Pseudooceanicola batsensis (DSM 15984, ATCC BAA-863, KCTC 12145)

Name: Pseudooceanicola batsensis (DSM 15984, ATCC BAA-863, KCTC 12145)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13687

Type strain

Culture col. no. DSM 15984 ATCC BAA-863 KCTC 12145 HTCC 2597

NCBI tax ID(s) 252305 314255

Special Collections DSMZ KCTC Literature strains

History <- J.-C. Cho

Links

Pseudooceanicola batsensis DSM 15984 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative rod-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 127232

ATCC BAA-863,DSM 15984,KCTC 12145,CECT 7860

@ref 20215

Last LPSN update 2026-02-09 11:21:12

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Pseudooceanicola

Species Pseudooceanicola batsensis

Full scientific name Pseudooceanicola batsensis (Cho and Giovannoni 2004) Lai et al. 2015

Synonyms (1)

Oceanicola batsensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30164	negative	1.1 µm	0.6 µm	rod-shaped

Colony morphology

6220

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6220	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
6220	positive	growth	30
30164	positive	growth	4.0-40
30164	positive	optimum	30

Culture pH

@ref	Ability	Type	PH	PH range
30164	positive	optimum	7.75
30164	positive	growth	6.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

30164

Oxygen toleranceaerobe

Spore formation

30164

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30164	NaCl	positive	growth	0.75-10 %
30164	NaCl	positive	optimum	5.4 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30164	62064 ChEBI	2,3-butanediol	+	carbon source
30164	30089 ChEBI	acetate	+	carbon source
30164	22599 ChEBI	arabinose	+	carbon source
30164	15740 ChEBI	formate	+	carbon source
30164	28260 ChEBI	galactose	+	carbon source
30164	24265 ChEBI	gluconate	+	carbon source
30164	29987 ChEBI	glutamate	+	carbon source
30164	17754 ChEBI	glycerol	+	carbon source
30164	28087 ChEBI	glycogen	+	carbon source
30164	18403 ChEBI	L-arabitol	+	carbon source
30164	24996 ChEBI	lactate	+	carbon source
30164	15792 ChEBI	malonate	+	carbon source
30164	29864 ChEBI	mannitol	+	carbon source
30164	17268 ChEBI	myo-inositol	+	carbon source
30164	17272 ChEBI	propionate	+	carbon source
30164	17148 ChEBI	putrescine	+	carbon source
30164	17822 ChEBI	serine	+	carbon source
30164	30911 ChEBI	sorbitol	+	carbon source
30164	26986 ChEBI	threonine	+	carbon source
30164	53423 ChEBI	tween 40	+	carbon source

Enzymes

@ref	Value	Activity	Ec
6220	catalase	+	1.11.1.6
30164	catalase	+	1.11.1.6
30164	cytochrome oxidase	+	1.9.3.1
6220	cytochrome-c oxidase	+	1.9.3.1
30164	urease	+	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	methylglyoxal degradation	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	L-lactaldehyde degradation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	Entner Doudoroff pathway	100	10 of 10
66794	CMP-KDO biosynthesis	100	4 of 4
66794	vitamin B1 metabolism	100	13 of 13
66794	ethanol fermentation	100	2 of 2
66794	octane oxidation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	quinate degradation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	valine metabolism	100	9 of 9
66794	coenzyme A metabolism	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	resorcinol degradation	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	denitrification	100	2 of 2
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	phenylalanine metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	propionate fermentation	90	9 of 10
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	vitamin B12 metabolism	88.24	30 of 34
66794	purine metabolism	87.23	82 of 94
66794	pyrimidine metabolism	86.67	39 of 45
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
66794	NAD metabolism	83.33	15 of 18
66794	proline metabolism	81.82	9 of 11
66794	vitamin B6 metabolism	81.82	9 of 11
66794	tryptophan metabolism	81.58	31 of 38
66794	peptidoglycan biosynthesis	80	12 of 15
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	alanine metabolism	79.31	23 of 29
66794	photosynthesis	78.57	11 of 14
66794	tyrosine metabolism	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	sulfopterin metabolism	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	phenol degradation	75	15 of 20
66794	toluene degradation	75	3 of 4
66794	cyclohexanol degradation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	methionine metabolism	73.08	19 of 26
66794	pentose phosphate pathway	72.73	8 of 11
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	glutathione metabolism	71.43	10 of 14
66794	arginine metabolism	70.83	17 of 24
66794	oxidative phosphorylation	67.03	61 of 91
66794	allantoin degradation	66.67	6 of 9
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	IAA biosynthesis	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	enterobactin biosynthesis	66.67	2 of 3
66794	3-phenylpropionate degradation	66.67	10 of 15
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	glycolysis	64.71	11 of 17
66794	non-pathway related	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	histidine metabolism	62.07	18 of 29
66794	sulfate reduction	61.54	8 of 13
66794	urea cycle	61.54	8 of 13
66794	lipid metabolism	61.29	19 of 31
66794	lipoate biosynthesis	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	creatinine degradation	60	3 of 5
66794	lysine metabolism	57.14	24 of 42
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	cysteine metabolism	55.56	10 of 18
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	glycine metabolism	50	5 of 10
66794	phenylmercury acetate degradation	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	ketogluconate metabolism	50	4 of 8
66794	glycogen biosynthesis	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	degradation of pentoses	46.43	13 of 28
66794	nitrate assimilation	44.44	4 of 9
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	arachidonate biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	factor 420 biosynthesis	40	2 of 5
66794	glycogen metabolism	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	glycine betaine biosynthesis	40	2 of 5
66794	polyamine pathway	39.13	9 of 23
66794	arachidonic acid metabolism	38.89	7 of 18
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	carnitine metabolism	37.5	3 of 8
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	metabolism of disaccharids	36.36	4 of 11
66794	d-xylose degradation	36.36	4 of 11
66794	sphingosine metabolism	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	degradation of sugar acids	32	8 of 25
66794	degradation of hexoses	27.78	5 of 18
66794	ascorbate metabolism	27.27	6 of 22
66794	carotenoid biosynthesis	27.27	6 of 22
66794	alginate biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location
6220	seawater	Atlantic Ocean, Sargasso Sea

Taxonmaps

69479

Global distribution of 16S sequence AY424898 (>99% sequence identity) for Pseudooceanicola batsensis subclade from Microbeatlas

Aquatic Samples	362
Soil Samples	2
Animal Samples	3
Plant Samples	4
Total Samples	371

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6220	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6220	Oceanicola batsensis strain HTCC2597 16S ribosomal RNA gene, partial sequence	AY424898	1425		314255
124043	Oceanicola batsensis strain KCTC12145 16S ribosomal RNA gene, partial sequence.	DQ915615	1307		314255

GC content

30164

GC-content (mol%)67.3

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Anti-Larval and Anti-Algal Natural Products from Marine Microorganisms as Sources of Anti-Biofilm Agents.	Wang KL, Dou ZR, Gong GF, Li HF, Jiang B, Xu Y.	Mar Drugs	10.3390/md20020090	2022
	Antifouling Napyradiomycins from Marine-Derived Actinomycetes Streptomyces aculeolatus.	Pereira F, Almeida JR, Paulino M, Grilo IR, Macedo H, Cunha I, Sobral RG, Vasconcelos V, Gaudencio SP.	Mar Drugs	10.3390/md18010063	2020
Enzymology	Nanoparticle-associated single step hydrogen fermentation for the conversion of starch potato waste biomass by thermophilic Parageobacillus thermoglucosidasius.	Singhvi M, Maharjan A, Thapa A, Jun HB, Soo Kim B.	Bioresour Technol	10.1016/j.biortech.2021.125490	2021
	Identification of 8-Azaguanine Biosynthesis-Related Genes Provides Insight Into the Enzymatic and Non-enzymatic Biosynthetic Pathway for 1,2,3-Triazole.	Hou F, Wan Y, Gan Q, Xian M, Huang W.	Front Bioeng Biotechnol	10.3389/fbioe.2020.603514	2020
Genetics	Ecological Genomics of the Uncultivated Marine Roseobacter Lineage CHAB-I-5.	Zhang Y, Sun Y, Jiao N, Stepanauskas R, Luo H.	Appl Environ Microbiol	10.1128/aem.03678-15	2016
Genetics	High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.	Christie-Oleza JA, Miotello G, Armengaud J.	BMC Genomics	10.1186/1471-2164-13-73	2012
Metabolism	Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria.	Christie-Oleza JA, Pina-Villalonga JM, Bosch R, Nogales B, Armengaud J.	Mol Cell Proteomics	10.1074/mcp.m111.013110	2012
Metabolism	Genetic dissection of tropodithietic acid biosynthesis by marine roseobacters.	Geng H, Bruhn JB, Nielsen KF, Gram L, Belas R.	Appl Environ Microbiol	10.1128/aem.02339-07	2008
Genetics	Ecological genomics of marine Roseobacters.	Moran MA, Belas R, Schell MA, Gonzalez JM, Sun F, Sun S, Binder BJ, Edmonds J, Ye W, Orcutt B, Howard EC, Meile C, Palefsky W, Goesmann A, Ren Q, Paulsen I, Ulrich LE, Thompson LS, Saunders E, Buchan A.	Appl Environ Microbiol	10.1128/aem.02580-06	2007
Genetics	Genome sequences of Oceanicola granulosus HTCC2516(T) and Oceanicola batsensis HTCC2597(TDelta).	Thrash JC, Cho JC, Vergin KL, Giovannoni SJ	J Bacteriol	10.1128/JB.00412-10	2010
Phylogeny	Halioglobus sediminis sp. nov., isolated from coastal sediment.	Han JR, Ye MQ, Wang C, Du ZJ.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003366	2019
Phylogeny	Sphingomonas lacus sp. nov., an astaxanthin-dideoxyglycoside-producing species isolated from soil near a pond.	Kim JH, Kim SH, Kim KH, Lee PC.	Int J Syst Evol Microbiol	10.1099/ijs.0.000337	2015
Phylogeny	Thermomonas carbonis sp. nov., isolated from the soil of a coal mine.	Wang L, Zheng S, Wang D, Wang L, Wang G.	Int J Syst Evol Microbiol	10.1099/ijs.0.063800-0	2014
Metabolism	Paenibacillus cellulositrophicus sp. nov., a cellulolytic bacterium from Thai soil.	Akaracharanya A, Lorliam W, Tanasupawat S, Lee KC, Lee JS.	Int J Syst Evol Microbiol	10.1099/ijs.0.010298-0	2009
Phylogeny	Pseudooceanicola aestuarii sp. nov., isolated from the Jiulong River Estuary in PR China.	Li Y, Wang Y, Wang Y, Lin F, Zhu H, Lai Q, Shao Z, Zhou H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004520	2020
Phylogeny	Pseudooceanicola atlanticus gen. nov. sp. nov., isolated from surface seawater of the Atlantic Ocean and reclassification of Oceanicola batsensis, Oceanicola marinus, Oceanicola nitratireducens, Oceanicola nanhaiensis, Oceanicola antarcticus and Oceanicola flagellatus, as Pseudooceanicola batsensis comb. nov., Pseudooceanicola marinus comb. nov., Pseudooceanicola nitratireducens comb. nov., Pseudooceanicola nanhaiensis comb. nov., Pseudooceanicola antarcticus comb. nov., and Pseudooceanicola flagellatus comb. nov.	Lai Q, Li G, Liu X, Du Y, Sun F, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-015-0398-2	2015
Phylogeny	Oceanicola antarcticus sp. nov. and Oceanicola flagellatus sp. nov., moderately halophilic bacteria isolated from seawater.	Huo YY, Li ZY, You H, Wang CS, Post AF, Oren A, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.062588-0	2014
Phylogeny	Oceanicola nitratireducens sp. nov., a marine alphaproteobacterium isolated from the South China Sea.	Zheng Q, Chen C, Wang YN, Jiao N	Int J Syst Evol Microbiol	10.1099/ijs.0.016311-0	2009
Phylogeny	Oceanicola pacificus sp. nov., isolated from a deep-sea pyrene-degrading consortium.	Yuan J, Lai Q, Wang B, Sun F, Liu X, Du Y, Li G, Gu L, Zheng T, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.003400-0	2009
Phylogeny	Oceanicola marinus sp. nov., a marine alphaproteobacterium isolated from seawater collected off Taiwan.	Lin KY, Sheu SY, Chang PS, Cho JC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.65020-0	2007
Phylogeny	Oceanicola granulosus gen. nov., sp. nov. and Oceanicola batsensis sp. nov., poly-beta-hydroxybutyrate-producing marine bacteria in the order 'Rhodobacterales'.	Cho JC, Giovannoni SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.03015-0	2004

References

#6220	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15984
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26514	IJSEM 1129 2004 ( DOI 10.1099/ijs.0.03015-0 , PubMed 15280281 )
#30164	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26514
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudooceanicola batsensis (DSM 15984, ATCC BAA-863, KCTC 12145)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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