Pseudorhodobacter ferrugineus A7 | Type strain | DSM 5888, ATCC 25652, IAM 12616, ICPB 4164, JCM 20687, CIP 105952, IFO 15767, LMG 127, LMG 22047, LMG 8173, NBRC 15767, NCIMB 1537 | BacDiveID:13735

Strain identifier

BacDive ID: 13735

Type strain:

Species: Pseudorhodobacter ferrugineus

Strain Designation: A7

Culture col. no.: DSM 5888, ATCC 25652, IAM 12616, ICPB 4164, JCM 20687, CIP 105952, IFO 15767, LMG 127, LMG 22047, LMG 8173, NBRC 15767, NCIMB 1537

Strain history: IAM 12616 <-- ATCC 25652 <-- R. Ahrens A7.

NCBI tax ID(s): 1123027 (strain), 77008 (species)

Section

Pseudorhodobacter ferrugineus A7 is a mesophilic bacterium that was isolated from brackish water.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	Rhodobacteraceae
	Genus	*Pseudorhodobacter*
	Species	**Pseudorhodobacter ferrugineus**
	Full Scientific Name (PNU)	Pseudorhodobacter ferrugineus (Rüger and Höfle 1992) Uchino et al. 2003

Synonym

Agrobacterium ferrugineum

Information on morphological and physiological properties Morphology

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

MARINE AGAR (DSMZ Medium 123)

Culture medium growth

Culture medium link

Medium recipe provided by DSMZ

Culture medium composition

expand / minimize

Culture medium

Marine agar (MA)

Culture medium growth

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2346]			growth	26 °C
[Ref.: #40273]			growth	25 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #2346]	Temperature range	mesophilic
[Ref.: #40273]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2346]	Sample type/isolated from	brackish water
[Ref.: #2346]	Geographic location (country and/or sea, region)	Baltic Sea

[Ref.: #67770]	Sample type/isolated from	Brackish water
[Ref.: #67770]	Geographic location (country and/or sea, region)	Baltic Sea
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Brackish

What are isolation sources categories?

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Global distribution of 16S sequence AB680963 (>99% sequence identity) for Pseudorhodobacter ferrugineus subclade from Microbeatlas

Aquatic Samples	1245
Soil Samples	22
Animal Samples	65
Plant Samples	3
Total Samples	1335

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Agrobacterium ferrugineum gene for 16S rRNA, partial sequence	D88522	1400	ENA	77008 tax ID	*
[Ref.: #20218]	Pseudorhodobacter ferrugineus gene for 16S rRNA, partial sequence, strain: NBRC 15767	AB680963	1405	ENA	77008 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudorhodobacter ferrugineus DSM 5888	1123027.3	wgs	PATRIC	1123027 tax ID	*
[Ref.: #66792]	Pseudorhodobacter ferrugineus strain LMG 22047	77008.4	wgs	PATRIC	77008 tax ID	*
[Ref.: #66792]	Pseudorhodobacter ferrugineus LMG 22047	2772190752	draft	JGI IMG/M	77008 tax ID	*
[Ref.: #66792]	Pseudorhodobacter ferrugineus DSM 5888	2524023154	draft	JGI IMG/M	1123027 tax ID	*
[Ref.: #67770]	Pseudorhodobacter ferrugineus DSM 5888 DSM 5888	GCA_000420745	contig	GenBank	1123027 tax ID
[Ref.: #67770]	Pseudorhodobacter ferrugineus LMG 22047	GCA_001202045	contig	GenBank	77008 tax ID

[Ref.: #67770]	GC-content	58 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	58 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

Culture collection no.

DSM 5888, ATCC 25652, IAM 12616, ICPB 4164, JCM 20687, CIP 105952, IFO 15767, LMG 127, LMG 22047, LMG 8173, NBRC 15767, NCIMB 1537

Associated Passport(s) in StrainInfo

148478, 51673, 51674, 51675

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev.	Ruger HJ, Hofle MG	Int J Syst Bacteriol	10.1099/00207713-42-1-133	1992	*
Phylogeny	Evolutionary relationship of phototrophic bacteria in the alpha-Proteobacteria based on farnesyl diphosphate synthase.	Cantera JJL, Kawasaki H, Seki T	Microbiology (Reading)	10.1099/00221287-148-6-1923	2002	*
Phylogeny	Reclassification of marine Agrobacterium species: Proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev.	Uchino Y, Hirata A, Yokota A, Sugiyama J	J Gen Appl Microbiol	10.2323/jgam.44.201	1998	*
Phylogeny	Proposal of Pseudorhodobacter ferrugineus gen nov, comb nov, for a non-photosynthetic marine bacterium, Agrobacterium ferrugineum, related to the genus Rhodobacter.	Uchino Y, Hamada T, Yokota A	J Gen Appl Microbiol	10.2323/jgam.48.309	2002	*
Phylogeny	Reclassification of Agrobacterium ferrugineum LMG 128 as Hoeflea marina gen. nov., sp. nov.	Peix A, Rivas R, Trujillo ME, Vancanneyt M, Velazquez E, Willems A	Int J Syst Evol Microbiol	10.1099/ijs.0.63291-0	2005	*
Phylogeny	Pseudorhodobacter aquimaris sp. nov., isolated from seawater, and emended description of the genus Pseudorhodobacter Uchino et al. 2002.	Jung YT, Oh KH, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.029769-0	2011	*
Phylogeny	Pseudorhodobacter antarcticus sp. nov., isolated from Antarctic intertidal sandy sediment, and emended description of the genus Pseudorhodobacter Uchino et al. 2002 emend. Jung et al. 2012.	Chen CX, Zhang XY, Liu C, Yu Y, Liu A, Li GW, Li H, Chen XL, Chen B, Zhou BC, Zhang YZ	Int J Syst Evol Microbiol	10.1099/ijs.0.042184-0	2012	*
Phylogeny	Pseudorhodobacter wandonensis sp. nov., isolated from wood falls, and emended description of the genus Pseudorhodobacter.	Lee MH, Lee SY, Jung YT, Park S, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.042879-0	2012	*
Phylogeny	Pseudorhodobacter collinsensis sp. nov., isolated from a till sample of an icecap front.	Zhang Y, Jiang F, Chang X, Qiu X, Ren L, Qu Z, Deng S, Da X, Kan W, Kim M, Fang C, Peng F	Int J Syst Evol Microbiol	10.1099/ijsem.0.000693	2015	*
Phylogeny	Pseudorhodobacter sinensis sp. nov. and Pseudorhodobacter aquaticus sp. nov., isolated from crater lakes.	Li AH, Liu HC, Hou WG, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001061	2016	*

References

#2346

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5888

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40273 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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