Name: Rubrivivax benzoatilyticus JA2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 137373

Type strain:

Species: Rubrivivax benzoatilyticus

Strain Designation: JA2

Culture col. no.: CIP 109386, JCM 13220, ATCC BAA-35, MTCC 7087

Strain history: CIP <- 2006, JCM <- C.V. Ramana, Hyderabad Univ., Hyderabad, India: strain JA2

NCBI tax ID(s): 316997 (species)

SI-ID 297315

ATCC BAA-35, JCM 13220, CIP 109386

Section

Rubrivivax benzoatilyticus JA2 is a mesophilic, Gram-negative, motile bacterium of the family Comamonadaceae.

Gram-negative
motile
rod-shaped
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Rubrivivax*
	Species	**Rubrivivax benzoatilyticus**
	Full Scientific Name (LPSN)	Rubrivivax benzoatilyticus Ramana et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #37538]	Gram stain	negative

[Ref.: #37538]	Cell shape	rod-shaped

[Ref.: #37538]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37538]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37538]

Culture medium growth

[Ref.: #37538]

Culture medium composition

expand / minimize

[Ref.: #37538]

Culture medium

CIP Medium 575

[Ref.: #37538]

Culture medium growth

[Ref.: #37538]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #37538]

Culture medium

CIP Medium 72

[Ref.: #37538]

Culture medium growth

[Ref.: #37538]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #37538]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #37538]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #37538]		nitrate ChEBI	-	reduction
[Ref.: #37538]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #37538]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #37538]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #37538]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #37538]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #37538]	11831	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Rhizosphere of a flooded paddy field near Eluru
[Ref.: #67770]	Geographic location (country and/or sea, region)	Andhra Pradesh
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia

[Ref.: #37538]	Sample type/isolated from	Environment, Flooded paddy soil
[Ref.: #37538]	Geographic location (country and/or sea, region)	Andhra Pradesh
[Ref.: #37538]	Country	India
[Ref.: #37538]	Country ISO 3 Code	IND
[Ref.: #37538]	Continent	Asia

[Ref.: #37538]	Geographic location (country and/or sea, region)	Andhra Pradesh
[Ref.: #37538]	Country	India
[Ref.: #37538]	Country ISO 3 Code	IND
[Ref.: #37538]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AJ888903 (>99% sequence identity) for Rubrivivax from Microbeatlas

Aquatic Samples	17
Soil Samples	4
Animal Samples	15
Plant Samples	1
Total Samples	37

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #37538]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rubrivivax benzoatilyticus 16S rRNA gene, type strain JA2T	AJ888903	1492	ENA	987059 tax ID

[Ref.: #67770]

GC-content

74.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #37538]

Culture collection no.

CIP 109386, JCM 13220, ATCC BAA-35, MTCC 7087

[Ref.: #94290]

SI-ID 297315

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rubrivivax benzoatilyticus sp. nov., an aromatic, hydrocarbon-degrading purple betaproteobacterium.	Ramana CV, Sasikala C, Arunasri K, Anil Kumar P, Srinivas TNR, Shivaji S, Gupta P, Suling J, Imhoff JF	Int J Syst Evol Microbiol	10.1099/ijs.0.64209-0	2006	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37538 Collection of Institut Pasteur ; Curators of the CIP; CIP 109386
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#94290

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297315.1 )

* These data were automatically processed and therefore are not curated

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