Name: Oceanicola granulosus DSM 15982
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13685

Type strain:

Species: Oceanicola granulosus

Culture col. no.: DSM 15982, HTCC 2516

Strain history: <- J.-C. Cho

NCBI tax ID(s): 252302 (species)

SI-ID 127230

ATCC BAA-861, DSM 15982, KCTC 12143, CECT 7859

Other strains from Oceanicola granulosus

O. granulosus DSM 15983, HTCC 2523

Section

Oceanicola granulosus DSM 15982 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Oceanicola*
	Species	**Oceanicola granulosus**
	Full Scientific Name (LPSN)	Oceanicola granulosus Cho and Giovannoni 2004

Information on morphological and physiological properties Morphology

[Ref.: #30164]	Gram stain	negative

[Ref.: #30164]	Cell length	1.6 µm

[Ref.: #30164]	Cell width	0.75 µm

[Ref.: #30164]	Cell shape	rod-shaped

[Ref.: #30164]	Motility	no

[Ref.: #6218]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6218]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6218]

Culture medium growth

[Ref.: #6218]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6218]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6218]	growth	30 °C
[Ref.: #30164]	growth	4.0-40 °C
[Ref.: #30164]	optimum	28 °C

[Ref.: #6218]	Temperature range	mesophilic
[Ref.: #30164]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30164]			optimum	7.75
[Ref.: #30164]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30164]

Oxygen tolerance

aerobe

[Ref.: #30164]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30164]		NaCl		growth	0.25-10	%
[Ref.: #30164]		NaCl		optimum	5.1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30164]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #30164]	acetate ChEBI	+	carbon source
[Ref.: #30164]	alanine ChEBI	+	carbon source
[Ref.: #30164]	cellobiose ChEBI	+	carbon source
[Ref.: #30164]	citrate ChEBI	+	carbon source
[Ref.: #30164]	esculin ChEBI	+	hydrolysis
[Ref.: #30164]	formate ChEBI	+	carbon source
[Ref.: #30164]	galactose ChEBI	+	carbon source
[Ref.: #30164]	gluconate ChEBI	+	carbon source
[Ref.: #30164]	glucose ChEBI	+	carbon source
[Ref.: #30164]	glutamate ChEBI	+	carbon source
[Ref.: #30164]	glycogen ChEBI	+	carbon source
[Ref.: #30164]	inosine ChEBI	+	carbon source
[Ref.: #30164]	L-arabitol ChEBI	+	carbon source
[Ref.: #30164]	lactate ChEBI	+	carbon source
[Ref.: #30164]	lactose ChEBI	+	carbon source
[Ref.: #30164]	maltose ChEBI	+	carbon source
[Ref.: #30164]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30164]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30164]	propionate ChEBI	+	carbon source
[Ref.: #30164]	pyruvate ChEBI	+	carbon source
[Ref.: #30164]	ribose ChEBI	+	carbon source
[Ref.: #30164]	serine ChEBI	+	carbon source
[Ref.: #30164]	sucrose ChEBI	+	carbon source
[Ref.: #30164]	trehalose ChEBI	+	carbon source
[Ref.: #30164]	tween 80 ChEBI	+	carbon source
[Ref.: #30164]	uridine ChEBI	+	carbon source
[Ref.: #30164]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #6218]	catalase	+	1.11.1.6
[Ref.: #30164]	cytochrome oxidase	+	1.9.3.1
[Ref.: #6218]	cytochrome-c oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6218]	Sample type/isolated from	seawater
[Ref.: #6218]	Geographic location (country and/or sea, region)	Atlantic Ocean, Sargasso Sea
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY424896 (>99% sequence identity) for Oceanicola granulosus subclade from Microbeatlas

Aquatic Samples	2099
Soil Samples	86
Animal Samples	263
Plant Samples	19
Total Samples	2467

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6218]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6218]	Oceanicola granulosus strain HTCC2516 16S ribosomal RNA gene, partial sequence	AY424896	1418	ENA	252302 tax ID

[Ref.: #30164]

GC-content

71.5 mol%

Availability in culture collections External links

[Ref.: #6218]

Culture collection no.

DSM 15982, HTCC 2516

[Ref.: #82868]

SI-ID 127230

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Characterization of uronate dehydrogenases catalysing the initial step in an oxidative pathway.	Pick A, Schmid J, Sieber V	Microb Biotechnol	10.1111/1751-7915.12265	2015	*
Phylogeny	Pseudooceanicola atlanticus gen. nov. sp. nov., isolated from surface seawater of the Atlantic Ocean and reclassification of Oceanicola batsensis, Oceanicola marinus, Oceanicola nitratireducens, Oceanicola nanhaiensis, Oceanicola antarcticus and Oceanicola flagellatus, as Pseudooceanicola batsensis comb. nov., Pseudooceanicola marinus comb. nov., Pseudooceanicola nitratireducens comb. nov., Pseudooceanicola nanhaiensis comb. nov., Pseudooceanicola antarcticus comb. nov., and Pseudooceanicola flagellatus comb. nov.	Lai Q, Li G, Liu X, Du Y, Sun F, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-015-0398-2	2015	*
Genetics	Genome sequences of Oceanicola granulosus HTCC2516(T) and Oceanicola batsensis HTCC2597(TDelta).	Thrash JC, Cho JC, Vergin KL, Giovannoni SJ	J Bacteriol	10.1128/JB.00412-10	2010	*
Phylogeny	Wenxinia marina gen. nov., sp. nov., a novel member of the Roseobacter clade isolated from oilfield sediments of the South China Sea.	Ying JY, Wang BJ, Dai X, Yang SS, Liu SJ, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.64825-0	2007	*
Phylogeny	Oceanicola marinus sp. nov., a marine alphaproteobacterium isolated from seawater collected off Taiwan.	Lin KY, Sheu SY, Chang PS, Cho JC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.65020-0	2007	*
Phylogeny	Oceanicola granulosus gen. nov., sp. nov. and Oceanicola batsensis sp. nov., poly-beta-hydroxybutyrate-producing marine bacteria in the order 'Rhodobacterales'.	Cho JC, Giovannoni SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.03015-0	2004	*

References

#6218

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15982

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30164

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26514 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#82868

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID127230.1 )

#26514

IJSEM 1129 2004 ( DOI 10.1099/ijs.0.03015-0 , PubMed 15280281 )

* These data were automatically processed and therefore are not curated

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