R.	Front Microbiol	10.3389/fmicb.2017.01152	2017
Metabolism	Trimethylamine N-oxide respiration by aerobic photosynthetic bacterium, Erythrobacter sp. OCh 114.	Arata H, Serikawa Y, Takamiya K.	J Biochem	10.1093/oxfordjournals.jbchem.a122371	1988
Metabolism	Characterization of the mycobacterial acyl-CoA carboxylase holo complexes reveals their functional expansion into amino acid catabolism.	Ehebauer MT, Zimmermann M, Jakobi AJ, Noens EE, Laubitz D, Cichocki B, Marrakchi H, Laneelle MA, Daffe M, Sachse C, Dziembowski A, Sauer U, Wilmanns M.	PLoS Pathog	10.1371/journal.ppat.1004623	2015
Metabolism	Functional interactions between nitrite reductase and nitric oxide reductase from Paracoccus denitrificans.	Albertsson I, Sjoholm J, Ter Beek J, Watmough NJ, Widengren J, Adelroth P.	Sci Rep	10.1038/s41598-019-53553-z	2019
Phylogeny	Aerobic anoxygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats.	Allgaier M, Uphoff H, Felske A, Wagner-Dobler I.	Appl Environ Microbiol	10.1128/aem.69.9.5051-5059.2003	2003
Genetics	Genomic, proteomic and bioinformatic analysis of two temperate phages in Roseobacter clade bacteria isolated from the deep-sea water.	Tang K, Lin D, Zheng Q, Liu K, Yang Y, Han Y, Jiao N.	BMC Genomics	10.1186/s12864-017-3886-0	2017
Metabolism	Swimming in light: a large-scale computational analysis of the metabolism of Dinoroseobacter shibae.	Rex R, Bill N, Schmidt-Hohagen K, Schomburg D.	PLoS Comput Biol	10.1371/journal.pcbi.1003224	2013
Metabolism	Dynamics of metabolic activities and gene expression in the Roseobacter clade bacterium Phaeobacter sp. strain MED193 during growth with thiosulfate.	Muthusamy S, Baltar F, Gonzalez JM, Pinhassi J.	Appl Environ Microbiol	10.1128/aem.02038-14	2014
Enzymology	Group II truncated haemoglobin YjbI prevents reactive oxygen species-induced protein aggregation in Bacillus subtilis.	Imai T, Tobe R, Honda K, Tanaka M, Kawamoto J, Mihara H.	Elife	10.7554/elife.70467	2022
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Genetics	High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.	Christie-Oleza JA, Miotello G, Armengaud J.	BMC Genomics	10.1186/1471-2164-13-73	2012
Phylogeny	Correlating carbon monoxide oxidation with cox genes in the abundant Marine Roseobacter Clade.	Cunliffe M.	ISME J	10.1038/ismej.2010.170	2011
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	Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment.	Breider S, Teshima H, Petersen J, Chertkov O, Dalingault H, Chen A, Pati A, Ivanova N, Lapidus A, Goodwin LA, Chain P, Detter JC, Rohde M, Tindall BJ, Kyrpides NC, Woyke T, Simon M, Goker M, Klenk HP, Brinkhoff T.	Stand Genomic Sci	10.4056/sigs.3828824	2014
Metabolism	Sulfolipids dramatically decrease phosphorus demand by picocyanobacteria in oligotrophic marine environments.	Van Mooy BA, Rocap G, Fredricks HF, Evans CT, Devol AH.	Proc Natl Acad Sci U S A	10.1073/pnas.0600540103	2006
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Metabolism	Biofilm plasmids with a rhamnose operon are widely distributed determinants of the 'swim-or-stick' lifestyle in roseobacters.	Michael V, Frank O, Bartling P, Scheuner C, Goker M, Brinkmann H, Petersen J.	ISME J	10.1038/ismej.2016.30	2016
Metabolism	Solitary BioY proteins mediate biotin transport into recombinant Escherichia coli.	Finkenwirth F, Kirsch F, Eitinger T.	J Bacteriol	10.1128/jb.00350-13	2013
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Metabolism	Engineering prokaryotic channels for control of mammalian tissue excitability.	Nguyen HX, Kirkton RD, Bursac N.	Nat Commun	10.1038/ncomms13132	2016
Phylogeny	Bioinformatics and functional analysis define four distinct groups of AlkB DNA-dioxygenases in bacteria.	van den Born E, Bekkelund A, Moen MN, Omelchenko MV, Klungland A, Falnes PO.	Nucleic Acids Res	10.1093/nar/gkp774	2009
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Metabolism	Insights into Nitrate-Reducing Fe(II) Oxidation Mechanisms through Analysis of Cell-Mineral Associations, Cell Encrustation, and Mineralogy in the Chemolithoautotrophic Enrichment Culture KS.	Nordhoff M, Tominski C, Halama M, Byrne JM, Obst M, Kleindienst S, Behrens S, Kappler A.	Appl Environ Microbiol	10.1128/aem.00752-17	2017
	Genomic diversity of bacteriophages infecting Rhodobacter capsulatus and their relatedness to its gene transfer agent RcGTA.	Rapala J, Miller B, Garcia M, Dolan M, Bockman M, Hansson M, Russell DA, Garlena RA, Cresawn SG, Westbye AB, Beatty JT, Alvey RM, Bollivar DW.	PLoS One	10.1371/journal.pone.0255262	2021
	Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome.	Durham BP, Grote J, Whittaker KA, Bender SJ, Luo H, Grim SL, Brown JM, Casey JR, Dron A, Florez-Leiva L, Krupke A, Luria CM, Mine AH, Nigro OD, Pather S, Talarmin A, Wear EK, Weber TS, Wilson JM, Church MJ, DeLong EF, Karl DM, Steward GF, Eppley JM, Kyrpides NC, Schuster S, Rappe MS.	Stand Genomic Sci	10.4056/sigs.4998989	2014
Proteome	Simplified bacterial "pore" channel provides insight into the assembly, stability, and structure of sodium channels.	McCusker EC, D'Avanzo N, Nichols CG, Wallace BA.	J Biol Chem	10.1074/jbc.c111.228122	2011
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Metabolism	New insights into the photochemistry of carotenoid spheroidenone in light-harvesting complex 2 from the purple bacterium Rhodobacter sphaeroides.	Niedzwiedzki DM, Dilbeck PL, Tang Q, Martin EC, Bocian DF, Hunter CN, Holten D.	Photosynth Res	10.1007/s11120-016-0322-2	2017
Metabolism	Heme ligand identification and redox properties of the cytochrome c synthetase, CcmF.	San Francisco B, Bretsnyder EC, Rodgers KR, Kranz RG.	Biochemistry	10.1021/bi201508t	2011
Genetics	Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus.	Tang KH, Barry K, Chertkov O, Dalin E, Han CS, Hauser LJ, Honchak BM, Karbach LE, Land ML, Lapidus A, Larimer FW, Mikhailova N, Pitluck S, Pierson BK, Blankenship RE.	BMC Genomics	10.1186/1471-2164-12-334	2011
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Genetics	Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated 'Omics Approach.	Lindemann SR, Mobberley JM, Cole JK, Markillie LM, Taylor RC, Huang E, Chrisler WB, Wiley HS, Lipton MS, Nelson WC, Fredrickson JK, Romine MF.	Front Microbiol	10.3389/fmicb.2017.01020	2017
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Metabolism	Roseobacter clade bacteria are abundant in coastal sediments and encode a novel combination of sulfur oxidation genes.	Lenk S, Moraru C, Hahnke S, Arnds J, Richter M, Kube M, Reinhardt R, Brinkhoff T, Harder J, Amann R, Mussmann M.	ISME J	10.1038/ismej.2012.66	2012
Genetics	The genome of Heliobacterium modesticaldum, a phototrophic representative of the Firmicutes containing the simplest photosynthetic apparatus.	Sattley WM, Madigan MT, Swingley WD, Cheung PC, Clocksin KM, Conrad AL, Dejesa LC, Honchak BM, Jung DO, Karbach LE, Kurdoglu A, Lahiri S, Mastrian SD, Page LE, Taylor HL, Wang ZT, Raymond J, Chen M, Blankenship RE, Touchman JW.	J Bacteriol	10.1128/jb.00299-08	2008
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Pathogenicity	Biocompatibilities and biodegradation of poly(3-hydroxybutyrate-co-3-hydroxyvalerate)s produced by a model metabolic reaction-based system.	Napathorn SC.	BMC Microbiol	10.1186/s12866-014-0285-4	2014
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Metabolism	Bacteriophages of lactic acid bacteria and their impact on milk fermentations.	Garneau JE, Moineau S.	Microb Cell Fact	10.1186/1475-2859-10-s1-s20	2011
Phylogeny	Phaeobacter and Ruegeria species of the Roseobacter clade colonize separate niches in a Danish Turbot (Scophthalmus maximus)-rearing farm and antagonize Vibrio anguillarum under different growth conditions.	Porsby CH, Nielsen KF, Gram L.	Appl Environ Microbiol	10.1128/aem.01738-08	2008
Enzymology	Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples.	Braker G, Fesefeldt A, Witzel KP.	Appl Environ Microbiol	10.1128/aem.64.10.3769-3775.1998	1998
Metabolism	Unique glycine-activated riboswitch linked to glycine-serine auxotrophy in SAR11.	Tripp HJ, Schwalbach MS, Meyer MM, Kitner JB, Breaker RR, Giovannoni SJ.	Environ Microbiol	10.1111/j.1462-2920.2008.01758.x	2009
Metabolism	Role of norEF in denitrification, elucidated by physiological experiments with Rhodobacter sphaeroides.	Bergaust LL, Hartsock A, Liu B, Bakken LR, Shapleigh JP.	J Bacteriol	10.1128/jb.00003-14	2014
Enzymology	Broadened Substrate Specificity of 3-Hydroxyethyl Bacteriochlorophyllide a Dehydrogenase (BchC) Indicates a New Route for the Biosynthesis of Bacteriochlorophyll a.	Lange C, Kiesel S, Peters S, Virus S, Scheer H, Jahn D, Moser J.	J Biol Chem	10.1074/jbc.m115.660555	2015
Metabolism	Chimeric nitrogenase-like enzymes of (bacterio)chlorophyll biosynthesis.	Watzlich D, Brocker MJ, Uliczka F, Ribbe M, Virus S, Jahn D, Moser J.	J Biol Chem	10.1074/jbc.m901331200	2009
Genetics	Comparative genomics of cultured and uncultured strains suggests genes essential for free-living growth of Liberibacter.	Fagen JR, Leonard MT, McCullough CM, Edirisinghe JN, Henry CS, Davis MJ, Triplett EW.	PLoS One	10.1371/journal.pone.0084469	2014
Phylogeny	Abundance, depth distribution, and composition of aerobic bacteriochlorophyll a-producing bacteria in four basins of the central Baltic Sea.	Salka I, Moulisova V, Koblizek M, Jost G, Jurgens K, Labrenz M.	Appl Environ Microbiol	10.1128/aem.02447-07	2008
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Metabolism	Photoprotection in a purple phototrophic bacterium mediated by oxygen-dependent alteration of carotenoid excited-state properties.	Slouf V, Chabera P, Olsen JD, Martin EC, Qian P, Hunter CN, Polivka T.	Proc Natl Acad Sci U S A	10.1073/pnas.1201413109	2012
	You are what you talk: quorum sensing induces individual morphologies and cell division modes in Dinoroseobacter shibae.	Patzelt D, Wang H, Buchholz I, Rohde M, Grobe L, Pradella S, Neumann A, Schulz S, Heyber S, Munch K, Munch R, Jahn D, Wagner-Dobler I, Tomasch J.	ISME J	10.1038/ismej.2013.107	2013
Genetics	Comparative genomics defines the core genome of the growing N4-like phage genus and identifies N4-like Roseophage specific genes.	Chan JZ, Millard AD, Mann NH, Schafer H.	Front Microbiol	10.3389/fmicb.2014.00506	2014
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Phylogeny	The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella.	Audic S, Lescot M, Claverie JM, Cloeckaert A, Zygmunt MS.	BMC Evol Biol	10.1186/1471-2148-11-200	2011
Metabolism	Diverse bacterial PKS sequences derived from okadaic acid-producing dinoflagellates.	Perez R, Liu L, Lopez J, An T, Rein KS.	Mar Drugs	10.3390/md20080009	2008
	Metabolomic and Metagenomic Analysis of Two Crude Oil Production Pipelines Experiencing Differential Rates of Corrosion.	Bonifay V, Wawrik B, Sunner J, Snodgrass EC, Aydin E, Duncan KE, Callaghan AV, Oldham A, Liengen T, Beech I.	Front Microbiol	10.3389/fmicb.2017.00099	2017
Metabolism	Intensive nitrogen loss over the Omani Shelf due to anammox coupled with dissimilatory nitrite reduction to ammonium.	Jensen MM, Lam P, Revsbech NP, Nagel B, Gaye B, Jetten MS, Kuypers MM.	ISME J	10.1038/ismej.2011.44	2011
Metabolism	Biological and Bioinspired Inorganic N-N Bond-Forming Reactions.	Ferousi C, Majer SH, DiMucci IM, Lancaster KM.	Chem Rev	10.1021/acs.chemrev.9b00629	2020
Genetics	Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life.	Thole S, Kalhoefer D, Voget S, Berger M, Engelhardt T, Liesegang H, Wollherr A, Kjelleberg S, Daniel R, Simon M, Thomas T, Brinkhoff T.	ISME J	10.1038/ismej.2012.62	2012
Metabolism	Conserved chloroplast open-reading frame ycf54 is required for activity of the magnesium protoporphyrin monomethylester oxidative cyclase in Synechocystis PCC 6803.	Hollingshead S, Kopecna J, Jackson PJ, Canniffe DP, Davison PA, Dickman MJ, Sobotka R, Hunter CN.	J Biol Chem	10.1074/jbc.m112.352526	2012
Metabolism	Carbon flow of heliobacteria is related more to clostridia than to the green sulfur bacteria.	Tang KH, Feng X, Zhuang WQ, Alvarez-Cohen L, Blankenship RE, Tang YJ.	J Biol Chem	10.1074/jbc.m110.163303	2010
Metabolism	Effect of Bradyrhizobium photosynthesis on stem nodulation of Aeschynomene sensitiva.	Giraud E, Hannibal L, Fardoux J, Vermeglio A, Dreyfus B.	Proc Natl Acad Sci U S A	10.1073/pnas.250484097	2000
Metabolism	Transcriptional response of the photoheterotrophic marine bacterium Dinoroseobacter shibae to changing light regimes.	Tomasch J, Gohl R, Bunk B, Diez MS, Wagner-Dobler I.	ISME J	10.1038/ismej.2011.68	2011
	Characterization of Pustular Mats and Related Rivularia-Rich Laminations in Oncoids From the Laguna Negra Lake (Argentina).	Mlewski EC, Pisapia C, Gomez F, Lecourt L, Soto Rueda E, Benzerara K, Menez B, Borensztajn S, Jamme F, Refregiers M, Gerard E.	Front Microbiol	10.3389/fmicb.2018.00996	2018
Metabolism	The PuhB protein of Rhodobacter capsulatus functions in photosynthetic reaction center assembly with a secondary effect on light-harvesting complex 1.	Aklujkar M, Prince RC, Beatty JT.	J Bacteriol	10.1128/jb.187.4.1334-1343.2005	2005
Metabolism	Role of the AcsF protein in Chloroflexus aurantiacus.	Tang KH, Wen J, Li X, Blankenship RE.	J Bacteriol	10.1128/jb.00110-09	2009
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Metabolism	Biochemical, Kinetic, and Spectroscopic Characterization of Ruegeria pomeroyi DddW--A Mononuclear Iron-Dependent DMSP Lyase.	Brummett AE, Schnicker NJ, Crider A, Todd JD, Dey M.	PLoS One	10.1371/journal.pone.0127288	2015
Metabolism	Denitrifying alphaproteobacteria from the Arabian Sea that express nosZ, the gene encoding nitrous oxide reductase, in oxic and suboxic waters.	Wyman M, Hodgson S, Bird C.	Appl Environ Microbiol	10.1128/aem.03705-12	2013
Genetics	Phylogenetic distribution and evolutionary history of bacterial DEAD-Box proteins.	Lopez-Ramirez V, Alcaraz LD, Moreno-Hagelsieb G, Olmedo-Alvarez G.	J Mol Evol	10.1007/s00239-011-9441-8	2011
Enzymology	Proteomic responses of Roseobacter litoralis OCh149 to starvation and light regimen.	Zong R, Jiao N.	Microbes Environ	10.1264/jsme2.me12029	2012
Metabolism	Functional assignment of multiple catabolic pathways for D-apiose.	Carter MS, Zhang X, Huang H, Bouvier JT, Francisco BS, Vetting MW, Al-Obaidi N, Bonanno JB, Ghosh A, Zallot RG, Andersen HM, Almo SC, Gerlt JA.	Nat Chem Biol	10.1038/s41589-018-0067-7	2018
Metabolism	Metabolic flexibility revealed in the genome of the cyst-forming alpha-1 proteobacterium Rhodospirillum centenum.	Lu YK, Marden J, Han M, Swingley WD, Mastrian SD, Chowdhury SR, Hao J, Helmy T, Kim S, Kurdoglu AA, Matthies HJ, Rollo D, Stothard P, Blankenship RE, Bauer CE, Touchman JW.	BMC Genomics	10.1186/1471-2164-11-325	2010
Metabolism	Bifurcated degradative pathway of 3-sulfolactate in Roseovarius nubinhibens ISM via sulfoacetaldehyde acetyltransferase and (S)-cysteate sulfolyase.	Denger K, Mayer J, Buhmann M, Weinitschke S, Smits TH, Cook AM.	J Bacteriol	10.1128/jb.00569-09	2009
Metabolism	Potential role of nitrite for abiotic Fe(II) oxidation and cell encrustation during nitrate reduction by denitrifying bacteria.	Klueglein N, Zeitvogel F, Stierhof YD, Floetenmeyer M, Konhauser KO, Kappler A, Obst M.	Appl Environ Microbiol	10.1128/aem.03277-13	2014
Metabolism	DegS and RseP homologous proteases are involved in singlet oxygen dependent activation of RpoE in Rhodobacter sphaeroides.	Nuss AM, Adnan F, Weber L, Berghoff BA, Glaeser J, Klug G.	PLoS One	10.1371/journal.pone.0079520	2013
Metabolism	Diurnal rhythms result in significant changes in the cellular protein complement in the cyanobacterium Cyanothece 51142.	Stockel J, Jacobs JM, Elvitigala TR, Liberton M, Welsh EA, Polpitiya AD, Gritsenko MA, Nicora CD, Koppenaal DW, Smith RD, Pakrasi HB.	PLoS One	10.1371/journal.pone.0016680	2011
Metabolism	Cyclic GMP controls Rhodospirillum centenum cyst development.	Marden JN, Dong Q, Roychowdhury S, Berleman JE, Bauer CE.	Mol Microbiol	10.1111/j.1365-2958.2010.07513.x	2011
Genetics	Poles apart: Arctic and Antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin.	Vollmers J, Voget S, Dietrich S, Gollnow K, Smits M, Meyer K, Brinkhoff T, Simon M, Daniel R.	PLoS One	10.1371/journal.pone.0063422	2013
Genetics	Information theoretic perspective on genome clustering.	Veluchamy A, Mehta P, Srividhya KV, Vikram H, Govind MK, Gupta R, Aziz Bin Dukhyil A, Abdullah Alharbi R, Abdullah Aloyuni S, Hassan MM, Krishnaswamy S.	Saudi J Biol Sci	10.1016/j.sjbs.2020.12.039	2021
Enzymology	Crystal structure of the nitrogenase-like dark operative protochlorophyllide oxidoreductase catalytic complex (ChlN/ChlB)2.	Brocker MJ, Schomburg S, Heinz DW, Jahn D, Schubert WD, Moser J.	J Biol Chem	10.1074/jbc.m110.126698	2010
Metabolism	Genomes and virulence factors of novel bacterial pathogens causing bleaching disease in the marine red alga Delisea pulchra.	Fernandes N, Case RJ, Longford SR, Seyedsayamdost MR, Steinberg PD, Kjelleberg S, Thomas T.	PLoS One	10.1371/journal.pone.0027387	2011
Metabolism	Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. strain MED134.	Gonzalez JM, Pinhassi J, Fernandez-Gomez B, Coll-Llado M, Gonzalez-Velazquez M, Puigbo P, Jaenicke S, Gomez-Consarnau L, Fernandez-Guerra A, Goesmann A, Pedros-Alio C.	Appl Environ Microbiol	10.1128/aem.06152-11	2011
Metabolism	Distribution and functions of TonB-dependent transporters in marine bacteria and environments: implications for dissolved organic matter utilization.	Tang K, Jiao N, Liu K, Zhang Y, Li S.	PLoS One	10.1371/journal.pone.0041204	2012
	Distribution of genes encoding nucleoid-associated protein homologs in plasmids.	Takeda T, Yun CS, Shintani M, Yamane H, Nojiri H.	Int J Evol Biol	10.4061/2011/685015	2011
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
	Diversity and distribution of ecotypes of the aerobic anoxygenic phototrophy gene pufM in the Delaware estuary.	Waidner LA, Kirchman DL.	Appl Environ Microbiol	10.1128/aem.02324-07	2008
Phylogeny	Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans.	Fuhrman JA, McCallum K, Davis AA.	Appl Environ Microbiol	10.1128/aem.59.5.1294-1302.1993	1993
Metabolism	CarF mediates signaling by singlet oxygen, generated via photoexcited protoporphyrin IX, in Myxococcus xanthus light-induced carotenogenesis.	Galbis-Martinez M, Padmanabhan S, Murillo FJ, Elias-Arnanz M.	J Bacteriol	10.1128/jb.06662-11	2012
Metabolism	Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria.	Christie-Oleza JA, Pina-Villalonga JM, Bosch R, Nogales B, Armengaud J.	Mol Cell Proteomics	10.1074/mcp.m111.013110	2012
Metabolism	A comparative quantitative proteomic study identifies new proteins relevant for sulfur oxidation in the purple sulfur bacterium Allochromatium vinosum.	Weissgerber T, Sylvester M, Kroninger L, Dahl C.	Appl Environ Microbiol	10.1128/aem.04182-13	2014
Metabolism	Energy metabolism of Heliobacterium modesticaldum during phototrophic and chemotrophic growth.	Tang KH, Yue H, Blankenship RE.	BMC Microbiol	10.1186/1471-2180-10-150	2010
Phylogeny	Heterotrophic and autotrophic microbial populations in cold perennial springs of the high arctic.	Perreault NN, Greer CW, Andersen DT, Tille S, Lacrampe-Couloume G, Lollar BS, Whyte LG.	Appl Environ Microbiol	10.1128/aem.00359-08	2008
Metabolism	An atypical riboflavin pathway is essential for Brucella abortus virulence.	Bonomi HR, Marchesini MI, Klinke S, Ugalde JE, Zylberman V, Ugalde RA, Comerci DJ, Goldbaum FA.	PLoS One	10.1371/journal.pone.0009435	2010
Metabolism	An imperfect inverted repeat is critical for DNA binding of the response regulator RegR of Bradyrhizobium japonicum.	Emmerich R, Strehler P, Hennecke H, Fischer HM.	Nucleic Acids Res	10.1093/nar/28.21.4166	2000
Metabolism	Bacterial voltage-gated sodium channels (BacNa(V)s) from the soil, sea, and salt lakes enlighten molecular mechanisms of electrical signaling and pharmacology in the brain and heart.	Payandeh J, Minor DL.	J Mol Biol	10.1016/j.jmb.2014.08.010	2015
Metabolism	Enzymatic manganese(II) oxidation by a marine alpha-proteobacterium.	Francis CA, Co EM, Tebo BM.	Appl Environ Microbiol	10.1128/aem.67.9.4024-4029.2001	2001
	Activation of the global gene regulator PrrA (RegA) from Rhodobacter sphaeroides.	Laguri C, Stenzel RA, Donohue TJ, Phillips-Jones MK, Williamson MP.	Biochemistry	10.1021/bi060683g	2006
Metabolism	Carbon metabolic pathways in phototrophic bacteria and their broader evolutionary implications.	Tang KH, Tang YJ, Blankenship RE.	Front Microbiol	10.3389/fmicb.2011.00165	2011
Genetics	Ecological genomics of marine Roseobacters.	Moran MA, Belas R, Schell MA, Gonzalez JM, Sun F, Sun S, Binder BJ, Edmonds J, Ye W, Orcutt B, Howard EC, Meile C, Palefsky W, Goesmann A, Ren Q, Paulsen I, Ulrich LE, Thompson LS, Saunders E, Buchan A.	Appl Environ Microbiol	10.1128/aem.02580-06	2007
Metabolism	Transcriptome analysis of the Rhodobacter sphaeroides PpsR regulon: PpsR as a master regulator of photosystem development.	Moskvin OV, Gomelsky L, Gomelsky M.	J Bacteriol	10.1128/jb.187.6.2148-2156.2005	2005
Phylogeny	Dimethylsulfoniopropionate metabolism by Pfiesteria-associated Roseobacter spp.	Miller TR, Belas R.	Appl Environ Microbiol	10.1128/aem.70.6.3383-3391.2004	2004
Metabolism	Genome organization and localization of the pufLM genes of the photosynthesis reaction center in phylogenetically diverse marine Alphaproteobacteria.	Pradella S, Allgaier M, Hoch C, Pauker O, Stackebrandt E, Wagner-Dobler I.	Appl Environ Microbiol	10.1128/aem.70.6.3360-3369.2004	2004
Phylogeny	Bacteriophage prevalence in the genus Azospirillum and analysis of the first genome sequence of an Azospirillum brasilense integrative phage.	Boyer M, Haurat J, Samain S, Segurens B, Gavory F, Gonzalez V, Mavingui P, Rohr R, Bally R, Wisniewski-Dye F.	Appl Environ Microbiol	10.1128/aem.02099-07	2008
Metabolism	Interaction between the biotin carboxyl carrier domain and the biotin carboxylase domain in pyruvate carboxylase from Rhizobium etli.	Lietzan AD, Menefee AL, Zeczycki TN, Kumar S, Attwood PV, Wallace JC, Cleland WW, St Maurice M.	Biochemistry	10.1021/bi201277j	2011
Phylogeny	Phylogenomics and signature proteins for the alpha proteobacteria and its main groups.	Gupta RS, Mok A.	BMC Microbiol	10.1186/1471-2180-7-106	2007
Metabolism	Phylogenetic analysis of culturable dimethyl sulfide-producing bacteria from a spartina-dominated salt marsh and estuarine water.	Ansede JH, Friedman R, Yoch DC.	Appl Environ Microbiol	10.1128/aem.67.3.1210-1217.2001	2001
Metabolism	Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.	Vetting MW, Al-Obaidi N, Zhao S, San Francisco B, Kim J, Wichelecki DJ, Bouvier JT, Solbiati JO, Vu H, Zhang X, Rodionov DA, Love JD, Hillerich BS, Seidel RD, Quinn RJ, Osterman AL, Cronan JE, Jacobson MP, Gerlt JA, Almo SC.	Biochemistry	10.1021/bi501388y	2015
Phylogeny	Molecular and ecological evidence for species specificity and coevolution in a group of marine algal-bacterial symbioses.	Ashen JB, Goff LJ.	Appl Environ Microbiol	10.1128/aem.66.7.3024-3030.2000	2000
Metabolism	SoxAX binding protein, a novel component of the thiosulfate-oxidizing multienzyme system in the green sulfur bacterium Chlorobium tepidum.	Ogawa T, Furusawa T, Nomura R, Seo D, Hosoya-Matsuda N, Sakurai H, Inoue K.	J Bacteriol	10.1128/jb.00634-08	2008
Metabolism	3-methylcrotonyl-CoA carboxylase deficiency: clinical, biochemical, enzymatic and molecular studies in 88 individuals.	Grunert SC, Stucki M, Morscher RJ, Suormala T, Burer C, Burda P, Christensen E, Ficicioglu C, Herwig J, Kolker S, Moslinger D, Pasquini E, Santer R, Schwab KO, Wilcken B, Fowler B, Yue WW, Baumgartner MR.	Orphanet J Rare Dis	10.1186/1750-1172-7-31	2012
Metabolism	Comparison of methods for quantification of cytochrome cd(1)-denitrifying bacteria in environmental marine samples.	Michotey V, Mejean V, Bonin P.	Appl Environ Microbiol	10.1128/aem.66.4.1564-1571.2000	2000
	Seasonal changes in bacterial and archaeal gene expression patterns across salinity gradients in the Columbia River coastal margin.	Smith MW, Herfort L, Tyrol K, Suciu D, Campbell V, Crump BC, Peterson TD, Zuber P, Baptista AM, Simon HM.	PLoS One	10.1371/journal.pone.0013312	2010
Metabolism	Diversity of thiosulfate-oxidizing bacteria from marine sediments and hydrothermal vents.	Teske A, Brinkhoff T, Muyzer G, Moser DP, Rethmeier J, Jannasch HW.	Appl Environ Microbiol	10.1128/aem.66.8.3125-3133.2000	2000
Transcriptome	Complete genome sequence of the chemolithoautotrophic marine magnetotactic coccus strain MC-1.	Schubbe S, Williams TJ, Xie G, Kiss HE, Brettin TS, Martinez D, Ross CA, Schuler D, Cox BL, Nealson KH, Bazylinski DA.	Appl Environ Microbiol	10.1128/aem.02874-08	2009
Phylogeny	Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean.	Crump BC, Armbrust EV, Baross JA.	Appl Environ Microbiol	10.1128/aem.65.7.3192-3204.1999	1999
Metabolism	Role of Rhodobacter sp. strain PS9, a purple non-sulfur photosynthetic bacterium isolated from an anaerobic swine waste lagoon, in odor remediation.	Do YS, Schmidt TM, Zahn JA, Boyd ES, de la Mora A, DiSpirito AA.	Appl Environ Microbiol	10.1128/aem.69.3.1710-1720.2003	2003
Metabolism	Bacterial adaptation of respiration from oxic to microoxic and anoxic conditions: redox control.	Bueno E, Mesa S, Bedmar EJ, Richardson DJ, Delgado MJ.	Antioxid Redox Signal	10.1089/ars.2011.4051	2012
Metabolism	Transformation of sulfur compounds by an abundant lineage of marine bacteria in the alpha-subclass of the class Proteobacteria.	Gonzalez JM, Kiene RP, Moran MA.	Appl Environ Microbiol	10.1128/aem.65.9.3810-3819.1999	1999
Genetics	Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria.	Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M.	Front Microbiol	10.3389/fmicb.2020.00468	2020
Metabolism	Cell biology and molecular basis of denitrification.	Zumft WG.	Microbiol Mol Biol Rev	10.1128/mmbr.61.4.533-616.1997	1997
Pathogenicity	Metabolism of chiral sulfonate compound 2,3-dihydroxypropane-1-sulfonate (DHPS) by Roseobacter bacteria in marine environment.	Chen X, Liu L, Gao X, Dai X, Han Y, Chen Q, Tang K	Environ Int	10.1016/j.envint.2021.106829	2021
Genetics	Complete genome sequence of the siphovirus Roseophage RDJLPhi 2 infecting Roseobacter denitrificans OCh114.	Liang Y, Zhang Y, Zhou C, Chen Z, Yang S, Yan C, Jiao N	Mar Genomics	10.1016/j.margen.2015.10.009	2015
	"You produce while I clean up", a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions.	Christie-Oleza JA, Scanlan DJ, Armengaud J	Proteomics	10.1002/pmic.201400562	2015
Genetics	N-Terminal-oriented proteogenomics of the marine bacterium roseobacter denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography.	Bland C, Hartmann EM, Christie-Oleza JA, Fernandez B, Armengaud J	Mol Cell Proteomics	10.1074/mcp.O113.032854	2014
Enzymology	Identification of the genes encoding nitric oxide reductase in the aerobic photosynthetic bacterium Roseobacter denitrificans OCh114.	Kimura M, Ishii M, Igarashi Y, Arai H	Biosci Biotechnol Biochem	10.1271/bbb.120406	2012
Metabolism	Host responses of a marine bacterium, Roseobacter denitrificans OCh114, to phage infection.	Zhang Y, Zhang F, Yang J, Jiao N	Arch Microbiol	10.1007/s00203-011-0765-y	2011
Metabolism	Formation of polyhydroxyalkanoate in aerobic anoxygenic phototrophic bacteria and its relationship to carbon source and light availability.	Xiao N, Jiao N	Appl Environ Microbiol	10.1128/AEM.05955-11	2011
Genetics	Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis.	Kalhoefer D, Thole S, Voget S, Lehmann R, Liesegang H, Wollher A, Daniel R, Simon M, Brinkhoff T	BMC Genomics	10.1186/1471-2164-12-324	2011
Phylogeny	Complete genome sequence of a marine roseophage provides evidence into the evolution of gene transfer agents in alphaproteobacteria.	Huang S, Zhang Y, Chen F, Jiao N	Virol J	10.1186/1743-422X-8-124	2011
Enzymology	Phage resistance of a marine bacterium, Roseobacter denitrificans OCh114, as revealed by comparative proteomics.	Huang C, Zhang Y, Jiao N	Curr Microbiol	10.1007/s00284-010-9588-3	2010
Metabolism	Carbohydrate metabolism and carbon fixation in Roseobacter denitrificans OCh114.	Tang KH, Feng X, Tang YJ, Blankenship RE	PLoS One	10.1371/journal.pone.0007233	2009
Enzymology	Roseophage RDJL Phi1, infecting the aerobic anoxygenic phototrophic bacterium Roseobacter denitrificans OCh114.	Zhang Y, Jiao N	Appl Environ Microbiol	10.1128/AEM.02131-08	2009
Enzymology	Structure of the puf operon of the obligately aerobic, bacteriochlorophyll alpha-containing bacterium Roseobacter denitrificans OCh114 and its expression in a Rhodobacter capsulatus puf puc deletion mutant.	Kortluke C, Breese K, Gad'on N, Labahn A, Drews G	J Bacteriol	10.1128/jb.179.17.5247-5258.1997	1997
Phylogeny	Roseobacter fucihabitans sp. nov., isolated from the brown alga Fucus spiralis.	Hahnke S, Berger M, Schlingloff A, Athale I, Wolf J, Neumann-Schaal M, Adenaya A, Poehlein A, Daniel R, Petersen J, Brinkhoff T.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006403	2024
Phylogeny	Roseobacter ponti sp. nov., isolated from seawater.	Jung YT, Park S, Lee JS, Yoon JH.	Int J Syst Evol Microbiol	10.1099/ijsem.0.001922	2017
Phylogeny	Pelagimonas varians gen. nov., sp. nov., isolated from the southern North Sea.	Hahnke S, Tindall BJ, Schumann P, Simon M, Brinkhoff T.	Int J Syst Evol Microbiol	10.1099/ijs.0.040675-0	2013
Phylogeny	Dinoroseobacter shibae gen. nov., sp. nov., a new aerobic phototrophic bacterium isolated from dinoflagellates.	Biebl H, Allgaier M, Tindall BJ, Koblizek M, Lunsdorf H, Pukall R, Wagner-Dobler I.	Int J Syst Evol Microbiol	10.1099/ijs.0.63511-0	2005
Phylogeny	Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera.	Martens T, Heidorn T, Pukall R, Simon M, Tindall BJ, Brinkhoff T.	Int J Syst Evol Microbiol	10.1099/ijs.0.63724-0	2006
Phylogeny	Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima.	Lafay B, Ruimy R, de Traubenberg CR, Breittmayer V, Gauthier MJ, Christen R.	Int J Syst Bacteriol	10.1099/00207713-45-2-290	1995
Metabolism	Albidovulum inexpectatum gen. nov., sp. nov., a nonphotosynthetic and slightly thermophilic bacterium from a marine hot spring that is very closely related to members of the photosynthetic genus Rhodovulum.	Albuquerque L, Santos J, Travassos P, Nobre MF, Rainey FA, Wait R, Empadinhas N, Silva MT, da Costa MS.	Appl Environ Microbiol	10.1128/aem.68.9.4266-4273.2002	2002
	The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. nov., sp. nov.	Spring S, Lunsdorf H, Fuchs BM, Tindall BJ.	PLoS One	10.1371/journal.pone.0004866	2009
Phylogeny	Roseobacter cerasinus sp. nov., isolated from a fish farm.	Muramatsu S, Kanamuro M, Sato-Takabe Y, Hirose S, Muramatsu Y, Takaichi S, Hanada S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004360	2020

References

#2944	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7001
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41078	; Curators of the CIP;
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#118905	Collection of Institut Pasteur ; Curators of the CIP; CIP 104266
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Roseobacter denitrificans (DSM 7001, ATCC 33942, OCh 114)

Name and taxonomic classification

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Culture and growth conditions

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Physiology and metabolism

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Antibiotic resistance

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