Shewanella olleyana (CIP 107450, LMG 21437, ACAM 644)

Name: Shewanella olleyana (CIP 107450, LMG 21437, ACAM 644)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 137562

Type strain

Strain Designation ACEM9T

Culture col. no. CIP 107450 LMG 21437 ACAM 644 ACEM9T

NCBI tax ID(s) 135626

Special Collections CIP

Links

Shewanella olleyana ACEM9T is a mesophilic, Gram-negative, motile prokaryote of the family Shewanellaceae.

Gram-negative motile rod-shaped mesophilic genome sequence

Name and taxonomic classification

SI-ID 86438

LMG 21437,CIP 107450

@ref 20215

Last LPSN update 2025-12-16 10:02:51

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella olleyana

Full scientific name Shewanella olleyana Skerratt et al. 2002

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		99.3
125438	negative		99
38213	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
38213	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
38213	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
38213	positive	growth	30	mesophilic
38213	positive	growth	5-30
38213	negative	growth	37
38213	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.8

Spore formation

@ref	Spore formation	Confidence
125439		99.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
38213	NaCl	positive	growth	4-6 %
38213	NaCl		growth	0 %
38213	NaCl		growth	2 %
38213	NaCl		growth	8 %
38213	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
38213	16947 ChEBI	citrate	-	carbon source
38213	4853 ChEBI	esculin	-	hydrolysis
38213	17632 ChEBI	nitrate	+	reduction
38213	16301 ChEBI	nitrite	-	reduction
38213	132112 ChEBI	sodium thiosulfate	-	builds gas from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
38213	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
38213	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
38213	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
38213	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
38213	caseinase	+	3.4.21.50
38213	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
38213	gelatinase	+/-
38213	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
38213	lipase	-
68382	lipase (C 14)	-		from API zym
38213	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
38213	ornithine decarboxylase	-	4.1.1.17
38213	oxidase	+
38213	protease	+
68382	trypsin	-	3.4.21.4	from API zym
38213	tryptophan deaminase	-
38213	tween esterase	+
38213	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
38213	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
38213		Huon River estuary	Tasmania	AUS	Australia and Oceania
38213	Environment, Water	Huon river estuary, Tasmania	Australia	AUS	Australia and Oceania	1999

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
38213	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2328382v1 assembly for Shewanella olleyana LMG 21437	contig	GCA_023283825	135626.4	8046315659	135626	62.55

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Shewanella olleyana LMG 21437
NCBI: GCA_023283825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	79.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella olleyana LMG 21437
NCBI: GCA_023283825.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	87.67	no
125438	aerobic	aerobicⓘ	yes	52.40	no
125438	spore-forming	spore-formingⓘ	no	86.59	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	87.29	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Data on preparation of psychrotolerant bacterium Shewanella olleyana sp. nov. cells for transmission electron microscopy.	Feliciano CP, Rivera WL.	Data Brief	10.1016/j.dib.2016.09.049	2016
Phylogeny	Shewanella olleyana sp. nov., a marine species isolated from a temperate estuary which produces high levels of polyunsaturated fatty acids.	Skerratt JH, Bowman JP, Nichols PD	Int J Syst Evol Microbiol	10.1099/00207713-52-6-2101	2002

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#38213	Collection of Institut Pasteur ; Curators of the CIP; CIP 107450
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella olleyana (CIP 107450, LMG 21437, ACAM 644)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_023283825

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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