Name: Chryseobacterium rhizosphaerae RSB3-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 137383

Type strain:

Species: Chryseobacterium rhizosphaerae

Strain Designation: RSB3-1

Culture col. no.: CIP 110403, KCTC 22548, NBRC 105248

Strain history: CIP <- 2012, KCTC <- S.B. Kim, Chungnam Natl. Univ., Korea: strain RSB3-1

NCBI tax ID(s): 395937 (species)

SI-ID 376084

KCTC 22548, NBRC 105248, CIP 110403

Section

Chryseobacterium rhizosphaerae RSB3-1 is an aerobe, mesophilic bacterium of the family Weeksellaceae.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium rhizosphaerae**
	Full Scientific Name (LPSN)	Chryseobacterium rhizosphaerae Cho et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #37602]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #37602]	Cell shape	rod-shaped

[Ref.: #37602]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.469

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37602]

Culture medium

MEDIUM 328- for nutrient agar

[Ref.: #37602]

Culture medium growth

[Ref.: #37602]

Culture medium composition

expand / minimize

[Ref.: #37602]

Culture medium

CIP Medium 328

[Ref.: #37602]

Culture medium growth

[Ref.: #37602]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #37602]			growth	30 °C
[Ref.: #67771]			growth	30-37 °C

[Ref.: #37602]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

[Ref.: #67771]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From rhizosphere of wild rye, `Elymus mollis` growing in a coastal sand dune area
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #37602]	Sample type/isolated from	Environment, Soil, rhizosphere of wild rye (Elymus mollis) growing in a coastal sand dune area
[Ref.: #37602]	Geographic location (country and/or sea, region)	The Tae-An area, Chungnam Province
[Ref.: #37602]	Country	Republic of Korea
[Ref.: #37602]	Country ISO 3 Code	KOR
[Ref.: #37602]	Continent	Asia

[Ref.: #37602]	Country	Republic of Korea
[Ref.: #37602]	Country ISO 3 Code	KOR
[Ref.: #37602]	Continent	Asia
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #37602]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Chryseobacterium rhizosphaerae strain RSB3-1 16S ribosomal RNA gene, partial sequence	DQ673670	1426	ENA	395937 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium rhizosphaerae NBRC 105248	GCA_007991415	contig	GenBank	395937 tax ID	*
[Ref.: #66792]	Chryseobacterium rhizosphaerae KCTC 22548	GCA_003385455	contig	GenBank	395937 tax ID	*
[Ref.: #66792]	Chryseobacterium rhizosphaerae strain KCTC 22548	395937.8	wgs	PATRIC	395937 tax ID	*
[Ref.: #66792]	Chryseobacterium rhizosphaerae strain NBRC 105248	395937.9	wgs	PATRIC	395937 tax ID	*

[Ref.: #67771]

GC-content

35.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium rhizosphaerae strain NBRC 105248 PATRIC: 395937.9
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium rhizosphaerae strain KCTC 22548 PATRIC: 395937.8
[Ref.: #69480]	gram-positive	no	97.297	yes
[Ref.: #69480]	anaerobic	no	99.617	yes
[Ref.: #69480]	halophile	no	93.8	no
[Ref.: #69480]	spore-forming	no	92.35	yes
[Ref.: #69480]	glucose-util	yes	85.665	no
[Ref.: #69480]	aerobic	yes	93.791	yes
[Ref.: #69480]	flagellated	no	95.69	yes
[Ref.: #69480]	thermophile	no	99.747	yes
[Ref.: #69480]	motile	no	91.974	yes
[Ref.: #69480]	glucose-ferment	no	93.214	no

Availability in culture collections External links

[Ref.: #37602]

Culture collection no.

CIP 110403, KCTC 22548, NBRC 105248

[Ref.: #94295]

SI-ID 376084

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium vaccae sp. nov., isolated from raw cow's milk.	Lee JE, Yoon SH, Lee GY, Lee DH, Huh CS, Kim GB	Int J Syst Evol Microbiol	10.1099/ijsem.0.004250	2020	*
Genetics	Draft Genome Sequences of Seven Chryseobacterium Type Strains.	Matu A, Lum Nde A, Oosthuizen L, Hitzeroth A, Badenhorst M, Duba L, Gidaga M, Klinck J, Kriek IM, Lekoma PJ, Nel L, Dos Ramos SM, Rossouw J, Salomane N, Segone N, Serobe S, Tiyani T, Hugo CJ, Newman JD	Microbiol Resour Announc	10.1128/MRA.01518-18	2019	*
Phylogeny	Four new species of Chryseobacterium from the rhizosphere of coastal sand dune plants, Chryseobacterium elymi sp. nov., Chryseobacterium hagamense sp. nov., Chryseobacterium lathyri sp. nov. and Chryseobacterium rhizosphaerae sp. nov.	Cho SH, Lee KS, Shin DS, Han JH, Park KS, Lee CH, Park KH, Kim SB	Syst Appl Microbiol	10.1016/j.syapm.2009.12.004	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37602 Collection of Institut Pasteur ; Curators of the CIP; CIP 110403

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#94295

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID376084.1 )

* These data were automatically processed and therefore are not curated

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Chryseobacterium rhizosphaerae strain NBRC 105248

Chryseobacterium rhizosphaerae strain KCTC 22548

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