Name: Rhodovulum strictum DSM 11289
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13743

Type strain:

Species: Rhodovulum strictum

Culture col. no.: DSM 11289, ATCC 51905, JCM 9220, BCRC 80544, IAM 14750, IFO 16662, NBRC 16662

Strain history: A. Hiraishi MB-G2.

NCBI tax ID(s): 58314 (species)

SI-ID 49065

DSM 11289, ATCC 51905, JCM 9220, IFO 16662, NBRC 16662, IAM 14750

Other strains from Rhodovulum strictum

R. strictum DSM 11292, JCM 9221

Section

Rhodovulum strictum DSM 11289 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from tidal and seawater pools located at sewage sludge disposal sites.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Rhodovulum*
	Species	**Rhodovulum strictum**
	Full Scientific Name (LPSN)	Rhodovulum strictum Hiraishi and Ueda 1995

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4280]

Culture medium

RHODOVULUM STRICTUM MEDIUM (DSMZ Medium 746)

[Ref.: #4280]

Culture medium growth

[Ref.: #4280]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4280]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4280]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #4280]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4280]

Oxygen tolerance

anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.987

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4280]	Sample type/isolated from	tidal and seawater pools located at sewage sludge disposal sites
[Ref.: #4280]	Geographic location (country and/or sea, region)	Tokyo
[Ref.: #4280]	Country	Japan
[Ref.: #4280]	Country ISO 3 Code	JPN
[Ref.: #4280]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Colored bacterial blooms occurring in mud flat
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chiba
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Sewage sludge
#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D16419 (>99% sequence identity) for Rhodovulum from Microbeatlas

Aquatic Samples	37
Soil Samples	1
Animal Samples	2
Plant Samples
Total Samples	40

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4280]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4280]	Rhodovulum strictum gene for 16S rRNA	D16419	1387	ENA	58314 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhodovulum strictum DSM 11289	GCA_009649175	contig	GenBank	58314 tax ID
[Ref.: #66792]	Rhodovulum strictum strain DSM 11289	58314.4	wgs	PATRIC	58314 tax ID	*

[Ref.: #4280]

GC-content

67.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodovulum strictum strain DSM 11289 PATRIC: 58314.4
[Ref.: #69481]	spore-forming	no	64	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodovulum strictum strain DSM 11289 PATRIC: 58314.4
[Ref.: #69480]	gram-positive	no	98.93	no
[Ref.: #69480]	anaerobic	yes	51.592	no
[Ref.: #69480]	halophile	yes	52.006	no
[Ref.: #69480]	spore-forming	no	94.864	no
[Ref.: #69480]	glucose-util	yes	61.914	no
[Ref.: #69480]	thermophile	no	94.348	yes
[Ref.: #69480]	flagellated	no	81.177	no
[Ref.: #69480]	aerobic	no	87.399	no
[Ref.: #69480]	motile	yes	66.646	no
[Ref.: #69480]	glucose-ferment	no	86.768	no

Availability in culture collections External links

[Ref.: #4280]

Culture collection no.

DSM 11289, ATCC 51905, JCM 9220, BCRC 80544, IAM 14750, IFO 16662, NBRC 16662

[Ref.: #82925]

SI-ID 49065

Literature:

	Title	Authors	Journal	DOI	Year
	Nitrogen Fixation Activity and Genome Analysis of a Moderately Haloalkaliphilic Anoxygenic Phototrophic Bacterium Rhodovulum tesquicola.	Komova AV, Bakhmutova ED, Izotova AO, Kochetova ES, Toshchakov SV, Namsaraev ZB, Golichenkov MV, Korzhenkov AA	Microorganisms	10.3390/microorganisms10081615	2022	*

References

#4280

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11289

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82925

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49065.1 )

* These data were automatically processed and therefore are not curated

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Rhodovulum strictum strain DSM 11289

Rhodovulum strictum strain DSM 11289

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