Name: Pseudooceanicola batsensis DSM 15984
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13687

Type strain:

Species: Pseudooceanicola batsensis

Culture col. no.: DSM 15984, ATCC BAA-863, KCTC 12145, HTCC 2597

Strain history: <- J.-C. Cho

NCBI tax ID(s): 252305 (strain), 314255 (species)

SI-ID 127232

ATCC BAA-863, DSM 15984, KCTC 12145, CECT 7860

Section

Pseudooceanicola batsensis DSM 15984 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Pseudooceanicola*
	Species	**Pseudooceanicola batsensis**
	Full Scientific Name (LPSN)	Pseudooceanicola batsensis (Cho and Giovannoni 2004) Lai et al. 2015

Synonym

Oceanicola batsensis

Information on morphological and physiological properties Morphology

[Ref.: #30164]	Gram stain	negative

[Ref.: #30164]	Cell length	1.1 µm

[Ref.: #30164]	Cell width	0.6 µm

[Ref.: #30164]	Cell shape	rod-shaped

[Ref.: #30164]	Motility	no

[Ref.: #6220]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6220]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6220]

Culture medium growth

[Ref.: #6220]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6220]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6220]	growth	30 °C
[Ref.: #30164]	growth	4.0-40 °C
[Ref.: #30164]	optimum	30 °C

[Ref.: #6220]	Temperature range	mesophilic
[Ref.: #30164]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30164]			optimum	7.75
[Ref.: #30164]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30164]

Oxygen tolerance

aerobe

[Ref.: #30164]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30164]		NaCl		growth	0.75-10	%
[Ref.: #30164]		NaCl		optimum	5.4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30164]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #30164]	acetate ChEBI	+	carbon source
[Ref.: #30164]	arabinose ChEBI	+	carbon source
[Ref.: #30164]	formate ChEBI	+	carbon source
[Ref.: #30164]	galactose ChEBI	+	carbon source
[Ref.: #30164]	gluconate ChEBI	+	carbon source
[Ref.: #30164]	glutamate ChEBI	+	carbon source
[Ref.: #30164]	glycerol ChEBI	+	carbon source
[Ref.: #30164]	glycogen ChEBI	+	carbon source
[Ref.: #30164]	L-arabitol ChEBI	+	carbon source
[Ref.: #30164]	lactate ChEBI	+	carbon source
[Ref.: #30164]	malonate ChEBI	+	carbon source
[Ref.: #30164]	mannitol ChEBI	+	carbon source
[Ref.: #30164]	myo-inositol ChEBI	+	carbon source
[Ref.: #30164]	propionate ChEBI	+	carbon source
[Ref.: #30164]	putrescine ChEBI	+	carbon source
[Ref.: #30164]	serine ChEBI	+	carbon source
[Ref.: #30164]	sorbitol ChEBI	+	carbon source
[Ref.: #30164]	threonine ChEBI	+	carbon source
[Ref.: #30164]	tween 40 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #6220]	catalase	+	1.11.1.6
[Ref.: #30164]	catalase	+	1.11.1.6
[Ref.: #30164]	cytochrome oxidase	+	1.9.3.1
[Ref.: #6220]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #30164]	urease	+	3.5.1.5

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	vitamin B1 metabolism	100	13 of 13
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	quinate degradation	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	resorcinol degradation	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	vitamin B12 metabolism	88.24	30 of 34
[Ref.: #66794]	purine metabolism	87.23	82 of 94
[Ref.: #66794]	pyrimidine metabolism	86.67	39 of 45
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	vitamin B6 metabolism	81.82	9 of 11
[Ref.: #66794]	tryptophan metabolism	81.58	31 of 38
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	alanine metabolism	79.31	23 of 29
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	tyrosine metabolism	78.57	11 of 14
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	phenol degradation	75	15 of 20
[Ref.: #66794]	toluene degradation	75	3 of 4
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	methionine metabolism	73.08	19 of 26
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	oxidative phosphorylation	67.03	61 of 91
[Ref.: #66794]	allantoin degradation	66.67	6 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	3-phenylpropionate degradation	66.67	10 of 15
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	histidine metabolism	62.07	18 of 29
[Ref.: #66794]	sulfate reduction	61.54	8 of 13
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	creatinine degradation	60	3 of 5
[Ref.: #66794]	lysine metabolism	57.14	24 of 42
[Ref.: #66794]	tetrahydrofolate metabolism	57.14	8 of 14
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	4-hydroxyphenylacetate degradation	50	5 of 10
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	degradation of pentoses	46.43	13 of 28
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	glycogen metabolism	40	2 of 5
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	degradation of sugar acids	32	8 of 25
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	ascorbate metabolism	27.27	6 of 22
[Ref.: #66794]	carotenoid biosynthesis	27.27	6 of 22
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6220]	Sample type/isolated from	seawater
[Ref.: #6220]	Geographic location (country and/or sea, region)	Atlantic Ocean, Sargasso Sea
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY424898 (>99% sequence identity) for Pseudooceanicola batsensis subclade from Microbeatlas

Aquatic Samples	362
Soil Samples	2
Animal Samples	3
Plant Samples	4
Total Samples	371

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6220]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6220]	Oceanicola batsensis strain HTCC2597 16S ribosomal RNA gene, partial sequence	AY424898	1425	ENA	314255 tax ID

[Ref.: #30164]

GC-content

67.3 mol%

Availability in culture collections External links

[Ref.: #6220]

Culture collection no.

DSM 15984, ATCC BAA-863, KCTC 12145, HTCC 2597

[Ref.: #82870]

SI-ID 127232

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudooceanicola aestuarii sp. nov., isolated from the Jiulong River Estuary in PR China.	Li Y, Wang Y, Wang Y, Lin F, Zhu H, Lai Q, Shao Z, Zhou H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004520	2020	*
Phylogeny	Pseudooceanicola atlanticus gen. nov. sp. nov., isolated from surface seawater of the Atlantic Ocean and reclassification of Oceanicola batsensis, Oceanicola marinus, Oceanicola nitratireducens, Oceanicola nanhaiensis, Oceanicola antarcticus and Oceanicola flagellatus, as Pseudooceanicola batsensis comb. nov., Pseudooceanicola marinus comb. nov., Pseudooceanicola nitratireducens comb. nov., Pseudooceanicola nanhaiensis comb. nov., Pseudooceanicola antarcticus comb. nov., and Pseudooceanicola flagellatus comb. nov.	Lai Q, Li G, Liu X, Du Y, Sun F, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-015-0398-2	2015	*
Phylogeny	Oceanicola antarcticus sp. nov. and Oceanicola flagellatus sp. nov., moderately halophilic bacteria isolated from seawater.	Huo YY, Li ZY, You H, Wang CS, Post AF, Oren A, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.062588-0	2014	*
Genetics	Genome sequences of Oceanicola granulosus HTCC2516(T) and Oceanicola batsensis HTCC2597(TDelta).	Thrash JC, Cho JC, Vergin KL, Giovannoni SJ	J Bacteriol	10.1128/JB.00412-10	2010	*
Phylogeny	Oceanicola nitratireducens sp. nov., a marine alphaproteobacterium isolated from the South China Sea.	Zheng Q, Chen C, Wang YN, Jiao N	Int J Syst Evol Microbiol	10.1099/ijs.0.016311-0	2009	*
Phylogeny	Oceanicola pacificus sp. nov., isolated from a deep-sea pyrene-degrading consortium.	Yuan J, Lai Q, Wang B, Sun F, Liu X, Du Y, Li G, Gu L, Zheng T, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.003400-0	2009	*
Phylogeny	Oceanicola marinus sp. nov., a marine alphaproteobacterium isolated from seawater collected off Taiwan.	Lin KY, Sheu SY, Chang PS, Cho JC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.65020-0	2007	*
Phylogeny	Oceanicola granulosus gen. nov., sp. nov. and Oceanicola batsensis sp. nov., poly-beta-hydroxybutyrate-producing marine bacteria in the order 'Rhodobacterales'.	Cho JC, Giovannoni SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.03015-0	2004	*

References

#6220

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15984

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30164

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26514 (see below)

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#82870

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID127232.1 )

#26514

IJSEM 1129 2004 ( DOI 10.1099/ijs.0.03015-0 , PubMed 15280281 )

* These data were automatically processed and therefore are not curated

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