Name: Brevibacillus agri CIP 103839
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 137166

Type strain:

Species: Brevibacillus agri

Culture col. no.: CIP 103839, ATCC 51360, JCM 8507, DSM 8372, IFO 15519, LMG 16099, NBRC 15519, NCIMB 13347, NRRL NRS-616, NRRL: NRS-616

Strain history: CIP <- 1993, H. Takagi, Res. Lab. Higeta Shoyu Co, Japan: strain NRRL: NRS-616 <- N.R. Smith, Bacillus brevis <- J.R. Porter <- G. Bredmann

NCBI tax ID(s): 51101 (species)

SI-ID 10042

LMG 16099, ATCC 51360, CIP 103839, DSM 8372, IFO 15519, JCM 8507, NCIMB 13347, NRRL NRS-616, NBRC 15519, IFO 8507, ATCC 9914, NCTC 1134, NBRC 8507, BCRC 15921, CCRC 15921, CFBP 4247

Other strains from Brevibacillus agri

B. agri 13, NRS-1219, DSM 6348, ATCC 51663, ... (type strain)
B. agri Schotte, DSM 6366, NRS 1028
B. agri Collabena, DSM 6454, NRS 1027
B. agri DSM 8372, NRRL NRS-616
B. agri CCUG 31344, NRRL B-1157
B. agri
B. agri CCUG 36564, DSM 96-819
B. agri CCUG 44371

Section

Brevibacillus agri CIP 103839 is an obligate aerobe, spore-forming, mesophilic bacterium of the family Paenibacillaceae.

Gram-positive
motile
rod-shaped
spore-forming
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Brevibacillus*
	Species	**Brevibacillus agri**
	Full Scientific Name (LPSN)	Brevibacillus agri (Nakamura 1993 ex Laubach and Rice 1916) Shida et al. 1996

	Synonym	Bacillus galactophilus
	Synonym	Bacillus agri

Information on morphological and physiological properties Morphology

[Ref.: #37033]	Gram stain	positive

[Ref.: #37033]	Cell shape	rod-shaped

[Ref.: #37033]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37033]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #37033]

Culture medium growth

[Ref.: #37033]

Culture medium composition

expand / minimize

[Ref.: #37033]

Culture medium

CIP Medium 3

[Ref.: #37033]

Culture medium growth

[Ref.: #37033]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #37033]		growth	30 °C
[Ref.: #37033]		growth	37-45 °C
[Ref.: #37033]	no	growth	10 °C
[Ref.: #67770]		growth	30 °C

[Ref.: #37033]	Temperature range	mesophilic
[Ref.: #37033]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #37033]			growth	6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #37033]

Oxygen tolerance

obligate aerobe

[Ref.: #37033]

Ability of spore formation

yes

	Salt	Tested relation		Salt conc.
[Ref.: #37033]	NaCl		growth	0-2	%
[Ref.: #37033]	NaCl	no	growth	4	%
[Ref.: #37033]	NaCl	no	growth	6	%
[Ref.: #37033]	NaCl	no	growth	8	%
[Ref.: #37033]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #37033]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #37033]	nitrate ChEBI	+	reduction
[Ref.: #37033]	nitrate ChEBI	-	respiration
[Ref.: #37033]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #37033]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #37033]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #37033]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #37033]	amylase	+
[Ref.: #37033]	caseinase	-	3.4.21.50
[Ref.: #37033]	catalase	+	1.11.1.6
[Ref.: #37033]	gelatinase	+
[Ref.: #37033]	lecithinase	+
[Ref.: #37033]	lysine decarboxylase	-	4.1.1.18
[Ref.: #37033]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #37033]	oxidase	+
[Ref.: #37033]	urease	-	3.5.1.5

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #37033]	9420	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence LC379070 (>99% sequence identity) for Brevibacillus from Microbeatlas

Aquatic Samples	1150
Soil Samples	3695
Animal Samples	2257
Plant Samples	645
Total Samples	7747

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #37033]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Brevibacillus agri gene for 16S rRNA, partial sequence, strain: JCM 8507	LC379070	1459	ENA	51101 tax ID

[Ref.: #67770]

GC-content

52.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #37033]

Culture collection no.

CIP 103839, ATCC 51360, JCM 8507, DSM 8372, IFO 15519, LMG 16099, NBRC 15519, NCIMB 13347, NRRL NRS-616, NRRL: NRS-616

[Ref.: #94122]

SI-ID 10042

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37033 Collection of Institut Pasteur ; Curators of the CIP; CIP 103839
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#94122

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID10042.1 )

* These data were automatically processed and therefore are not curated

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