Oceanospirillum multiglobuliferum (CIP 103383, ATCC 33336, IFO 13614)

Name: Oceanospirillum multiglobuliferum (CIP 103383, ATCC 33336, IFO 13614)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 137244

Type strain

Strain Designation OF1

Culture col. no. CIP 103383 ATCC 33336 IFO 13614 LMG 5306 NCIMB 2227 1 more

NCBI tax ID(s) 64969

Special Collections CIP

History CIP <- 1990, IFO <- 1960, Y. Terasaki: strain OF1

Links

Oceanospirillum multiglobuliferum OF1 is a bacterium of the family Oceanospirillaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 3666

LMG 5306,ATCC 33336,IFO 13614,CIP 103383,NCMB 2227,NCIMB 2227,NBRC 13614

@ref 20215

Last LPSN update 2026-05-29 08:38:59

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Oceanospirillaceae

Genus Oceanospirillum

Species Oceanospirillum multiglobuliferum

Full scientific name Oceanospirillum multiglobuliferum (Terasaki 1973) Terasaki 1979 (Approved Lists 1980)

Synonyms (1)

"Spirillum multiglobuliferum"

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.628
125438	negative	100

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
37143	MEDIUM 61 - for Oceanospirillum multiglobuliferum		Manganese II sulphate monohydrate (2.000 mg);Magnesium sulphate heptahydrate (1.000 g);Agar (1.500 g);Ammonium sulphate (1.000 g);Peptone (10.000 g);Succinic acid (1.680 g);Ferric III chloride hexahydrate (2.000 mg);Synthetic sea solution - M0216 (1000.00
37143	CIP Medium 60			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
37143	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.748

Spore formation

@ref	Spore formation	Confidence
125439		99.619

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	gluconeogenesis	100	8 of 8
66794	ppGpp biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	valine metabolism	100	9 of 9
66794	ubiquinone biosynthesis	100	7 of 7
66794	palmitate biosynthesis	100	22 of 22
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	threonine metabolism	90	9 of 10
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	NAD metabolism	83.33	15 of 18
66794	proline metabolism	81.82	9 of 11
66794	vitamin B6 metabolism	81.82	9 of 11
66794	glycine betaine biosynthesis	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	gallate degradation	80	4 of 5
66794	4-hydroxyphenylacetate degradation	80	8 of 10
66794	flavin biosynthesis	80	12 of 15
66794	serine metabolism	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	CMP-KDO biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	methionine metabolism	73.08	19 of 26
66794	alanine metabolism	72.41	21 of 29
66794	cysteine metabolism	72.22	13 of 18
66794	phenylalanine metabolism	69.23	9 of 13
66794	lipid metabolism	67.74	21 of 31
66794	cyanate degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	methane metabolism	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	glycolysis	64.71	11 of 17
66794	citric acid cycle	64.29	9 of 14
66794	glutathione metabolism	64.29	9 of 14
66794	heme metabolism	64.29	9 of 14
66794	purine metabolism	62.77	59 of 94
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	urea cycle	61.54	8 of 13
66794	sulfate reduction	61.54	8 of 13
66794	tryptophan metabolism	60.53	23 of 38
66794	non-pathway related	60.53	23 of 38
66794	phenol degradation	60	12 of 20
66794	propionate fermentation	60	6 of 10
66794	glycogen metabolism	60	3 of 5
66794	propanol degradation	57.14	4 of 7
66794	lysine metabolism	57.14	24 of 42
66794	pyrimidine metabolism	55.56	25 of 45
66794	nitrate assimilation	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	arginine metabolism	54.17	13 of 24
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	glycine metabolism	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	denitrification	50	1 of 2
66794	glycogen biosynthesis	50	2 of 4
66794	sulfopterin metabolism	50	2 of 4
66794	cyclohexanol degradation	50	2 of 4
66794	isoprenoid biosynthesis	50	13 of 26
66794	androgen and estrogen metabolism	50	8 of 16
66794	oxidative phosphorylation	47.25	43 of 91
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	pentose phosphate pathway	45.45	5 of 11
66794	tyrosine metabolism	42.86	6 of 14
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	ascorbate metabolism	40.91	9 of 22
66794	coenzyme M biosynthesis	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	degradation of pentoses	32.14	9 of 28
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	vitamin B12 metabolism	29.41	10 of 34
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	polyamine pathway	26.09	6 of 23
66794	toluene degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	degradation of sugar alcohols	25	4 of 16
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	arachidonic acid metabolism	22.22	4 of 18
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
37143		Hiroshima	Japan	JPN	Asia
37143	Other, Marine shellfish	Hiroshima	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
37143	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2582581321 annotated assembly for Oceanospirillum multiglobuliferum ATCC 33336	scaffold	GCA_900167095	64969.3	2582581321	64969	61.52
66792	ASM205918v1 assembly for Oceanospirillum multiglobuliferum ATCC 33336	contig	GCA_002059185	64969.4	2833478085	64969	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Oceanospirillum multiglobuliferum gene for 16S rRNA, partial sequence, strain: IFO 13614.	AB006764	1458		64969

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2582581321 annotated assembly for Oceanospirillum multiglobuliferum ATCC 33336
BV-BRC: 64969.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.75	no
125439	motility	BacteriaNetⓘ	yes	74.16	no
125439	gram_stain	BacteriaNetⓘ	negative	97.63	no
125439	spore_formation	BacteriaNetⓘ	no	99.62	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Oceanospirillum multiglobuliferum ATCC 33336
NCBI: GCA_900167095.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	95.47	no
125438	aerobic	aerobicⓘ	yes	76.63	no
125438	spore-forming	spore-formingⓘ	no	89.06	no
125438	thermophilic	thermophileⓘ	no	96.11	yes
125438	flagellated	motile2+ⓘ	yes	83.57	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities.	Kent AD, Smith DJ, Benson BJ, Triplett EW.	Appl Environ Microbiol	10.1128/aem.69.11.6768-6776.2003	2003
Phylogeny	Phylogenetic analysis of the bacterial communities in marine sediments.	Gray JP, Herwig RP.	Appl Environ Microbiol	10.1128/aem.62.11.4049-4059.1996	1996
Genetics	Genome Sequence of a Marine Spirillum, Oceanospirillum multiglobuliferum ATCC 33336(T), Isolated from Japan.	Carney JG, Trachtenberg AM, Rheaume BA, Linnane JD, Pitts NL, Mykles DL, MacLea KS	Genome Announc	10.1128/genomeA.00396-17	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#37143	Collection of Institut Pasteur ; Curators of the CIP; CIP 103383
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Oceanospirillum multiglobuliferum (CIP 103383, ATCC 33336, IFO 13614)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900167095

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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