Name: Marinomonas primoryensis CIP 108051
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 137570

Type strain:

Species: Marinomonas primoryensis

Culture col. no.: CIP 108051, JCM 11775, KMM 3633, NRIC 523, IAM 15010, NBRC 103029, NRIC 0523

Strain history: CIP <- 2003, JCM <- 2002, M. Uchino <- KMM

NCBI tax ID(s): 178399 (species)

SI-ID 88299

JCM11775, CIP 108051, IAM 15010, NBRC 103029

Other strains from Marinomonas primoryensis

M. primoryensis JCM 11776, IAM 15011, KMM 3634

Section

Marinomonas primoryensis CIP 108051 is a psychrophilic, Gram-negative, rod-shaped bacterium of the family Oceanospirillaceae.

Gram-negative
rod-shaped
psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Marinomonas*
	Species	**Marinomonas primoryensis**
	Full Scientific Name (LPSN)	Marinomonas primoryensis Romanenko et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #38253]	Gram stain	negative

[Ref.: #38253]	Cell shape	rod-shaped

[Ref.: #38253]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #38253]

Culture medium

Marine agar (MA)

[Ref.: #38253]

Culture medium growth

[Ref.: #38253]

Culture medium composition

expand / minimize

[Ref.: #38253]

Culture medium

CIP Medium 13

[Ref.: #38253]

Culture medium growth

[Ref.: #38253]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #38253]

Culture medium

CIP Medium 186

[Ref.: #38253]

Culture medium growth

[Ref.: #38253]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #38253]		growth	20 °C
[Ref.: #38253]		growth	5-30 °C
[Ref.: #38253]	no	growth	37 °C
[Ref.: #38253]	no	growth	41 °C
[Ref.: #67770]		growth	30 °C

[Ref.: #38253]	Temperature range	psychrophilic
[Ref.: #38253]	Temperature range	mesophilic
[Ref.: #38253]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Salt	Tested relation		Salt conc.
[Ref.: #38253]	NaCl		growth	0-6	%
[Ref.: #38253]	NaCl	no	growth	8	%
[Ref.: #38253]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #38253]	citrate ChEBI	-	carbon source
[Ref.: #38253]	esculin ChEBI	-	hydrolysis
[Ref.: #38253]	nitrate ChEBI	-	reduction
[Ref.: #38253]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #38253]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #38253]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #38253]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #38253]	amylase	-
[Ref.: #38253]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #38253]	caseinase	-	3.4.21.50
[Ref.: #38253]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #38253]	gelatinase	-
[Ref.: #38253]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #38253]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #38253]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #38253]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #38253]	oxidase	+
[Ref.: #38253]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #38253]	tryptophan deaminase	-
[Ref.: #38253]	tween esterase	-
[Ref.: #38253]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #38253]	2561	not determinedn.d.	-	+	-	+	-	-	-	+	-	-	+	-	+	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	+	+	-	+	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #38253]	10849	+	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Coastal sea-ice in Amursky Bay of the Sea of Japan
[Ref.: #67770]	Geographic location (country and/or sea, region)	near Vladivostok
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS

[Ref.: #38253]	Sample type/isolated from	Environment, Coastal sea-ice in the Sea of Japan
[Ref.: #38253]	Country	Japan
[Ref.: #38253]	Country ISO 3 Code	JPN
[Ref.: #38253]	Continent	Asia

[Ref.: #38253]	Country	Japan
[Ref.: #38253]	Country ISO 3 Code	JPN
[Ref.: #38253]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC507445 (>99% sequence identity) for Marinomonas primoryensis subclade from Microbeatlas

Aquatic Samples	1313
Soil Samples	61
Animal Samples	346
Plant Samples	12
Total Samples	1732

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #38253]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Marinomonas primoryensis JCM 11775 gene for 16S ribosomal RNA, partial sequence	LC507445	1463	ENA	178399 tax ID
[Ref.: #67770]	Marinomonas primoryensis gene for 16S ribosomal RNA, partial sequence, strain:KMM 3633	AB074193	1419	ENA	178399 tax ID

[Ref.: #67770]

GC-content

45.3-45.6 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #38253]

Culture collection no.

CIP 108051, JCM 11775, KMM 3633, NRIC 523, IAM 15010, NBRC 103029, NRIC 0523

[Ref.: #94431]

SI-ID 88299

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinomonas ushuaiensis sp. nov., isolated from coastal sea water in Ushuaia, Argentina, sub-Antarctica.	Prabagaran SR, Suresh K, Manorama R, Delille D, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.63363-0	2005	*
Phylogeny	Porin from Marine Bacterium Marinomonas primoryensis KMM 3633(T): Isolation, Physico-Chemical Properties, and Functional Activity.	Novikova OD, Khomenko VA, Kim NY, Likhatskaya GN, Romanenko LA, Aksenova EI, Kunda MS, Ryzhova NN, Portnyagina OY, Solov'eva TF, Voronina OL	Molecules	10.3390/molecules25143131	2020	*
Phylogeny	Marinomonas flavescens sp. nov., isolated from seawater adjacent to Fildes Peninsula, Antarctica.	Hu M, Zhai Y, Zhang Y, Han X, Fang W, Fang Z, Xiao Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003631	2019	*
Phylogeny	Marinomonas primoryensis sp. nov., a novel psychrophile isolated from coastal sea-ice in the Sea of Japan.	Romanenko LA, Uchino M, Mikhailov VV, Zhukova NV, Uchimura T	Int J Syst Evol Microbiol	10.1099/ijs.0.02280-0	2003	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#38253 Collection of Institut Pasteur ; Curators of the CIP; CIP 108051
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#94431

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID88299.1 )

* These data were automatically processed and therefore are not curated

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