Zhouia amylolytica (CIP 109486, JCM 14016, CGMCC 1.6114)

Name: Zhouia amylolytica (CIP 109486, JCM 14016, CGMCC 1.6114)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 137379

Type strain

Strain Designation HN-171

Culture col. no. CIP 109486 JCM 14016 CGMCC 1.6114 HN-171

NCBI tax ID(s) 376730

Special Collections JCM CIP

History S. Liu HN-171. CIP <- 2007, JCM <- 2006, S. Liu, Chinese Academy Sciences, Beijing, China: strain HN-171

Links

Zhouia amylolytica HN-171 is a Gram-negative, motile, rod-shaped bacterium of the family Flavobacteriaceae.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297348

CGMCC 1.6114,JCM 14016,CIP 109486

@ref 20215

Last LPSN update 2026-02-09 11:32:52

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Zhouia

Species Zhouia amylolytica

Full scientific name Zhouia amylolytica Liu et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438			93.5
125438	negative		99.413
125439	negative		98.3
37569	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
37569	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
37569	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
37569	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.5
125439		95.6

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
37569	17632 ChEBI	nitrate	-	reduction
37569	16301 ChEBI	nitrite	+	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
37569	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
37569	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
37569	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
37569	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
37569	-	+	+	+	-	+	+	+	+	-	+	+	+	+	-	+	+	+	+	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
37569		South China sea	China	CHN	Asia
67770	Sediment from the South China Sea		China	CHN	Asia
37569	Environment, Sea, sediment	China Sea	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ423479 (>99% sequence identity) for Zhouia amylolytica subclade from Microbeatlas

Aquatic Samples	1797
Soil Samples	172
Animal Samples	392
Plant Samples	22
Total Samples	2383

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
37569	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2619618939 annotated assembly for Zhouia amylolytica CGMCC 1.6114	scaffold	GCA_900116365	376730.5	2619618939	376730	74.99

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Zhouia amylolytica strain HN-171 16S ribosomal RNA gene, partial sequence	DQ423479	1478		376730

GC content

@ref	GC-content (mol%)	Method
67770	34.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Zhouia amylolytica CGMCC 1.6114
NCBI: GCA_900116365

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.60	no
125439	motility	BacteriaNetⓘ	no	68.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	82.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Zhouia amylolytica strain CGMCC 1.6114
PATRIC: 376730.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.41	no
125438	anaerobic	anaerobicⓘ	no	97.68	no
125438	spore-forming	spore-formingⓘ	no	90.50	no
125438	aerobic	aerobicⓘ	yes	86.35	no
125438	thermophilic	thermophileⓘ	no	98.88	yes
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft Genome Sequence of Zhouia amylolytica CL16, Isolated from Mangrove Soil.	Hong CWL, Liew KJ, Lam MQ, Chong CS.	Microbiol Resour Announc	10.1128/mra.00068-23	2023
Phylogeny	Zhouia amylolytica gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from sediment of the South China Sea.	Liu ZP, Wang BJ, Dai X, Liu XY, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64587-0	2006

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#37569	Collection of Institut Pasteur ; Curators of the CIP; CIP 109486
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Zhouia amylolytica (CIP 109486, JCM 14016, CGMCC 1.6114)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900116365

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media