Marinovum algicola (DSM 10251, ATCC 51440, FF3)

Name: Marinovum algicola (DSM 10251, ATCC 51440, FF3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13679

Type strain

Strain Designation FF3

Culture col. no. DSM 10251 ATCC 51440 FF3 NBRC 16653 IFO 16653 4 more

NCBI tax ID(s) 42444

Special Collections DSMZ JCM CIP

History DSMZ <- ATCC <- M. J. Gauthier, FF3 <- C. Rausch de Traubenberg JCM <-- IAM 14591 <-- ATCC 51440 <-- M. J. Gauthier FF3 <-- C. Rausch de Traubenberg. CIP <- 1994, M. Gauthier, INSERM, Nice, France <- ATCC <- C. Rausch de Traubenberg, IFREMER, Brest, France <- IFREMER, Nantes, France: strain FF3

Links

Marinovum algicola FF3 is a Gram-negative, motile, rod-shaped bacterium that was isolated from surface of marine dinoflagellate .

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 14988

LMG 19753,ATCC 51440,DSM 10251,IAM 14591,CIP 104267,NCIMB 13698,IFO 16653,CECT 5396,NBRC 16653,JCM 21266,KCTC 22095

@ref 20215

Last LPSN update 2026-05-29 08:28:06

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Marinovum

Species Marinovum algicola

Full scientific name Marinovum algicola (Lafay et al. 1995) Martens et al. 2006

Synonyms (2)

Roseobacter algicola
Ruegeria algicola

BacDive ID	Other strains from **Marinovum algicola** (3)	Type strain
13680	M. algicola ML4, DSM 10252, ATCC 51441
13681	M. algicola FF3, DSM 10253, ATCC 51442
130611	M. algicola DG898, DSM 27768

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		95.4
125438	negative		98.5
116226	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3871	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
35644	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
116226	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
3871	positive	growth	28
35644	positive	growth	22
67770	positive	growth	25
116226	positive	growth	10-37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.198

Spore formation

@ref	Spore formation	Confidence
125439		99.229

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
116226	17632 ChEBI	nitrate	+	reduction
116226	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116226	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
116226	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
116226	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116226	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
116226	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
116226	ornithine decarboxylase	-	4.1.1.17
116226	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
116226	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116226	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116226	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Host	#Protozoa	#Dinoflagellate

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
3871	surface of marine dinoflagellate (Prorocentrum lima)	Prorocentrum lima		Spain	ESP	Europe
67770	Stationary culture of the toxin-producing marine dinoflagellate Prorocentrum lima PL2V	Prorocentrum lima	Instituto Espanol de Oceanographia, Vigo	Spain	ESP	Europe
116226	Laboratory culture of Prorocentrum lima		Nantes	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence X78315 (>99% sequence identity) for Marinovum algicola from Microbeatlas

Aquatic Samples	785
Soil Samples	24
Animal Samples	114
Plant Samples	4
Total Samples	927

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3871	1	Risk group (German classification) According to TRBA 466
116226	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	M.algicola_CECT5396_Spades_Prokka assembly for Marinovum algicola CECT 5396	contig	GCA_900172245	42444.5	2833233958	42444	66.31
66792	IMG-taxon 2615840718 annotated assembly for Marinovum algicola FF3	scaffold	GCA_900109145	42444.9	2615840718	42444	66.28

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	R.algocolus (ATCC 51440 T-FF3) gene for 16S ribosomal RNA	X78315	1348	42444
20218	Roseobacter algicola 16S rRNA gene, 23S rRNA gene and internal transcribed spacer (ITS), strain DSM 10251	AJ012705	1158	42444
20218	Marinovum algicola gene for 16S ribosomal RNA, partial sequence	AB289592	1389	42444
20218	Marinovum algicola strain NBRC16653 16S ribosomal RNA gene, partial sequence	DQ915612	1307	42444

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: M.algicola_CECT5396_Spades_Prokka assembly for Marinovum algicola CECT 5396
BV-BRC: 42444.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.20	no
125439	motility	BacteriaNetⓘ	yes	66.46	no
125439	gram_stain	BacteriaNetⓘ	negative	95.40	no
125439	spore_formation	BacteriaNetⓘ	no	99.23	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinovum algicola strain CECT 5396
PATRIC: 42444.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	91.17	no
125438	spore-forming	spore-formingⓘ	no	85.89	no
125438	aerobic	aerobicⓘ	yes	73.92	no
125438	thermophilic	thermophileⓘ	no	94.55	no
125438	flagellated	motile2+ⓘ	no	54.78	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Vitamin B₁₂ is not shared by all marine prototrophic bacteria with their environment.	Sultana S, Bruns S, Wilkes H, Simon M, Wienhausen G.	ISME J	10.1038/s41396-023-01391-3	2023
Phylogeny	Superior Resolution Profiling of the Coleofasciculus Microbiome by Amplicon Sequencing of the Complete 16S rRNA Gene and ITS Region.	Marter P, Freese HM, Ringel V, Brinkmann H, Pradella S, Rohde M, Jarek M, Sproer C, Wagner-Dobler I, Overmann J, Bunk B, Petersen J.	Environ Microbiol Rep	10.1111/1758-2229.70066	2025
Phylogeny	Seohaeicola saemankumensis gen. nov., sp. nov., isolated from a tidal flat.	Yoon JH, Kang SJ, Lee SY, Oh KH, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.011312-0	2009

References

#3871	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10251
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#35644	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116226	Collection of Institut Pasteur ; Curators of the CIP; CIP 104267
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Marinovum algicola (DSM 10251, ATCC 51440, FF3)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900172245

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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