Mycobacterium wolinskyi TBC 8878 is a microaerophile, rod-shaped bacterium of the family Mycobacteriaceae.
rod-shaped microaerophile genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Mycobacteriaceae |
| Genus Mycobacterium |
| Species Mycobacterium wolinskyi |
| Full scientific name Mycobacterium wolinskyi Brown et al. 1999 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 64151 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | Medium recipe at MediaDive | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water | ||
| 36249 | MEDIUM 55 - for Mycobacterium | ||||
| 123956 | CIP Medium 55 | Medium recipe at CIP |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 123956 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 123956 | amylase | - | ||
| 123956 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 123956 | caseinase | - | 3.4.21.50 | |
| 123956 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 123956 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 123956 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 123956 | gelatinase | - | ||
| 123956 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 123956 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 123956 | oxidase | - | ||
| 123956 | protease | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 123956 | tween esterase | - | ||
| 123956 | urease | + | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | butanoate fermentation | 100 | 4 of 4 | ||
| 66794 | resorcinol degradation | 100 | 2 of 2 | ||
| 66794 | valine metabolism | 100 | 9 of 9 | ||
| 66794 | phenol degradation | 100 | 20 of 20 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 100 | 12 of 12 | ||
| 66794 | phenylmercury acetate degradation | 100 | 2 of 2 | ||
| 66794 | 3-chlorocatechol degradation | 100 | 5 of 5 | ||
| 66794 | starch degradation | 100 | 10 of 10 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | L-lactaldehyde degradation | 100 | 3 of 3 | ||
| 66794 | molybdenum cofactor biosynthesis | 100 | 9 of 9 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | enterobactin biosynthesis | 100 | 3 of 3 | ||
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | ||
| 66794 | taurine degradation | 100 | 1 of 1 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | glycolate and glyoxylate degradation | 100 | 6 of 6 | ||
| 66794 | ethylmalonyl-CoA pathway | 100 | 5 of 5 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | cardiolipin biosynthesis | 100 | 7 of 7 | ||
| 66794 | threonine metabolism | 100 | 10 of 10 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | octane oxidation | 100 | 3 of 3 | ||
| 66794 | gallate degradation | 100 | 5 of 5 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | cyanate degradation | 100 | 3 of 3 | ||
| 66794 | NAD metabolism | 94.44 | 17 of 18 | ||
| 66794 | citric acid cycle | 92.86 | 13 of 14 | ||
| 66794 | glutamate and glutamine metabolism | 92.86 | 26 of 28 | ||
| 66794 | photosynthesis | 92.86 | 13 of 14 | ||
| 66794 | leucine metabolism | 92.31 | 12 of 13 | ||
| 66794 | urea cycle | 92.31 | 12 of 13 | ||
| 66794 | phenylalanine metabolism | 92.31 | 12 of 13 | ||
| 66794 | pentose phosphate pathway | 90.91 | 10 of 11 | ||
| 66794 | Entner Doudoroff pathway | 90 | 9 of 10 | ||
| 66794 | propionate fermentation | 90 | 9 of 10 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | allantoin degradation | 88.89 | 8 of 9 | ||
| 66794 | aspartate and asparagine metabolism | 88.89 | 8 of 9 | ||
| 66794 | d-mannose degradation | 88.89 | 8 of 9 | ||
| 66794 | CO2 fixation in Crenarchaeota | 88.89 | 8 of 9 | ||
| 66794 | serine metabolism | 88.89 | 8 of 9 | ||
| 66794 | vitamin B12 metabolism | 88.24 | 30 of 34 | ||
| 66794 | dTDPLrhamnose biosynthesis | 87.5 | 7 of 8 | ||
| 66794 | isoleucine metabolism | 87.5 | 7 of 8 | ||
| 66794 | gluconeogenesis | 87.5 | 7 of 8 | ||
| 66794 | flavin biosynthesis | 86.67 | 13 of 15 | ||
| 66794 | 3-phenylpropionate degradation | 86.67 | 13 of 15 | ||
| 66794 | peptidoglycan biosynthesis | 86.67 | 13 of 15 | ||
| 66794 | heme metabolism | 85.71 | 12 of 14 | ||
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | ||
| 66794 | glutathione metabolism | 85.71 | 12 of 14 | ||
| 66794 | propanol degradation | 85.71 | 6 of 7 | ||
| 66794 | vitamin B1 metabolism | 84.62 | 11 of 13 | ||
| 66794 | selenocysteine biosynthesis | 83.33 | 5 of 6 | ||
| 66794 | purine metabolism | 82.98 | 78 of 94 | ||
| 66794 | proline metabolism | 81.82 | 9 of 11 | ||
| 66794 | vitamin B6 metabolism | 81.82 | 9 of 11 | ||
| 66794 | cellulose degradation | 80 | 4 of 5 | ||
| 66794 | myo-inositol biosynthesis | 80 | 8 of 10 | ||
| 66794 | factor 420 biosynthesis | 80 | 4 of 5 | ||
| 66794 | vitamin K metabolism | 80 | 4 of 5 | ||
| 66794 | glycine betaine biosynthesis | 80 | 4 of 5 | ||
| 66794 | phenylacetate degradation (aerobic) | 80 | 4 of 5 | ||
| 66794 | glycogen metabolism | 80 | 4 of 5 | ||
| 66794 | metabolism of amino sugars and derivatives | 80 | 4 of 5 | ||
| 66794 | alanine metabolism | 79.31 | 23 of 29 | ||
| 66794 | degradation of pentoses | 78.57 | 22 of 28 | ||
| 66794 | pyrimidine metabolism | 77.78 | 35 of 45 | ||
| 66794 | 4-hydroxymandelate degradation | 77.78 | 7 of 9 | ||
| 66794 | methionine metabolism | 76.92 | 20 of 26 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 76.47 | 13 of 17 | ||
| 66794 | glycolysis | 76.47 | 13 of 17 | ||
| 66794 | tryptophan metabolism | 76.32 | 29 of 38 | ||
| 66794 | degradation of sugar acids | 76 | 19 of 25 | ||
| 66794 | ketogluconate metabolism | 75 | 6 of 8 | ||
| 66794 | toluene degradation | 75 | 3 of 4 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | cyclohexanol degradation | 75 | 3 of 4 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | ||
| 66794 | C4 and CAM-carbon fixation | 75 | 6 of 8 | ||
| 66794 | degradation of sugar alcohols | 75 | 12 of 16 | ||
| 66794 | arginine metabolism | 75 | 18 of 24 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | lipid metabolism | 74.19 | 23 of 31 | ||
| 66794 | non-pathway related | 73.68 | 28 of 38 | ||
| 66794 | metabolism of disaccharids | 72.73 | 8 of 11 | ||
| 66794 | oxidative phosphorylation | 72.53 | 66 of 91 | ||
| 66794 | ubiquinone biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 70 | 7 of 10 | ||
| 66794 | sulfate reduction | 69.23 | 9 of 13 | ||
| 66794 | lysine metabolism | 69.05 | 29 of 42 | ||
| 66794 | degradation of hexoses | 66.67 | 12 of 18 | ||
| 66794 | IAA biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | acetyl CoA biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | methane metabolism | 66.67 | 2 of 3 | ||
| 66794 | cysteine metabolism | 66.67 | 12 of 18 | ||
| 66794 | tyrosine metabolism | 64.29 | 9 of 14 | ||
| 66794 | tetrahydrofolate metabolism | 64.29 | 9 of 14 | ||
| 66794 | carotenoid biosynthesis | 63.64 | 14 of 22 | ||
| 66794 | androgen and estrogen metabolism | 62.5 | 10 of 16 | ||
| 66794 | isoprenoid biosynthesis | 61.54 | 16 of 26 | ||
| 66794 | arachidonate biosynthesis | 60 | 3 of 5 | ||
| 66794 | D-cycloserine biosynthesis | 60 | 3 of 5 | ||
| 66794 | lipoate biosynthesis | 60 | 3 of 5 | ||
| 66794 | histidine metabolism | 58.62 | 17 of 29 | ||
| 66794 | cholesterol biosynthesis | 54.55 | 6 of 11 | ||
| 66794 | polyamine pathway | 52.17 | 12 of 23 | ||
| 66794 | sphingosine metabolism | 50 | 3 of 6 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | quinate degradation | 50 | 1 of 2 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | vitamin E metabolism | 50 | 2 of 4 | ||
| 66794 | lactate fermentation | 50 | 2 of 4 | ||
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 46.15 | 6 of 13 | ||
| 66794 | phenylpropanoid biosynthesis | 46.15 | 6 of 13 | ||
| 66794 | chlorophyll metabolism | 44.44 | 8 of 18 | ||
| 66794 | lipid A biosynthesis | 44.44 | 4 of 9 | ||
| 66794 | arachidonic acid metabolism | 44.44 | 8 of 18 | ||
| 66794 | nitrate assimilation | 44.44 | 4 of 9 | ||
| 66794 | benzoyl-CoA degradation | 42.86 | 3 of 7 | ||
| 66794 | ascorbate metabolism | 40.91 | 9 of 22 | ||
| 66794 | hydrogen production | 40 | 2 of 5 | ||
| 66794 | coenzyme M biosynthesis | 40 | 4 of 10 | ||
| 66794 | creatinine degradation | 40 | 2 of 5 | ||
| 66794 | carnitine metabolism | 37.5 | 3 of 8 | ||
| 66794 | d-xylose degradation | 36.36 | 4 of 11 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | sulfoquinovose degradation | 33.33 | 1 of 3 | ||
| 66794 | aclacinomycin biosynthesis | 28.57 | 2 of 7 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | catecholamine biosynthesis | 25 | 1 of 4 | ||
| 66794 | daunorubicin biosynthesis | 22.22 | 2 of 9 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM210196v1 assembly for Mycolicibacterium wolinskyi ATCC 700010 | contig | 59750 | 71.44 | ||||
| 66792 | ASM2582247v1 assembly for Mycolicibacterium wolinskyi CCUG 47168 | scaffold | 59750 | 65.9 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 64151 | Mycolicibacterium wolinskyi strain ATCC 700010 16S ribosomal RNA gene, partial sequence | AY457083 | 1485 | 59750 | ||
| 67770 | M.wolinsky 16S rRNA gene, strain ATCC 700010 | Y12873 | 1413 | 59750 | ||
| 124043 | Mycobacterium wolinskyi strain CIP 106348 16S ribosomal RNA gene, partial sequence. | AF547981 | 540 | 59750 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 57.80 | no |
| 125439 | motility | BacteriaNetⓘ | no | 80.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 96.10 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 98.40 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 89.84 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.23 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 60.37 | no |
| 125438 | aerobic | aerobicⓘ | yes | 90.42 | no |
| 125438 | thermophilic | thermophileⓘ | no | 96.40 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 87.60 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera. | Gupta RS, Lo B, Son J. | Front Microbiol | 10.3389/fmicb.2018.00067 | 2018 | |
| A Case Report of Refractory Mycobacterium wolinskyi Knee Infection in a Metabolic Syndrome Patient: mNGS Diagnosis and Pharmacist-Guided Therapy. | Shao M, Ni L, Jiang L, Hou J, Xu S, Lin Y, Xie X. | Infect Drug Resist | 10.2147/idr.s542439 | 2025 | ||
| Catheter-related bloodstream Mycobacterium wolinskyi infection in an umbilical cord blood transplant recipient: a case report. | Muranaka E, Hase R, Utsu Y, Watari T, Otsuka Y, Hosokawa N. | BMC Infect Dis | 10.1186/s12879-022-07495-z | 2022 | ||
| Mycobacterium wolinskyi infection confirmed by rpoB gene sequencing. | Jeong JH, Seo YH, Kim KH, Ahn JY, Park PH, Park YK. | J Clin Lab Anal | 10.1002/jcla.21526 | 2012 | ||
| First case report of infection by Mycobacterium wolinskyi after mammoplasty in Brazil. | Santos Lima A, Carneiro Neves MM, Machado Gomes K, Miranda Guarines K, Luna CF, Silva Duarte R, Lapa Montenegro LM, Charifker Schindler H. | Infect Dis Rep | 10.4081/idr.2013.e12 | 2013 | ||
| Enzymology | Facial skin and soft tissue infection caused by Mycobacterium wolinskyi associated with cosmetic procedures. | Yoo SJ, Lee KH, Jung SN, Heo ST. | BMC Infect Dis | 10.1186/1471-2334-13-479 | 2013 | |
| Mycobacterium jinjuensis sp. nov., a Novel Acid-Fast Bacterium Isolated from a Pneumonia Patient. | Trinh MP, Shin JI, Kim KM, Dao TO, Choi JG, Jung M, Kang HL, Baik SC, Lee WK, Byun JH, Shin MK. | Curr Microbiol | 10.1007/s00284-025-04473-x | 2025 | ||
| Phylogeny | Mycobacterium appelbergii sp. nov., a Novel Species Isolated from a Drinking Water Fountain in a Rural Community. | Roxo IC, Alarico S, Fonseca A, Machado D, Maranha A, Tiago I, Duarte R, Empadinhas N. | Microorganisms | 10.3390/microorganisms13061259 | 2025 | |
| Phylogeny | Mycobacterium wolinskyi sp. nov. and Mycobacterium goodii sp. nov., two new rapidly growing species related to Mycobacterium smegmatis and associated with human wound infections: a cooperative study from the International Working Group on Mycobacterial Taxonomy. | Brown BA, Springer B, Steingrube VA, Wilson RW, Pfyffer GE, Garcia MJ, Menendez MC, Rodriguez-Salgado B, Jost KC Jr, Chiu SH, Onyi GO, Bottger EC, Wallace RJ Jr | Int J Syst Bacteriol | 10.1099/00207713-49-4-1493 | 1999 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #36249 | ; Curators of the CIP; |
| #57551 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47168 |
| #64151 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44493 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68382 | Automatically annotated from API zym . |
| #123956 | Collection of Institut Pasteur ; Curators of the CIP; CIP 106348 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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