Name: Paracoccus bengalensis JJJ
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13726

Type strain:

Species: Paracoccus bengalensis

Strain Designation: JJJ

Culture col. no.: DSM 17099, LMG 22700, MTCC 7003

Strain history: <- P. Roy, Dept. Microbiol., Bose Inst., India; JJJ <- W. Ghosh et al.

NCBI tax ID(s): 34007 (species)

SI-ID 132531

LMG 22700, DSM 17099

Section

Paracoccus bengalensis JJJ is a mesophilic, Gram-negative bacterium that was isolated from soil adjacent to the roots of the plant Clitoria ternatea, a native legume of the lower-Gangetic plains of India .

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Paracoccus*
	Species	**Paracoccus bengalensis**
	Full Scientific Name (LPSN)	Paracoccus bengalensis Ghosh et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.993

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6759]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #6759]

Culture medium growth

[Ref.: #6759]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6759]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6759]			growth	28 °C

[Ref.: #6759]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.976

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6759]	Sample type/isolated from	soil adjacent to the roots of the plant Clitoria ternatea, a native legume of the lower-Gangetic plains of India (a slender under shrub or herb)
[Ref.: #6759]	Host species	Clitoria ternatea
[Ref.: #6759]	Geographic location (country and/or sea, region)	West Bengal, Dist. Kolkata
[Ref.: #6759]	Country	India
[Ref.: #6759]	Country ISO 3 Code	IND
[Ref.: #6759]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ864469 (>99% sequence identity) for Paracoccus from Microbeatlas

Aquatic Samples	2441
Soil Samples	932
Animal Samples	1611
Plant Samples	205
Total Samples	5189

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6759]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6759]	Paracoccus bengalensis 16S rRNA gene, type strain JJJT	AJ864469	1362	ENA	302403 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paracoccus versutus DSM 17099	GCA_003386575	contig	GenBank	34007 tax ID	*
[Ref.: #66792]	Paracoccus bengalensis strain DSM 17099	302403.6	wgs	PATRIC	34007 tax ID	*
[Ref.: #66792]	Paracoccus bengalensis DSM 17099	2773857629	draft	JGI IMG/M	302403 tax ID	*

[Ref.: #6759]

GC-content

65.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paracoccus bengalensis strain DSM 17099 PATRIC: 302403.6
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paracoccus bengalensis strain DSM 17099 PATRIC: 302403.6
[Ref.: #69480]	gram-positive	no	98.563	no
[Ref.: #69480]	anaerobic	no	96.213	no
[Ref.: #69480]	halophile	no	83.471	no
[Ref.: #69480]	spore-forming	no	96.95	no
[Ref.: #69480]	glucose-util	yes	86.052	no
[Ref.: #69480]	motile	no	61.997	no
[Ref.: #69480]	flagellated	no	87.621	no
[Ref.: #69480]	aerobic	yes	82.451	no
[Ref.: #69480]	thermophile	no	97.435	yes
[Ref.: #69480]	glucose-ferment	no	87.44	no

Availability in culture collections External links

[Ref.: #6759]

Culture collection no.

DSM 17099, LMG 22700, MTCC 7003

[Ref.: #82909]

SI-ID 132531

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paracoccus bengalensis sp. nov., a novel sulfur-oxidizing chemolithoautotroph from the rhizospheric soil of an Indian tropical leguminous plant.	Ghosh W, Mandal S, Roy P	Syst Appl Microbiol	10.1016/j.syapm.2005.10.004	2005	*

References

#6759

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17099

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82909

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID132531.1 )

* These data were automatically processed and therefore are not curated

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Paracoccus bengalensis strain DSM 17099

Paracoccus bengalensis strain DSM 17099

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