Strain identifier

BacDive ID: 13693

Type strain: Yes

Species: Paracoccus denitrificans

Culture col. no.: CCUG 30144, LMG 4049, LMG 4219, IFO 13301, DSM 413, ATCC 17741, ATCC 19367, CCM 982, LMD 22.21, NCIB 8944, JCM 21484, IAM 15021, NBRC 102528, NCCB 22021

Strain history: IAM 15021 <-- NCCB 22021 <-- LMD 22.21 <-- M. W. Beijerinck.

NCBI tax ID(s): 1302247 (strain), 266 (species)

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Paracoccus denitrificans CCUG 30144 is an aerobe, mesophilic bacterium that was isolated from Soil,garden.

  1. aerobe
  2. mesophilic
  3. 16S sequence
  4. Bacteria
  5. genome sequence
  • Information on physiology and metabolism Physiology and metabolismarrow_down
  • [Ref.: #49937] Oxygen tolerance aerobe
    [Ref.: #20216] Observation Degradation of creatine
    Fatty acid profile
    Metadata FA analysis
    Type of FA analysis whole cell analysis
    Incubation medium
    Incubation temperature (°C)
    Incubation time (d)
    Incubation pH
    Incubation oxygen condition
    Software version
    Library/peak naming table
    Method/protocol CCUG
    Cutoff value
    Reference [Ref.: #49937]
    Fatty acidarrow to sort Percentagearrow to sort ECLarrow to sort
    C18:1 ω7c /12t/9t 72.3
    C16:0 13.2
    C18:0 4.5
    C10:0 3OH 2.7
    unknown 11.798 2.5
    C19:0 CYCLO ω8c 1.9
    Unidentified 1.6
    C14:0 3OH/C16:1 ISO I 1.2
    C17:0 0.9

  • Availability in culture collections External linksarrow_down
  • [Ref.: #186] Culture collection no. CCUG 30144, LMG 4049, LMG 4219, IFO 13301, DSM 413, ATCC 17741, ATCC 19367, CCM 982, LMD 22.21, NCIB 8944, JCM 21484, IAM 15021, NBRC 102528, NCCB 22021
    [Ref.: #20218] Associated Passport(s) in StrainInfo 16103, 16114, 16100, 16101, 235066, 16110
    Literature: Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries.
    Titlearrow to sort Authorsarrow to sort Journalarrow to sort DOIarrow to sort Yeararrow to sort Mesharrow to sort Topicarrow to sort Topic2arrow to sort
    Cytochrome c' of Paracoccus denitrificans. Gilmour R, Goodhew CF, Pettigrew GW Biochim Biophys Acta 10.1016/s0005-2728(05)80208-7 1991 Amino Acid Sequence, Amino Acids/analysis, Chromatium/enzymology, Chromatography, Gel, Cytochrome c Group/*isolation & purification, Molecular Sequence Data, Paracoccus denitrificans/*enzymology, Protein Conformation, Rhodobacter capsulatus/enzymology, Rhodospirillum rubrum/enzymology Enzymology Genetics *
    The regulation of hydrogenase formation as a differentiating character of strains of Paracoccus denitrificans. Nokhal TH, Schlegel HG Antonie Van Leeuwenhoek 10.1007/BF00444069 1980 Aerobiosis, Anaerobiosis, Cell Membrane/enzymology, Cell-Free System, Culture Media, Enzyme Induction, Hydrogenase, Oxidoreductases/*biosynthesis/metabolism, Paracoccus denitrificans/*classification/enzymology/growth & development Enzymology Cultivation *
    Integration of heterologous DNA into the genome of Paracoccus denitrificans is mediated by a family of IS1248-related elements and a second type of integrative recombination event. Van Spanning RJ, Reijnders WN, Stouthamer AH J Bacteriol 10.1128/jb.177.16.4772-4778.1995 1995 Base Sequence, Blotting, Southern, DNA Transposable Elements/*genetics, DNA, Bacterial/*genetics, Genetic Vectors, Genome, Bacterial, Gram-Negative Chemolithotrophic Bacteria/genetics, Molecular Sequence Data, Paracoccus denitrificans/classification/*genetics, *Recombination, Genetic, Restriction Mapping, Sequence Analysis, DNA, Thiobacillus/genetics Genetics Transcriptome *
    The surface-charge asymmetry and dimerisation of cytochrome c550 from Paracoccus denitrificans--implications for the interaction with cytochrome c peroxidase. Pettigrew GW, Gilmour R, Goodhew CF, Hunter DJ, Devreese B, Van Beeumen J, Costa C, Prazeres S, Krippahl L, Palma PN, Moura I, Moura JJ Eur J Biochem 10.1046/j.1432-1327.1998.2580559.x 1998 Amino Acid Sequence, Bacterial Proteins/chemistry, Carbodiimides/metabolism, Computer Simulation, Cross-Linking Reagents/metabolism, Cytochrome c Group/*chemistry, Cytochrome-c Peroxidase/*metabolism, Dimerization, Electron Transport/physiology, Kinetics, Magnetic Resonance Spectroscopy, Models, Molecular, Molecular Sequence Data, Osmolar Concentration, Oxidation-Reduction, Paracoccus denitrificans/*chemistry, Protein Binding, Sequence Analysis Metabolism Enzymology *
    A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov. Rainey FA, Kelly DP, Stackebrandt E, Burghardt J, Hiraishi A, Katayama Y, Wood AP Int J Syst Bacteriol 10.1099/00207713-49-2-645 1999 Cytochrome c Group/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/physiology, Paracoccus denitrificans/*classification/genetics/physiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA Phylogeny Genetics *
    Production of ubiquinone-10 using bacteria. Yoshida H, Kotani Y, Ochiai K, Araki K J Gen Appl Microbiol 10.2323/jgam.44.19 1998 Biotechnology *
    Paracoccus yeeii sp. nov. (formerly CDC group EO-2), a novel bacterial species associated with human infection. Daneshvar MI, Hollis DG, Weyant RS, Steigerwalt AG, Whitney AM, Douglas MP, Macgregor JP, Jordan JG, Mayer LW, Rassouli SM, Barchet W, Munro C, Shuttleworth L, Bernard K J Clin Microbiol 10.1128/JCM.41.3.1289-1294.2003 2003 DNA, Bacterial/analysis, Gram-Negative Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Paracoccus/*classification/genetics, Phenotype, Phylogeny, RNA, Ribosomal, 16S/*analysis/genetics Phylogeny Pathogenicity *
    A novel enzyme, D-3-hydroxyaspartate aldolase from Paracoccus denitrificans IFO 13301: purification, characterization, and gene cloning. Liu JQ, Dairi T, Itoh N, Kataoka M, Shimizu S Appl Microbiol Biotechnol 10.1007/s00253-003-1238-2 2003 Amino Acid Sequence, Aspartic Acid/analogs & derivatives/*metabolism, Base Sequence, Cloning, Molecular, Fructose-Bisphosphate Aldolase/*genetics/isolation & purification/*metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, Molecular Weight, Paracoccus denitrificans/*enzymology, Substrate Specificity, Temperature Enzymology Metabolism *
    Growth and nitrite and nitrous oxide accumulation of Paracoccus denitrificans ATCC 19367 in the presence of selected pesticides. Saez F, Pozo C, Gomez MA, Rodelas B, Gonzalez-Lopez J Environ Toxicol Chem 10.1897/02-351 2003 Carbon Dioxide/analysis, Nitrates/*pharmacokinetics, Nitrous Oxide/*pharmacokinetics, Paracoccus denitrificans/*growth & development/physiology, Pesticides/*toxicity, Water Pollutants, Chemical/*toxicity Enzymology *
    Potential role of nitrite for abiotic Fe(II) oxidation and cell encrustation during nitrate reduction by denitrifying bacteria. Klueglein N, Zeitvogel F, Stierhof YD, Floetenmeyer M, Konhauser KO, Kappler A, Obst M Appl Environ Microbiol 10.1128/AEM.03277-13 2013 Acetates/metabolism, Anaerobiosis, Betaproteobacteria/growth & development/*metabolism/ultrastructure, Comamonadaceae/growth & development/*metabolism/ultrastructure, *Denitrification, Ferrous Compounds/*metabolism, Microscopy, Electron, Minerals/metabolism, Nitrates/*metabolism, Nitrites/*metabolism, Oxidation-Reduction, Periplasm/metabolism Metabolism *

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