Information on genomic background e.g. entries in nucleic sequence databass Sequence information
16S Sequence information:
Only first 5 entries are displayed. Click here to see all. Click here to see only first 5 entries.
Sequence accession description
Seq. accession number
Sequence length (bp)
Sequence database
Associated NCBI tax ID
[Ref.: #20218]
Paracoccus denitrificans strain ATCC 17741 clone ControlA04 16S ribosomal RNA gene, partial sequence
JF508186
661
266 tax ID
*
[Ref.: #20218]
Paracoccus denitrificans strain ATCC 17741 clone ControlB11 16S ribosomal RNA gene, partial sequence
JF508203
673
266 tax ID
*
[Ref.: #20218]
Paracoccus denitrificans 16S rRNA gene, strain ATCC 17741T
Y16927
1395
266 tax ID
*
[Ref.: #20218]
Paracoccus denitrificans 16S rRNA gene, strain DSM 413
Y16929
1395
266 tax ID
*
[Ref.: #20218]
Paracoccus pantotrophus 16S rRNA gene, strain DSM 65
Y16935
1395
82367 tax ID
*
[Ref.: #20218]
Paracoccus denitrificans strain JCM6892 16S rRNA gene
Y17511
1418
266 tax ID
*
[Ref.: #20218]
P.denitrificans 16S rRNA
X69159
1458
266 tax ID
*
[Ref.: #20218]
Paracoccus pantotrophus 16S rRNA gene, strain LMG 4218
Y16936
1395
82367 tax ID
*
[Ref.: #20218]
Paracoccus denitrificans gene for 16S rRNA, partial sequence, strain: NBRC 102528
AB681862
1388
266 tax ID
*
[Ref.: #20218]
Paracoccus pantotrophus gene for 16S rRNA, partial sequence, strain: NBRC 16712
AB681113
1388
82367 tax ID
*
[Ref.: #20218]
Paracoccus denitrificans 16S rRNA gene, strain ATCC 19367
Y16930
1395
266 tax ID
*
Availability in culture collections External links
[Ref.: #186]
Culture collection no.
CCUG 30144 , LMG 4049 , LMG 4219 , IFO 13301 , DSM 413 , ATCC 17741 , ATCC 19367 , CCM 982 , LMD 22.21, NCIB 8944, JCM 21484 , IAM 15021, NBRC 102528 , NCCB 22021
[Ref.: #20218]
Associated Passport(s) in StrainInfo
16103 , 16114 , 16100 , 16101 , 235066 , 16110
Literature:
Only first 10 entries are displayed. Click here to see all. Click here to see only first 10 entries.
Topic
Title
Authors
Journal
DOI
Year
Enzymology
Cytochrome c' of Paracoccus denitrificans.
Gilmour R, Goodhew CF, Pettigrew GW
Biochim Biophys Acta
10.1016/s0005-2728(05)80208-7
1991
*
Enzymology
The regulation of hydrogenase formation as a differentiating character of strains of Paracoccus denitrificans.
Nokhal TH, Schlegel HG
Antonie Van Leeuwenhoek
10.1007/BF00444069
1980
*
Genetics
Integration of heterologous DNA into the genome of Paracoccus denitrificans is mediated by a family of IS1248-related elements and a second type of integrative recombination event.
Van Spanning RJ, Reijnders WN, Stouthamer AH
J Bacteriol
10.1128/jb.177.16.4772-4778.1995
1995
*
Metabolism
The surface-charge asymmetry and dimerisation of cytochrome c550 from Paracoccus denitrificans--implications for the interaction with cytochrome c peroxidase.
Pettigrew GW, Gilmour R, Goodhew CF, Hunter DJ, Devreese B, Van Beeumen J, Costa C, Prazeres S, Krippahl L, Palma PN, Moura I, Moura JJ
Eur J Biochem
10.1046/j.1432-1327.1998.2580559.x
1998
*
Phylogeny
A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov.
Rainey FA, Kelly DP, Stackebrandt E, Burghardt J, Hiraishi A, Katayama Y, Wood AP
Int J Syst Bacteriol
10.1099/00207713-49-2-645
1999
*
Biotechnology
Production of ubiquinone-10 using bacteria.
Yoshida H, Kotani Y, Ochiai K, Araki K
J Gen Appl Microbiol
10.2323/jgam.44.19
1998
*
Phylogeny
Paracoccus yeeii sp. nov. (formerly CDC group EO-2), a novel bacterial species associated with human infection.
Daneshvar MI, Hollis DG, Weyant RS, Steigerwalt AG, Whitney AM, Douglas MP, Macgregor JP, Jordan JG, Mayer LW, Rassouli SM, Barchet W, Munro C, Shuttleworth L, Bernard K
J Clin Microbiol
10.1128/JCM.41.3.1289-1294.2003
2003
*
Enzymology
A novel enzyme, D-3-hydroxyaspartate aldolase from Paracoccus denitrificans IFO 13301: purification, characterization, and gene cloning.
Liu JQ, Dairi T, Itoh N, Kataoka M, Shimizu S
Appl Microbiol Biotechnol
10.1007/s00253-003-1238-2
2003
*
Enzymology
Growth and nitrite and nitrous oxide accumulation of Paracoccus denitrificans ATCC 19367 in the presence of selected pesticides.
Saez F, Pozo C, Gomez MA, Rodelas B, Gonzalez-Lopez J
Environ Toxicol Chem
10.1897/02-351
2003
*
Metabolism
Potential role of nitrite for abiotic Fe(II) oxidation and cell encrustation during nitrate reduction by denitrifying bacteria.
Klueglein N, Zeitvogel F, Stierhof YD, Floetenmeyer M, Konhauser KO, Kappler A, Obst M
Appl Environ Microbiol
10.1128/AEM.03277-13
2013
*
Enzymology
Molecular, Physiological and Phenotypic Characterization of Paracoccus denitrificans ATCC 19367 Mutant Strain P-87 Producing Improved Coenzyme Q10.
Tokdar P, Sanakal A, Ranadive P, Khora SS, George S, Deshmukh SK
Indian J Microbiol
10.1007/s12088-014-0506-4
2014
*
Phylogeny
Paracoccus suum sp. nov., isolated from a pig farm dust collector.
Heo J, Cho HY, Kim JS, Hong SB, Kwon SW, Kim SJ
Int J Syst Evol Microbiol
10.1099/ijsem.0.003226
2019
*
Genetics
Complete genome sequence of Paracoccus denitrificans ATCC 19367 and its denitrification characteristics.
Si YY, Xu KH, Yu XY, Wang MF, Chen XH
Can J Microbiol
10.1139/cjm-2019-0037
2019
*
Metabolism
Temperature and oxygen level determine N2 O respiration activities of heterotrophic N2 O-reducing bacteria: Biokinetic study.
Zhou Y, Suenaga T, Qi C, Riya S, Hosomi M, Terada A
Biotechnol Bioeng
10.1002/bit.27654
2020
*
Metabolism
Enhancement of biological denitrification by the addition of novel sRNA Pda200 under antibiotic pressure.
Wang M, Liang Y, Li F, Shen S, Huang X, Sun Y
Bioresour Technol
10.1016/j.biortech.2022.128113
2022
*
References
#186
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 413
#35203
; Curators of the CIP;
#37731
; Curators of the CIP;
#49937
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 30144
#67770
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
Please take the time to answer our:
Survey