Name: Flavobacterium piscis 412-R09
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 136841

Type strain:

Species: Flavobacterium piscis

Strain Designation: 412-R09

Culture col. no.: CIP 110846, CCUG 60099, CECT 7911

Strain history: CIP <- 2014, CCUG <- 2010 A.I. Vela, UCM, Madrid, Spain: strain 412-R09

NCBI tax ID(s): 1114874 (species)

SI-ID 392248

CECT 7911, CCUG 60099, CIP 110846

Section

Flavobacterium piscis 412-R09 is an aerobe, mesophilic, Gram-negative bacterium of the family Flavobacteriaceae.

Gram-negative
aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium piscis**
	Full Scientific Name (LPSN)	Flavobacterium piscis Zamora et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #36521]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.985

[Ref.: #36521]	Cell shape	rod-shaped

[Ref.: #36521]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36521]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #36521]

Culture medium growth

[Ref.: #36521]

Culture medium composition

expand / minimize

[Ref.: #36521]

Culture medium

CIP Medium 566

[Ref.: #36521]

Culture medium growth

[Ref.: #36521]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #36521]			growth	30 °C
[Ref.: #62198]			growth	30 °C

[Ref.: #36521]	Temperature range	mesophilic
[Ref.: #62198]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62198]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.989

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #62198]	Sample type/isolated from	Trout kidney
[Ref.: #62198]	Sampling date	2009-09-04
[Ref.: #62198]	Geographic location (country and/or sea, region)	Madrid
[Ref.: #62198]	Country	Spain
[Ref.: #62198]	Country ISO 3 Code	ESP
[Ref.: #62198]	Continent	Europe

[Ref.: #36521]	Sample type/isolated from	Trout, kidney
[Ref.: #36521]	Geographic location (country and/or sea, region)	Madrid
[Ref.: #36521]	Country	Spain
[Ref.: #36521]	Country ISO 3 Code	ESP
[Ref.: #36521]	Continent	Europe
[Ref.: #36521]	Isolation date	2009-09-04

[Ref.: #36521]	Geographic location (country and/or sea, region)	Madrid
[Ref.: #36521]	Country	Spain
[Ref.: #36521]	Country ISO 3 Code	ESP
[Ref.: #36521]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Urogenital tract	#Kidney
#Host	#Fishes	#Salmonidae

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #36521]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium piscis CCUG 60099	GCA_001686925	contig	GenBank	1114874 tax ID	*
[Ref.: #66792]	Flavobacterium piscis CCUG 60099	GCA_002222045	scaffold	GenBank	1114874 tax ID	*
[Ref.: #66792]	Flavobacterium piscis strain CCUG 60099	1114874.7	wgs	PATRIC	1114874 tax ID	*
[Ref.: #66792]	Flavobacterium piscis strain CCUG 60099	1114874.4	wgs	PATRIC	1114874 tax ID	*
[Ref.: #66792]	Flavobacterium piscis CCUG 60099	2751185903	draft	JGI IMG/M	1114874 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium piscis strain CCUG 60099 PATRIC: 1114874.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium piscis CCUG 60099 NCBI: GCA_002222045.1
[Ref.: #69480]	flagellated	no	93.345	no
[Ref.: #69480]	gram-positive	no	98.115	no
[Ref.: #69480]	anaerobic	no	99.594	no
[Ref.: #69480]	aerobic	yes	89.776	yes
[Ref.: #69480]	halophile	no	94.424	no
[Ref.: #69480]	spore-forming	no	93.804	no
[Ref.: #69480]	thermophile	no	99.804	yes
[Ref.: #69480]	glucose-util	yes	86.603	no
[Ref.: #69480]	motile	no	84.266	no
[Ref.: #69480]	glucose-ferment	no	88.448	no

Availability in culture collections External links

[Ref.: #36521]

Culture collection no.

CIP 110846, CCUG 60099, CECT 7911

[Ref.: #93880]

SI-ID 392248

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium tructae sp. nov. and Flavobacterium piscis sp. nov., isolated from farmed rainbow trout (Oncorhynchus mykiss).	Zamora L, Vela AI, Sanchez-Porro C, Palacios MA, Moore ERB, Dominguez L, Ventosa A, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.056341-0	2013	*
Phylogeny	Flavobacterium gilvum sp. nov., isolated from stream water.	Shin SK, Ha Y, Cho YJ, Kwon S, Yong D, Yi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.001594	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36521 Collection of Institut Pasteur ; Curators of the CIP; CIP 110846
#62198 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60099

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#93880

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID392248.1 )

* These data were automatically processed and therefore are not curated

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Flavobacterium piscis strain CCUG 60099

Flavobacterium piscis CCUG 60099

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