Shewanella oneidensis (CIP 106686, ATCC 700550, VKPM B-9861)

Name: Shewanella oneidensis (CIP 106686, ATCC 700550, VKPM B-9861)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 136795

Type strain

Strain Designation MR-1

Culture col. no. CIP 106686 ATCC 700550 VKPM B-9861 NCIMB 14063 LMG 19005 3 more

NCBI tax ID(s) 211586 70863

Special Collections JCM CIP

History JCM <-- LMG 19005 <-- ATCC 700550 <-- K. H. Nealson, MR-1. CIP <- 2000, ATCC <- K. Venkateswaran, Univ. Wisconsin-Milwaukee, USA: strain MR-1

Links

Shewanella oneidensis MR-1 is an obligate aerobe, Gram-negative, motile bacterium that was isolated from Sediment from Oneida Lake.

Gram-negative motile rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 12964

LMG 19005,ATCC 700550,JCM 31522,CIP 106686,BCRC 17276,CCRC 17276,NCIMB 14063

@ref 20215

Last LPSN update 2026-05-29 08:38:53

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella oneidensis

Full scientific name Shewanella oneidensis Venkateswaran et al. 1999

BacDive ID	Other strains from **Shewanella oneidensis** (1)	Type strain
173345	S. oneidensis CIMB 04-5664, CRBIP17.141

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
36439	negative	rod-shaped
125439	negative			99.504

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
36439	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
36439	CIP Medium 72			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
36439	positive	growth	30
36439	positive	growth	5-30
36439	negative	growth	37
36439	negative	growth	41
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

36439

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
36439
125439		99.946

Halophily

@ref	Salt	Growth	Tested relation	Concentration
36439	NaCl	positive	growth	0-2 %
36439	NaCl		growth	4 %
36439	NaCl		growth	6 %
36439	NaCl		growth	8 %
36439	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
36439	16947 ChEBI	citrate	-	carbon source
36439	4853 ChEBI	esculin	+	hydrolysis
36439	17632 ChEBI	nitrate	+	reduction
36439	17632 ChEBI	nitrate	+	respiration
36439	16301 ChEBI	nitrite	+	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
36439	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
36439	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
36439	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
36439	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
36439	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
36439	caseinase	+	3.4.21.50
36439	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
36439	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
36439	gelatinase	+
36439	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
36439	lipase	+
68382	lipase (C 14)	-		from API zym
36439	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
36439	ornithine decarboxylase	+	4.1.1.17
36439	oxidase	+
36439	protease	+
68382	trypsin	+	3.4.21.4	from API zym
36439	tryptophan deaminase	-
36439	tween esterase	+
36439	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	biotin biosynthesis	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	starch degradation	100	10 of 10
66794	glycogen metabolism	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	CMP-KDO biosynthesis	100	4 of 4
66794	threonine metabolism	100	10 of 10
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	butanoate fermentation	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	ceramide biosynthesis	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	aerobactin biosynthesis	100	1 of 1
66794	ubiquinone biosynthesis	100	7 of 7
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	heme metabolism	92.86	13 of 14
66794	photosynthesis	92.86	13 of 14
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	leucine metabolism	84.62	11 of 13
66794	pyrimidine metabolism	84.44	38 of 45
66794	vitamin B6 metabolism	81.82	9 of 11
66794	pentose phosphate pathway	81.82	9 of 11
66794	purine metabolism	80.85	76 of 94
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	hydrogen production	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	cellulose degradation	80	4 of 5
66794	alanine metabolism	79.31	23 of 29
66794	glutathione metabolism	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	phenylalanine metabolism	76.92	10 of 13
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	lipid metabolism	74.19	23 of 31
66794	flavin biosynthesis	73.33	11 of 15
66794	tyrosine metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	Entner Doudoroff pathway	70	7 of 10
66794	propionate fermentation	70	7 of 10
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	enterobactin biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	cysteine metabolism	66.67	12 of 18
66794	d-mannose degradation	66.67	6 of 9
66794	non-pathway related	65.79	25 of 38
66794	histidine metabolism	65.52	19 of 29
66794	methionine metabolism	65.38	17 of 26
66794	oxidative phosphorylation	64.84	59 of 91
66794	glycolysis	64.71	11 of 17
66794	proline metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	sulfate reduction	61.54	8 of 13
66794	tryptophan metabolism	60.53	23 of 38
66794	lipoate biosynthesis	60	3 of 5
66794	urea cycle	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	lysine metabolism	50	21 of 42
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	glycine metabolism	50	5 of 10
66794	ketogluconate metabolism	50	4 of 8
66794	polyamine pathway	47.83	11 of 23
66794	nitrate assimilation	44.44	4 of 9
66794	arachidonic acid metabolism	44.44	8 of 18
66794	glycine betaine biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	gallate degradation	40	2 of 5
66794	degradation of sugar alcohols	37.5	6 of 16
66794	vitamin B12 metabolism	35.29	12 of 34
66794	phenol degradation	35	7 of 20
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	ascorbate metabolism	27.27	6 of 22
66794	metabolism of disaccharids	27.27	3 of 11
66794	degradation of pentoses	25	7 of 28
66794	carnitine metabolism	25	2 of 8
66794	alginate biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	degradation of sugar acids	24	6 of 25
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	degradation of hexoses	22.22	4 of 18

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
36439	-	+	+	+	-	+	+	+	+	+	+	+	-	-	-	-	-	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
36439	not determinedn.d.	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	-	+	-	-	-	+	-	-	+	+	-	+	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
67770	Sediment from Oneida Lake		NY	USA	USA	North America
36439	Environment, Sediments	1987	Oneida Lake, NY	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AF005251 (>99% sequence identity) for Shewanella oneidensis from Microbeatlas

Aquatic Samples	93
Soil Samples	2
Animal Samples	118
Plant Samples	4
Total Samples	217

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
36439	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM14616v2 assembly for Shewanella oneidensis MR-1	complete	GCA_000146165	211586.12	637000258	211586	99.17
124043	ASM3384304v1 assembly for Shewanella oneidensis ATCC 700550	contig	GCA_033843045	70863.31		70863	79.25

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Shewanella oneidensis MR-1 16S ribosomal RNA gene, partial sequence	AF005251	1389		211586

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM14616v2 assembly for Shewanella oneidensis MR-1
NCBI: GCA_000146165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.85	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	spore_formation	BacteriaNetⓘ	no	99.95	no
125439	motility	BacteriaNetⓘ	yes	79.92	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	In Vivo Water Dynamics in Shewanella oneidensis Bacteria at High Pressure.	Foglia F, Hazael R, Meersman F, Wilding MC, Sakai VG, Rogers S, Bove LE, Koza MM, Moulin M, Haertlein M, Forsyth VT, McMillan PF.	Sci Rep	10.1038/s41598-019-44704-3	2019
Metabolism	Water Dynamics in Shewanella oneidensis at Ambient and High Pressure using Quasi-Elastic Neutron Scattering.	Foglia F, Hazael R, Simeoni GG, Appavou MS, Moulin M, Haertlein M, Trevor Forsyth V, Seydel T, Daniel I, Meersman F, McMillan PF.	Sci Rep	10.1038/srep18862	2016
	Laboratory investigation of high pressure survival in Shewanella oneidensis MR-1 into the gigapascal pressure range.	Hazael R, Foglia F, Kardzhaliyska L, Daniel I, Meersman F, McMillan P.	Front Microbiol	10.3389/fmicb.2014.00612	2014
Metabolism	Genome-wide expression links the electron transfer pathway of Shewanella oneidensis to chemotaxis.	Tai SK, Wu G, Yuan S, Li KC.	BMC Genomics	10.1186/1471-2164-11-319	2010
Genetics	Whole-Genome Sequencing Redefines Shewanella Taxonomy.	Thorell K, Meier-Kolthoff JP, Sjoling A, Martin-Rodriguez AJ.	Front Microbiol	10.3389/fmicb.2019.01861	2019
	Spectroscopic characterization of bacterial colonies through UV hyperspectral imaging techniques.	Ezenarro JJ, Al Ktash M, Vigues N, Gordi JM, Munoz-Berbel X, Brecht M.	Front Chem	10.3389/fchem.2025.1530955	2025
	Shewanella oneidensis and Methanosarcina barkerii augmentation and conductive material effects on long-term anaerobic digestion performance.	Perego C, Konig R, Cuomo M, Pianta E, Maye S, Di Maggio L, Moser M, Fischer F, Principi P.	Biotechnol Biofuels Bioprod	10.1186/s13068-025-02609-6	2025
Phylogeny	Biofilm Formation on Excavation Damaged Zone Fractures in Deep Neogene Sedimentary Rock.	Hirota A, Kouduka M, Fukuda A, Miyakawa K, Sakuma K, Ozaki Y, Ishii E, Suzuki Y.	Microb Ecol	10.1007/s00248-024-02451-7	2024
	Robust measurement of microbial reduction of graphene oxide nanoparticles using image analysis.	Bennett DT, Meyer AS.	Appl Environ Microbiol	10.1128/aem.00360-25	2025
	Insights into the biosynthesis of palladium nanoparticles for oxygen reduction reaction by genetically engineered bacteria of Shewanella oneidensis MR-1.	Li S, Huang J, Tong L, Li Q, Zhou H, Deng X, Zhou J, Xie Z, Liu X, Liang Y.	Microb Biotechnol	10.1111/1751-7915.14469	2024
	Biotransformation of Chlorpyrifos Shewanella oneidensis MR-1 in the Presence of Goethite: Experimental Optimization and Degradation Products.	Tang S, Li Y, Zhu Z, Wang Y, Peng Y, Zhang J, Nong P, Pan S, Fan Y, Zhu Y.	Toxics	10.3390/toxics12060402	2024
	Bio-electrosynthesis of polyhydroxybutyrate and surfactants in microbial fuel cells: a preliminary study.	Nastro RA, Kuppam C, Toscanesi M, Trifuoggi M, Pietrelli A, Pasquale V, Avignone-Rossa C.	Front Microbiol	10.3389/fmicb.2025.1372302	2025
	Expanded Diversity of Microbial Groups Capable of Anaerobic Pyrite Reduction and Assimilation of Dissolution Products.	Boyd ES, Payne D.	Environ Microbiol	10.1111/1462-2920.70125	2025
	Metabolic engineering of Shewanella oneidensis to produce glutamate and itaconic acid.	Wohlers H, Zentgraf L, van der Sande L, Holtmann D.	Appl Microbiol Biotechnol	10.1007/s00253-023-12879-5	2024
Pathogenicity	Subsurface Microbial Colonization at Mineral-Filled Veins in 2-Billion-Year-Old Mafic Rock from the Bushveld Igneous Complex, South Africa.	Suzuki Y, Webb SJ, Kouduka M, Kobayashi H, Castillo J, Kallmeyer J, Moganedi K, Allwright AJ, Klemd R, Roelofse F, Mapiloko M, Hill SJ, Ashwal LD, Trumbull RB.	Microb Ecol	10.1007/s00248-024-02434-8	2024
	Goethite Enhances Cr(VI) Reduction by S. oneidensis MR-1 under Different Conditions: Mechanistic Insights.	Hou Y, Li Y, Wang Y, Zhu Z, Tang S, Zhang J, Pan Q, Hu T.	Microorganisms	10.3390/microorganisms12040754	2024
	Enhanced 1,3-propanediol production with high yield from glycerol through a novel Klebsiella-Shewanella co-culture.	Wang Y, Wan Z, Zhu Y, Hu H, Jiang Y, Jiang W, Zhang W, Xin F.	Biotechnol Biofuels Bioprod	10.1186/s13068-023-02304-4	2023
	Inorganic Carbon Assimilation and Electrosynthesis of Platform Chemicals in Bioelectrochemical Systems (BESs) Inoculated with Clostridium saccharoperbutylacetonicum N1-H4.	Nastro RA, Salvian A, Kuppam C, Pasquale V, Pietrelli A, Rossa CA.	Microorganisms	10.3390/microorganisms11030735	2023
	Exposure of Shewanella oneidensis MR-1 to Sublethal Doses of Ionizing Radiation Triggers Short-Term SOS Activation and Longer-Term Prophage Activation.	Sweet P, Blacutt J, Gordon V, Contreras L.	Appl Environ Microbiol	10.1128/aem.01716-22	2023
	A novel bacterial sulfite dehydrogenase that requires three c-type cytochromes for electron transfer.	Sun W, Xu Y, Liang Y, Yu Q, Gao H.	Appl Environ Microbiol	10.1128/aem.01108-23	2023
Genetics	Genome-resolved metaproteogenomic and nanosolid characterization of an inactive vent chimney densely colonized by enigmatic DPANN archaea.	Takamiya H, Kouduka M, Kato S, Suga H, Oura M, Yokoyama T, Suzuki M, Mori M, Kanai A, Suzuki Y.	ISME J	10.1093/ismejo/wrae207	2024
	Pleiotropic Effects of Hfq on the Cytochrome c Content and Pyomelanin Production in Shewanella oneidensis.	Wang W, Liang Y, Liu L, Han S, Wu S, Gao H.	Appl Environ Microbiol	10.1128/aem.01289-22	2022
	Electrochemical Microwell Plate to Study Electroactive Microorganisms in Parallel and Real-Time.	Kuchenbuch A, Frank R, Ramos JV, Jahnke HG, Harnisch F.	Front Bioeng Biotechnol	10.3389/fbioe.2021.821734	2021
	Shewanella oneidensis arcA Mutation Impairs Aerobic Growth Mainly by Compromising Translation.	Xie P, Wang J, Liang H, Gao H.	Life (Basel)	10.3390/life11090926	2021
	A Common Target of Nitrite and Nitric Oxide for Respiration Inhibition in Bacteria.	Wang W, Wang J, Feng X, Gao H.	Int J Mol Sci	10.3390/ijms232213841	2022
	Evolving Populations in Biofilms Contain More Persistent Plasmids.	Stalder T, Cornwell B, Lacroix J, Kohler B, Dixon S, Yano H, Kerr B, Forney LJ, Top EM.	Mol Biol Evol	10.1093/molbev/msaa024	2020
	The role of chemotaxis and efflux pumps on nitrate reduction in the toxic regions of a ciprofloxacin concentration gradient.	Alcalde RE, Dundas CM, Dong Y, Sanford RA, Keitz BK, Fouke BW, Werth CJ.	ISME J	10.1038/s41396-021-00975-1	2021
	The Crystal Structure of a Biological Insulated Transmembrane Molecular Wire.	Edwards MJ, White GF, Butt JN, Richardson DJ, Clarke TA.	Cell	10.1016/j.cell.2020.03.032	2020
	Different outer membrane c-type cytochromes are involved in direct interspecies electron transfer to Geobacter or Methanosarcina species.	Holmes DE, Zhou J, Smith JA, Wang C, Liu X, Lovley DR.	mLife	10.1002/mlf2.12037	2022
	Mediation of Extracellular Polymeric Substances in Microbial Reduction of Hematite by Shewanella oneidensis MR-1.	Gao L, Lu X, Liu H, Li J, Li W, Song R, Wang R, Zhang D, Zhu J.	Front Microbiol	10.3389/fmicb.2019.00575	2019
	Long-Term Behavior of Defined Mixed Cultures of Geobacter sulfurreducens and Shewanella oneidensis in Bioelectrochemical Systems.	Engel C, Schattenberg F, Dohnt K, Schroder U, Muller S, Krull R.	Front Bioeng Biotechnol	10.3389/fbioe.2019.00060	2019
Metabolism	Distinct Roles of Shewanella oneidensis Thioredoxin in Regulation of Cellular Responses to Hydrogen and Organic Peroxides.	Feng X, Sun W, Kong L, Gao H.	Appl Environ Microbiol	10.1128/aem.01700-19	2019
	3D-printed cellular tips for tuning fork atomic force microscopy in shear mode.	Sun L, Gu H, Liu X, Ni H, Li Q, Zeng Y, Chang N, Zhang D, Chen H, Li Z, Zhao X, Gu Z.	Nat Commun	10.1038/s41467-020-19536-9	2020
Enzymology	Extraction of Au(III) by Microbially Reduced Metal-Organic Frameworks.	Springthorpe SK, Keitz BK.	Langmuir	10.1021/acs.langmuir.1c01180	2021
Metabolism	Plasticity of the peroxidase AhpC links multiple substrates to diverse disulfide-reducing pathways in Shewanella oneidensis.	Feng X, Guo K, Gao H.	J Biol Chem	10.1074/jbc.ra120.014010	2020
	Engineering Shewanella oneidensis enables xylose-fed microbial fuel cell.	Li F, Li Y, Sun L, Li X, Yin C, An X, Chen X, Tian Y, Song H.	Biotechnol Biofuels	10.1186/s13068-017-0881-2	2017
	Enhanced removal of chromium(vi) by Fe(iii)-reducing bacterium coated ZVI for wastewater treatment: batch and column experiments.	Zheng B, Ye Y, Hu B, Luo C, Zhu Y.	RSC Adv	10.1039/c9ra06516d	2019
	Free Rather Than Total Iron Content Is Critically Linked to the Fur Physiology in Shewanella oneidensis.	Liu L, Feng X, Wang W, Chen Y, Chen Z, Gao H.	Front Microbiol	10.3389/fmicb.2020.593246	2020
Metabolism	Activation of an Otherwise Silent Xylose Metabolic Pathway in Shewanella oneidensis.	Sekar R, Shin HD, DiChristina TJ.	Appl Environ Microbiol	10.1128/aem.00881-16	2016
	Deletion of Lytic Transglycosylases Increases Beta-Lactam Resistance in Shewanella oneidensis.	Yin J, Sun Y, Sun Y, Yu Z, Qiu J, Gao H.	Front Microbiol	10.3389/fmicb.2018.00013	2018
Metabolism	Distinct Nitrite and Nitric Oxide Physiologies in Escherichia coli and Shewanella oneidensis.	Meng Q, Yin J, Jin M, Gao H.	Appl Environ Microbiol	10.1128/aem.00559-18	2018
Enzymology	Promiscuous Enzymes Cause Biosynthesis of Diverse Siderophores in Shewanella oneidensis.	Wang S, Liang H, Liu L, Jiang X, Wu S, Gao H.	Appl Environ Microbiol	10.1128/aem.00030-20	2020
Metabolism	NapB Restores cytochrome c biosynthesis in bacterial dsbD-deficient mutants.	Guo K, Feng X, Sun W, Han S, Wu S, Gao H.	Commun Biol	10.1038/s42003-022-03034-3	2022
	Transcriptome analysis reveals a stress response of Shewanella oneidensis deprived of background levels of ionizing radiation.	Castillo H, Li X, Schilkey F, Smith GB.	PLoS One	10.1371/journal.pone.0196472	2018
Metabolism	Structures of KdnB and KdnA from Shewanella oneidensis: Key Enzymes in the Formation of 8-Amino-3,8-Dideoxy-d-Manno-Octulosonic Acid.	Zachman-Brockmeyer TR, Thoden JB, Holden HM.	Biochemistry	10.1021/acs.biochem.6b00439	2016
	Boosting Power Density of Microbial Fuel Cells with 3D Nitrogen-Doped Graphene Aerogel Electrode.	Yang Y, Liu T, Zhu X, Zhang F, Ye D, Liao Q, Li Y.	Adv Sci (Weinh)	10.1002/advs.201600097	2016
Pathogenicity	Emerging patterns of plasmid-host coevolution that stabilize antibiotic resistance.	Stalder T, Rogers LM, Renfrow C, Yano H, Smith Z, Top EM.	Sci Rep	10.1038/s41598-017-04662-0	2017
	Bacteriogenic Platinum Nanoparticles for Application in Nanomedicine.	Bloch K, Pardesi K, Satriano C, Ghosh S.	Front Chem	10.3389/fchem.2021.624344	2021
	Electrochemical Polymerization of Hydroquinone on Graphite Felt as a Pseudocapacitive Material for Application in a Microbial Fuel Cell.	Wang G, Feng C.	Polymers (Basel)	10.3390/polym9060220	2017
Metabolism	An extracytoplasmic function sigma factor-dependent periplasmic glutathione peroxidase is involved in oxidative stress response of Shewanella oneidensis.	Dai J, Wei H, Tian C, Damron FH, Zhou J, Qiu D.	BMC Microbiol	10.1186/s12866-015-0357-0	2015
	Suppression of fabB Mutation by fabF1 Is Mediated by Transcription Read-through in Shewanella oneidensis.	Li M, Meng Q, Fu H, Luo Q, Gao H.	J Bacteriol	10.1128/jb.00463-16	2016
Metabolism	Positive regulation of the Shewanella oneidensis OmpS38, a major porin facilitating anaerobic respiration, by Crp and Fur.	Gao T, Ju L, Yin J, Gao H.	Sci Rep	10.1038/srep14263	2015
	Conservation of transcription start sites within genes across a bacterial genus.	Shao W, Price MN, Deutschbauer AM, Romine MF, Arkin AP.	mBio	10.1128/mbio.01398-14	2014
	Cold adaptation regulated by cryptic prophage excision in Shewanella oneidensis.	Zeng Z, Liu X, Yao J, Guo Y, Li B, Li Y, Jiao N, Wang X.	ISME J	10.1038/ismej.2016.85	2016
Metabolism	Regulation of nitrite resistance of the cytochrome cbb3 oxidase by cytochrome c ScyA in Shewanella oneidensis.	Yin J, Jin M, Zhang H, Ju L, Zhang L, Gao H.	Microbiologyopen	10.1002/mbo3.224	2015
Metabolism	Development of a longevous two-species biophotovoltaics with constrained electron flow.	Zhu H, Meng H, Zhang W, Gao H, Zhou J, Zhang Y, Li Y.	Nat Commun	10.1038/s41467-019-12190-w	2019
Pathogenicity	A Matter of Timing: Contrasting Effects of Hydrogen Sulfide on Oxidative Stress Response in Shewanella oneidensis.	Wu G, Wan F, Fu H, Li N, Gao H.	J Bacteriol	10.1128/jb.00603-15	2015
Metabolism	Relating Carbon and Nitrogen Isotope Effects to Reaction Mechanisms during Aerobic or Anaerobic Degradation of RDX (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine) by Pure Bacterial Cultures.	Fuller ME, Heraty L, Condee CW, Vainberg S, Sturchio NC, Bohlke JK, Hatzinger PB.	Appl Environ Microbiol	10.1128/aem.00073-16	2016
	Endogenous generation of hydrogen sulfide and its regulation in Shewanella oneidensis.	Wu G, Li N, Mao Y, Zhou G, Gao H.	Front Microbiol	10.3389/fmicb.2015.00374	2015
	Three-dimensional graphene/Pt nanoparticle composites as freestanding anode for enhancing performance of microbial fuel cells.	Zhao S, Li Y, Yin H, Liu Z, Luan E, Zhao F, Tang Z, Liu S.	Sci Adv	10.1126/sciadv.1500372	2015
Pathogenicity	Impaired cell envelope resulting from arcA mutation largely accounts for enhanced sensitivity to hydrogen peroxide in Shewanella oneidensis.	Wan F, Mao Y, Dong Y, Ju L, Wu G, Gao H.	Sci Rep	10.1038/srep10228	2015
Transcriptome	Transcriptome analysis applied to survival of Shewanella oneidensis MR-1 exposed to ionizing radiation.	Qiu X, Daly MJ, Vasilenko A, Omelchenko MV, Gaidamakova EK, Wu L, Zhou J, Sundin GW, Tiedje JM.	J Bacteriol	10.1128/jb.188.3.1199-1204.2006	2006
Metabolism	Shewanella oneidensis FabB: A beta-ketoacyl-ACP Synthase That Works with C16:1-ACP.	Luo Q, Li M, Fu H, Meng Q, Gao H.	Front Microbiol	10.3389/fmicb.2016.00327	2016
	Oxidized OxyR Up-Regulates ahpCF Expression to Suppress Plating Defects of oxyR- and Catalase-Deficient Strains.	Wan F, Yin J, Sun W, Gao H.	Front Microbiol	10.3389/fmicb.2019.00439	2019
Metabolism	SO2907, a putative TonB-dependent receptor, is involved in dissimilatory iron reduction by Shewanella oneidensis strain MR-1.	Qian Y, Shi L, Tien M.	J Biol Chem	10.1074/jbc.m111.262113	2011
	Effects of ISSo2 insertions in structural and regulatory genes of the trimethylamine oxide reductase of Shewanella oneidensis.	Bordi C, Iobbi-Nivol C, Mejean V, Patte JC.	J Bacteriol	10.1128/jb.185.6.2042-2045.2003	2003
	Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis.	Beg QK, Zampieri M, Klitgord N, Collins SB, Altafini C, Serres MH, Segre D.	Nucleic Acids Res	10.1093/nar/gks467	2012
	Chemotactic responses to metals and anaerobic electron acceptors in Shewanella oneidensis MR-1.	Bencharit S, Ward MJ.	J Bacteriol	10.1128/jb.187.14.5049-5053.2005	2005
Metabolism	Protection from oxidative stress relies mainly on derepression of OxyR-dependent KatB and Dps in Shewanella oneidensis.	Jiang Y, Dong Y, Luo Q, Li N, Wu G, Gao H.	J Bacteriol	10.1128/jb.01077-13	2014
	Low-temperature growth of Shewanella oneidensis MR-1.	Abboud R, Popa R, Souza-Egipsy V, Giometti CS, Tollaksen S, Mosher JJ, Findlay RH, Nealson KH.	Appl Environ Microbiol	10.1128/aem.71.2.811-816.2005	2005
Metabolism	Release of arsenic from soil by a novel dissimilatory arsenate-reducing bacterium, Anaeromyxobacter sp. strain PSR-1.	Kudo K, Yamaguchi N, Makino T, Ohtsuka T, Kimura K, Dong DT, Amachi S.	Appl Environ Microbiol	10.1128/aem.00693-13	2013
Metabolism	Genetic and molecular characterization of flagellar assembly in Shewanella oneidensis.	Wu L, Wang J, Tang P, Chen H, Gao H.	PLoS One	10.1371/journal.pone.0021479	2011
	Transcription factors FabR and FadR regulate both aerobic and anaerobic pathways for unsaturated fatty acid biosynthesis in Shewanella oneidensis.	Luo Q, Shi M, Ren Y, Gao H.	Front Microbiol	10.3389/fmicb.2014.00736	2014
	Microbial reduction of Fe(III)-bearing clay minerals in the presence of humic acids.	Liu G, Qiu S, Liu B, Pu Y, Gao Z, Wang J, Jin R, Zhou J.	Sci Rep	10.1038/srep45354	2017
Metabolism	Nitrite modulates aminoglycoside tolerance by inhibiting cytochrome heme-copper oxidase in bacteria.	Zhang Y, Guo K, Meng Q, Gao H.	Commun Biol	10.1038/s42003-020-0991-4	2020
	Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons.	Wetmore KM, Price MN, Waters RJ, Lamson JS, He J, Hoover CA, Blow MJ, Bristow J, Butland G, Arkin AP, Deutschbauer A.	mBio	10.1128/mbio.00306-15	2015
Metabolism	Physiological roles of ArcA, Crp, and EtrA and their interactive control on aerobic and anaerobic respiration in Shewanella oneidensis.	Gao H, Wang X, Yang ZK, Chen J, Liang Y, Chen H, Palzkill T, Zhou J.	PLoS One	10.1371/journal.pone.0015295	2010
Metabolism	Anaerobic central metabolic pathways in Shewanella oneidensis MR-1 reinterpreted in the light of isotopic metabolite labeling.	Tang YJ, Meadows AL, Kirby J, Keasling JD.	J Bacteriol	10.1128/jb.00926-06	2007
	The role of clonal interference in the evolutionary dynamics of plasmid-host adaptation.	Hughes JM, Lohman BK, Deckert GE, Nichols EP, Settles M, Abdo Z, Top EM.	mBio	10.1128/mbio.00077-12	2012
Metabolism	In vivo identification of the outer membrane protein OmcA-MtrC interaction network in Shewanella oneidensis MR-1 cells using novel hydrophobic chemical cross-linkers.	Zhang H, Tang X, Munske GR, Zakharova N, Yang L, Zheng C, Wolff MA, Tolic N, Anderson GA, Shi L, Marshall MJ, Fredrickson JK, Bruce JE.	J Proteome Res	10.1021/pr7007658	2008
Enzymology	Kinetic characterization of OmcA and MtrC, terminal reductases involved in respiratory electron transfer for dissimilatory iron reduction in Shewanella oneidensis MR-1.	Ross DE, Brantley SL, Tien M.	Appl Environ Microbiol	10.1128/aem.00544-09	2009
	Pellicle formation in Shewanella oneidensis.	Liang Y, Gao H, Chen J, Dong Y, Wu L, He Z, Liu X, Qiu G, Zhou J.	BMC Microbiol	10.1186/1471-2180-10-291	2010
Metabolism	The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression.	Elias DA, Tollaksen SL, Kennedy DW, Mottaz HM, Giometti CS, McLean JS, Hill EA, Pinchuk GE, Lipton MS, Fredrickson JK, Gorby YA.	Arch Microbiol	10.1007/s00203-007-0321-y	2008
Metabolism	Characterization of protein-protein interactions involved in iron reduction by Shewanella oneidensis MR-1.	Ross DE, Ruebush SS, Brantley SL, Hartshorne RS, Clarke TA, Richardson DJ, Tien M.	Appl Environ Microbiol	10.1128/aem.00146-07	2007
Metabolism	Towards an informative mutant phenotype for every bacterial gene.	Deutschbauer A, Price MN, Wetmore KM, Tarjan DR, Xu Z, Shao W, Leon D, Arkin AP, Skerker JM.	J Bacteriol	10.1128/jb.01836-14	2014
	Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics.	Price MN, Zane GM, Kuehl JV, Melnyk RA, Wall JD, Deutschbauer AM, Arkin AP.	PLoS Genet	10.1371/journal.pgen.1007147	2018
Metabolism	Transcriptome analysis reveals response regulator SO2426-mediated gene expression in Shewanella oneidensis MR-1 under chromate challenge.	Chourey K, Wei W, Wan XF, Thompson DK.	BMC Genomics	10.1186/1471-2164-9-395	2008
Metabolism	Reduction of soluble and insoluble iron forms by membrane fractions of Shewanella oneidensis grown under aerobic and anaerobic conditions.	Ruebush SS, Brantley SL, Tien M.	Appl Environ Microbiol	10.1128/aem.72.4.2925-2935.2006	2006
	Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations.	Kolker E, Picone AF, Galperin MY, Romine MF, Higdon R, Makarova KS, Kolker N, Anderson GA, Qiu X, Auberry KJ, Babnigg G, Beliaev AS, Edlefsen P, Elias DA, Gorby YA, Holzman T, Klappenbach JA, Konstantinidis KT, Land ML, Lipton MS, McCue LA, Monroe M, Pasa-Tolic L, Pinchuk G, Purvine S, Serres MH, Tsapin S, Zakrajsek BA, Zhu W, Zhou J, Larimer FW, Lawrence CE, Riley M, Collart FR, Yates JR, Smith RD, Giometti CS, Nealson KH, Fredrickson JK, Tiedje JM.	Proc Natl Acad Sci U S A	10.1073/pnas.0409111102	2005
	Profiling the membrane proteome of Shewanella oneidensis MR-1 with new affinity labeling probes.	Tang X, Yi W, Munske GR, Adhikari DP, Zakharova NL, Bruce JE.	J Proteome Res	10.1021/pr060480e	2007
Enzymology	Reconstitution of the trimethylamine oxide reductase regulatory elements of Shewanella oneidensis in Escherichia coli.	Gon S, Patte JC, Dos Santos JP, Mejean V.	J Bacteriol	10.1128/jb.184.5.1262-1269.2002	2002
	Indirect and suboptimal control of gene expression is widespread in bacteria.	Price MN, Deutschbauer AM, Skerker JM, Wetmore KM, Ruths T, Mar JS, Kuehl JV, Shao W, Arkin AP.	Mol Syst Biol	10.1038/msb.2013.16	2013
Phylogeny	DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes.	Murray AE, Lies D, Li G, Nealson K, Zhou J, Tiedje JM.	Proc Natl Acad Sci U S A	10.1073/pnas.171178898	2001
	Characterization of the lipopolysaccharides and capsules of Shewanella spp.	Korenevsky AA, Vinogradov E, Gorby Y, Beveridge TJ.	Appl Environ Microbiol	10.1128/aem.68.9.4653-4657.2002	2002
Phylogeny	Environmental whole-genome amplification to access microbial populations in contaminated sediments.	Abulencia CB, Wyborski DL, Garcia JA, Podar M, Chen W, Chang SH, Chang HW, Watson D, Brodie EL, Hazen TC, Keller M.	Appl Environ Microbiol	10.1128/aem.72.5.3291-3301.2006	2006
Enzymology	Pseudomonas stutzeri nitrite reductase gene abundance in environmental samples measured by real-time PCR.	Gruntzig V, Nold SC, Zhou J, Tiedje JM.	Appl Environ Microbiol	10.1128/aem.67.2.760-768.2001	2001
Metabolism	Suspension array analysis of 16S rRNA from Fe- and SO(4)2- reducing bacteria in uranium-contaminated sediments undergoing bioremediation.	Chandler DP, Jarrell AE, Roden ER, Golova J, Chernov B, Schipma MJ, Peacock AD, Long PE.	Appl Environ Microbiol	10.1128/aem.02858-05	2006
Metabolism	Integrase-directed recovery of functional genes from genomic libraries.	Rowe-Magnus DA.	Nucleic Acids Res	10.1093/nar/gkp561	2009
Metabolism	Shewanella spp. genomic evolution for a cold marine lifestyle and in-situ explosive biodegradation.	Zhao JS, Deng Y, Manno D, Hawari J.	PLoS One	10.1371/journal.pone.0009109	2010
Metabolism	Protein oxidation implicated as the primary determinant of bacterial radioresistance.	Daly MJ, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Leapman RD, Lai B, Ravel B, Li SM, Kemner KM, Fredrickson JK.	PLoS Biol	10.1371/journal.pbio.0050092	2007
	Combined Gold Recovery and Nanoparticle Synthesis in Microbial Systems Using Fractional Factorial Design.	Mosquera-Romero S, Anaya-Garzon J, Garcia-Timermans C, Van Dorpe J, Hoorens A, Commenges-Bernole N, Verbeken K, Rabaey K, Varia J.	Nanomaterials (Basel)	10.3390/nano13010083	2022
	Enhanced detoxification of Cr⁶⁺ by Shewanella oneidensis via adsorption on spherical and flower-like manganese ferrite nanostructures.	Raie DS, Tsonas I, Canales M, Mourdikoudis S, Simeonidis K, Makridis A, Karfaridis D, Ali S, Vourlias G, Wilson P, Bozec L, Ciric L, Kim Thanh NT.	Nanoscale Adv	10.1039/d2na00691j	2023
	Biological Recovery of Platinum Complexes from Diluted Aqueous Streams by Axenic Cultures.	Maes S, Props R, Fitts JP, De Smet R, Vanhaecke F, Boon N, Hennebel T.	PLoS One	10.1371/journal.pone.0169093	2017
Metabolism	Respiration and growth of Shewanella oneidensis MR-1 using vanadate as the sole electron acceptor.	Carpentier W, De Smet L, Van Beeumen J, Brige A.	J Bacteriol	10.1128/jb.187.10.3293-3301.2005	2005
	Flow Cytometric Single-Cell Identification of Populations in Synthetic Bacterial Communities.	Rubbens P, Props R, Boon N, Waegeman W.	PLoS One	10.1371/journal.pone.0169754	2017
Enzymology	Comparative characterization and expression analysis of the four Old Yellow Enzyme homologues from Shewanella oneidensis indicate differences in physiological function.	Brige A, Van den Hemel D, Carpentier W, De Smet L, Van Beeumen JJ.	Biochem J	10.1042/bj20050979	2006
Phylogeny	Phylogeny and genomic analysis of Shewanella cutis sp. nov., isolated from freshwater pufferfish.	Das L, Kujur RRA, Debnath T, Das SK.	Folia Microbiol (Praha)	10.1007/s12223-023-01111-6	2024

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36439	Collection of Institut Pasteur ; Curators of the CIP; CIP 106686
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella oneidensis (CIP 106686, ATCC 700550, VKPM B-9861)

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Oxygen tolerance

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Genome browser: GCA_000146165

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