Acinetobacter gyllenbergii (CIP 110451, NIPH 230, CCUG 56138)

Name: Acinetobacter gyllenbergii (CIP 110451, NIPH 230, CCUG 56138)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 136752

Type strain

Culture col. no. CIP 110451 NIPH 230 CCUG 56138

NCBI tax ID(s) 1217658 134534

Special Collections CCUG CIP

History CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 230 CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 230

Links

Acinetobacter gyllenbergii CIP 110451 is an aerobe, Gram-negative, oval-shaped bacterium of the family Moraxellaceae.

Gram-negative oval-shaped aerobe genome sequence Bacteria

Name and taxonomic classification

SI-ID 412201

CCUG 56138

@ref 20215

Last LPSN update 2026-05-29 08:38:52

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Acinetobacter

Species Acinetobacter gyllenbergii

Full scientific name Acinetobacter gyllenbergii Nemec et al. 2009

BacDive ID	Other strains from **Acinetobacter gyllenbergii** (3)	Type strain
8142	A. gyllenbergii 1271, DSM 22705, CCM 7267, CCUG 51248, NIPH ... (type strain)
155027	A. gyllenbergii CCUG 56140
155226	A. gyllenbergii CCUG 56995

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
36294	negative	oval-shaped
125438	negative			99

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
36294	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
36294	CIP Medium 72			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
36294	positive	growth	30
60874	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
60874	aerobe
125439	obligate aerobe	95.437

Spore formation

@ref	Spore formation	Confidence
125438		93.698
125439		97.87

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	+	3.4.11.3	from API zym
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	+		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
60874	-	-	+	+	+	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
60874	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	+	+	+	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Urogenital tract	#Vagina
#Host	#Human	#Female

Isolation

@ref	Sample type	Host species	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
36294				Praha	Czech Republic	CZE	Europe
60874	Human vagina	Homo sapiens	1994	Prague	Czech Republic	CZE	Europe
36294	Human, Vagina	Homo sapiens		Prague	Czech Republic	CZE	Europe	1994

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
36294	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Acin_gyll_NIPH_230_V1 assembly for Acinetobacter gyllenbergii NIPH 230	scaffold	GCA_000488195	1217658.3	2565956703	1217658	38.69

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acin_gyll_NIPH_230_V1 assembly for Acinetobacter gyllenbergii NIPH 230
NCBI: GCA_000488195

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.44	no
125439	gram_stain	BacteriaNetⓘ	negative	75.81	no
125439	motility	BacteriaNetⓘ	yes	42.89	no
125439	spore_formation	BacteriaNetⓘ	no	97.87	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acinetobacter gyllenbergii NIPH 230 NIPH 230
NCBI: GCA_000488195.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	97.08	yes
125438	aerobic	aerobicⓘ	yes	88.27	yes
125438	spore-forming	spore-formingⓘ	no	93.70	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	no	73.12	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Origin in Acinetobacter gyllenbergii and dissemination of aminoglycoside-modifying enzyme AAC(6')-Ih.	Yoon EJ, Goussard S, Nemec A, Lambert T, Courvalin P, Grillot-Courvalin C.	J Antimicrob Chemother	10.1093/jac/dkv390	2016
	A new subclass of intrinsic aminoglycoside nucleotidyltransferases, ANT(3")-II, is horizontally transferred among Acinetobacter spp. by homologous recombination.	Zhang G, Leclercq SO, Tian J, Wang C, Yahara K, Ai G, Liu S, Feng J.	PLoS Genet	10.1371/journal.pgen.1006602	2017
Enzymology	CRISPR-cas subtype I-Fb in Acinetobacter baumannii: evolution and utilization for strain subtyping.	Karah N, Samuelsen O, Zarrilli R, Sahl JW, Wai SN, Uhlin BE.	PLoS One	10.1371/journal.pone.0118205	2015
Pathogenicity	Bioinformatic Analysis of the Type VI Secretion System and Its Potential Toxins in the Acinetobacter Genus.	Repizo GD, Espariz M, Seravalle JL, Salcedo SP.	Front Microbiol	10.3389/fmicb.2019.02519	2019
	Metagenomic deep sequencing reveals association of microbiome signature with functional biases in bovine mastitis.	Hoque MN, Istiaq A, Clement RA, Sultana M, Crandall KA, Siddiki AZ, Hossain MA.	Sci Rep	10.1038/s41598-019-49468-4	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36294	Collection of Institut Pasteur ; Curators of the CIP; CIP 110451
#60874	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56138
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Acinetobacter gyllenbergii (CIP 110451, NIPH 230, CCUG 56138)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000488195

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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