Name: Rhodocista pekingensis 3-P
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 137571

Type strain:

Species: Rhodocista pekingensis

Strain Designation: 3-P

Culture col. no.: CIP 108102, JCM 11669, AS 1.2194, CGMCC 1.2194

Strain history: CIP <- 2003, JCM <- 2002, AS <- D. Zhang: strain 3-P

NCBI tax ID(s): 201185 (species)

SI-ID 111757

AS 1.2194, CIP 108102, CGMCC 1.2194

Section

Rhodocista pekingensis 3-P is a mesophilic, Gram-negative, motile bacterium of the family Azospirillaceae.

Gram-negative
motile
rod-shaped
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Azospirillaceae*
	Genus	*Rhodocista*
	Species	**Rhodocista pekingensis**
	Full Scientific Name (LPSN)	Rhodocista pekingensis Zhang et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #38256]	Gram stain	negative

[Ref.: #38256]	Cell shape	rod-shaped

[Ref.: #38256]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #38256]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #38256]

Culture medium growth

[Ref.: #38256]

Culture medium composition

expand / minimize

[Ref.: #38256]

Culture medium

CIP Medium 575

[Ref.: #38256]

Culture medium growth

[Ref.: #38256]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #38256]

Culture medium

CIP Medium 72

[Ref.: #38256]

Culture medium growth

[Ref.: #38256]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #38256]		growth	30 °C
[Ref.: #38256]		growth	30-41 °C
[Ref.: #38256]	no	growth	5 °C
[Ref.: #38256]	no	growth	15 °C
[Ref.: #38256]	no	growth	22 °C
[Ref.: #67770]		growth	30 °C

[Ref.: #38256]	Temperature range	mesophilic
[Ref.: #38256]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Salt	Tested relation		Salt conc.
[Ref.: #38256]	NaCl		growth	0	%
[Ref.: #38256]	NaCl	no	growth	2	%
[Ref.: #38256]	NaCl	no	growth	4	%
[Ref.: #38256]	NaCl	no	growth	6	%
[Ref.: #38256]	NaCl	no	growth	8	%
[Ref.: #38256]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: Q-9, Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #38256]	citrate ChEBI	-	carbon source
[Ref.: #38256]	esculin ChEBI	-	hydrolysis
[Ref.: #38256]	glucose ChEBI	-	degradation
[Ref.: #38256]	nitrate ChEBI	-	reduction
[Ref.: #38256]	nitrate ChEBI	+	respiration
[Ref.: #38256]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #38256]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #38256]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #38256]		acetoin ChEBI	-
[Ref.: #38256]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #38256]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #38256]	amylase	-
[Ref.: #38256]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #38256]	caseinase	-	3.4.21.50
[Ref.: #38256]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #38256]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #38256]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #38256]	gelatinase	-
[Ref.: #38256]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #38256]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #38256]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #38256]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #38256]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #38256]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #38256]	tryptophan deaminase	-
[Ref.: #38256]	tween esterase	-
[Ref.: #38256]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #38256]	10885	-	+	+	+	-	+	-	-	+	+	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Municipal wastewater treatment plant in Beijing
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #38256]	Sample type/isolated from	Environment, Activated sludge
[Ref.: #38256]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #38256]	Country	China
[Ref.: #38256]	Country ISO 3 Code	CHN
[Ref.: #38256]	Continent	Asia

[Ref.: #38256]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #38256]	Country	China
[Ref.: #38256]	Country ISO 3 Code	CHN
[Ref.: #38256]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AF523824 (>99% sequence identity) for Rhodospirillaceae from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples	1
Plant Samples
Total Samples	2

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #38256]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhodocista pekingensis 16S ribosomal RNA gene, partial sequence	AF523824	1373	ENA	201185 tax ID

[Ref.: #67770]

GC-content

68.8 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #38256]

Culture collection no.

CIP 108102, JCM 11669, AS 1.2194, CGMCC 1.2194

[Ref.: #94432]

SI-ID 111757

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Niveispirillum fermenti gen. nov., sp. nov., isolated from a fermentor in Taiwan, transfer of Azospirillum irakense (1989) as Niveispirillum irakense comb. nov., and reclassification of Azospirillum amazonense (1983) as Nitrospirillum amazonense gen. nov.	Lin SY, Hameed A, Shen FT, Liu YC, Hsu YH, Shahina M, Lai WA, Young CC	Antonie Van Leeuwenhoek	10.1007/s10482-014-0176-6	2014	*
Phylogeny	Rhodocista pekingensis sp. nov., a cyst-forming phototrophic bacterium from a municipal wastewater treatment plant.	Zhang D, Yang H, Zhang W, Huang Z, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.02500-0	2003	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#38256 Collection of Institut Pasteur ; Curators of the CIP; CIP 108102
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#94432

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID111757.1 )

* These data were automatically processed and therefore are not curated

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