Strain identifier

BacDive ID: 137139

Type strain: No

Species: Clostridioides difficile

Culture col. no.: CIP 109240, ATCC 43255, CCUG 19126, VPI 10463

Strain history: CIP <- 2008, Ph. Bouvet, Inst. Pasteur, Paris, France: strain AIP 10044, Clostridium difficile <- T. D. Wilkins

NCBI tax ID(s): 499175 (strain), 1496 (species)

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When using BacDive for research please cite our paper

Clostridioides difficile CIP 109240 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Human abdominal wound.

  1. Gram-positive
  2. rod-shaped
  3. anaerobe
  4. mesophilic
  5. 16S sequence
  6. Bacteria
  7. genome sequence
  • Information on genomic background e.g. entries in nucleic sequence databass Sequence informationarrow_down
    • 16S Sequence information: Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries.
    Sequence accession descriptionarrow to sort Seq. accession numberarrow to sort Sequence length (bp)arrow to sort Sequence databasearrow to sort Associated NCBI tax IDarrow to sort
    [Ref.: #124043] Clostridium difficile strain CD17 clone 2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer and tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence. HQ996199 427
    GenBank
    ENA
    		 1496 tax ID *
    [Ref.: #124043] Clostridium difficile strain CD17 clone 2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer and tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence. HQ996200 427
    GenBank
    ENA
    		 1496 tax ID *
    [Ref.: #124043] Clostridium difficile strain CD17 clone 2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer and tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence. HQ996201 545
    GenBank
    ENA
    		 1496 tax ID *
    [Ref.: #124043] Clostridium difficile strain CD17 clone 2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer and tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence. HQ996202 323
    GenBank
    ENA
    		 1496 tax ID *
    [Ref.: #124043] Clostridium difficile strain CD17 clone 2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer and tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence. HQ996203 385
    GenBank
    ENA
    		 1496 tax ID *
    Genome sequence information: Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries.
    Sequence accession descriptionarrow to sort Seq. accession numberarrow to sort Assembly levelarrow to sort Sequence databasearrow to sort Associated NCBI tax IDarrow to sort
    [Ref.: #66792] Clostridioides difficile ATCC 43255 GCA_000155025 chromosome
    GenBank
    ENA
    		 499175 tax ID *
    [Ref.: #66792] Clostridioides difficile VPI 10463 GCA_001995155 contig
    GenBank
    ENA
    		 1496 tax ID *
    [Ref.: #66792] Clostridioides difficile strain VPI 10463 1496.1555 wgs
    PATRIC
    		 1496 tax ID *
    [Ref.: #66792] Clostridium difficile ATCC 43255 499175.4 wgs
    PATRIC
    		 499175 tax ID *
    [Ref.: #66792] Clostridioides difficile ATCC 43255 2512047057 draft
    JGI IMG/M
    		 499175 tax ID *
  • Availability in culture collections External linksarrow_down
    • [Ref.: #37003] Culture collection no. CIP 109240, ATCC 43255, CCUG 19126, VPI 10463
    [Ref.: #94102] SI-ID 41740 *
    Literature: Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries.
    arrow to sort Titlearrow to sort Authorsarrow to sort Journalarrow to sort DOIarrow to sort Yeararrow to sort
    Pathogenicity A new phenothiazine derivate is active against Clostridioides difficile and shows low cytotoxicity. Ronco T, Aragao FM, Saaby L, Christensen JB, Permin A, Williams AR, Thamsborg SM, Olsen RH PLoS One 10.1371/journal.pone.0258207 2021 *
    Pathogenicity Murine Intrarectal Instillation of Purified Recombinant Clostridioides difficile Toxins Enables Mechanistic Studies of Pathogenesis. Markham NO, Bloch SC, Shupe JA, Laubacher EN, Thomas AK, Kroh HK, Childress KO, Peritore-Galve FC, Washington MK, Coffey RJ, Lacy DB Infect Immun 10.1128/IAI.00543-20 2021 *
    Metabolism Detection and elimination of a novel non-toxigenic Clostridioides difficile strain from the microbiota of a mouse colony. Maslanka JR, Gu CH, Zarin I, Denny JE, Broadaway S, Fett B, Mattei LM, Walk ST, Abt MC Gut Microbes 10.1080/19490976.2020.1851999 2020 *
    Pathogenicity Infection With Clostridioides difficile Attenuated Collagen-Induced Arthritis in Mice and Involved Mesenteric Treg and Th2 Polarization. Schmidt CJ, Wenndorf K, Ebbers M, Volzke J, Muller M, Strubing J, Kriebel K, Kneitz S, Kreikemeyer B, Muller-Hilke B Front Immunol 10.3389/fimmu.2020.571049 2020 *
    Proteome Impact of subinhibitory concentrations of metronidazole on proteome of Clostridioides difficile strains with different levels of susceptibility. Doan TH, Yen-Nicolay S, Bernet-Camard MF, Martin-Verstraete I, Pechine S PLoS One 10.1371/journal.pone.0241903 2020 *
    Pathogenicity Chemical Space Exploration around Thieno[3,2-d]pyrimidin-4(3H)-one Scaffold Led to a Novel Class of Highly Active Clostridium difficile Inhibitors. Shao X, AbdelKhalek A, Abutaleb NS, Velagapudi UK, Yoganathan S, Seleem MN, Talele TT J Med Chem 10.1021/acs.jmedchem.9b01198 2019 *
    Pathogenicity Designed Ankyrin Repeat Protein (DARPin) Neutralizers of TcdB from Clostridium difficile Ribotype 027. Peng Z, Simeon R, Mitchell SB, Zhang J, Feng H, Chen Z mSphere 10.1128/mSphere.00596-19 2019 *
    Pathogenicity Toxin B Variants from Clostridium difficile Strains VPI 10463 and NAP1/027 Share Similar Substrate Profile and Cellular Intoxication Kinetics but Use Different Host Cell Entry Factors. Lopez-Urena D, Orozco-Aguilar J, Chaves-Madrigal Y, Ramirez-Mata A, Villalobos-Jimenez A, Ost S, Quesada-Gomez C, Rodriguez C, Papatheodorou P, Chaves-Olarte E Toxins (Basel) 10.3390/toxins11060348 2019 *
    Phylogeny Modified Mouse Model of Clostridioides difficile Infection as a Platform for Probiotic Efficacy Studies. De Wolfe TJ, Kates AE, Barko L, Darien BJ, Safdar N Antimicrob Agents Chemother 10.1128/AAC.00111-19 2019 *
    Pathogenicity A Protein Microarray Assay for Serological Determination of Antigen-specific Antibody Responses Following Clostridium difficile Infection. Negm OH, Hamed M, Monaghan TM J Vis Exp 10.3791/57399 2018 *

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