Haematobacter missouriensis (CIP 109176, CCUG 52307, CDC H1892)

Name: Haematobacter missouriensis (CIP 109176, CCUG 52307, CDC H1892)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 136704

Type strain

Culture col. no. CIP 109176 CCUG 52307 CDC H1892

NCBI tax ID(s) 366616

Special Collections CCUG CIP

Links

Haematobacter missouriensis CIP 109176 is a microaerophile, mesophilic, Gram-negative prokaryote of the family Paracoccaceae.

Gram-negative rod-shaped microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 303404

CCUG 52307,CIP 109176

@ref 20215

Last LPSN update 2025-12-16 10:02:38

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Paracoccaceae

Genus Haematobacter

Species Haematobacter missouriensis

Full scientific name Haematobacter missouriensis Helsel et al. 2007

BacDive ID	Other strains from **Haematobacter missouriensis** (4)	Type strain
154086	H. missouriensis CCUG 52311
154087	H. missouriensis CCUG 52312
154089	H. missouriensis CCUG 52314
154092	H. missouriensis CCUG 52317

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438	negative		97.482
125439	negative		96.7
36215	negative	rod-shaped

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
36215	MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
36215	CIP Medium 10			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
36215	positive	growth	35	mesophilic
59501	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
59501	microaerophile
36215	obligate aerobe
125439	aerobe	92.4

Spore formation

@ref	Spore formation	Confidence
125438		90.126
125439		96.4

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
36215	17632 ChEBI	nitrate	-	reduction
36215	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
36215	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
36215	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
36215	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
36215	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
36215	ornithine decarboxylase	-	4.1.1.17
36215	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
36215	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

59501

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	78.4	17.824
C19:0 CYCLO ω8c	8.1	18.9
C16:0	4.1	16
C10:0 3OH	4	11.423
C14:0 3OH/C16:1 ISO I	3	15.485
Unidentified	2.4	18.146

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
36215	-	+	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Microbial	#Bacteria
#Host Body Product	#Fluids	#Blood
#Host	#Human	#Male
#Infection	#Inflammation	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
36215			Missouri	USA	USA	North America
59501	Human blood,88-yr-old male,septicemia	2001	Missouri	USA	USA	North America
36215	Human, Blood		Missouri	United States of America	USA	North America	2001

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
36215	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM74077v1 assembly for Haematobacter missouriensis CCUG 52307	contig	GCA_000740775	366616.15	2600255082	366616	51.88

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Haematobacter missouriensis strain CCUG 52307 16S ribosomal RNA gene, partial sequence.	DQ342315	1389		366616

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Haematobacter missouriensis CCUG 52307
NCBI: GCA_000740775

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.40	no
125439	motility	BacteriaNetⓘ	yes	61.40	no
125439	gram_stain	BacteriaNetⓘ	negative	96.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	92.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Haematobacter missouriensis strain CCUG 52307
PATRIC: 366616.15

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.48	no
125438	anaerobic	anaerobicⓘ	no	96.23	yes
125438	spore-forming	spore-formingⓘ	no	90.13	no
125438	aerobic	aerobicⓘ	yes	81.82	no
125438	thermophilic	thermophileⓘ	no	96.22	yes
125438	flagellated	motile2+ⓘ	no	55.72	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Identification of "Haematobacter," a new genus of aerobic Gram-negative rods isolated from clinical specimens, and reclassification of Rhodobacter massiliensis as "Haematobacter massiliensis comb. nov.".	Helsel LO, Hollis D, Steigerwalt AG, Morey RE, Jordan J, Aye T, Radosevic J, Jannat-Khah D, Thiry D, Lonsway DR, Patel JB, Daneshvar MI, Levett PN.	J Clin Microbiol	10.1128/jcm.01188-06	2007
Phylogeny	Paenirhodobacter enshiensis gen. nov., sp. nov., a non-photosynthetic bacterium isolated from soil, and emended descriptions of the genera Rhodobacter and Haematobacter.	Wang D, Liu H, Zheng S, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.050351-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36215	Collection of Institut Pasteur ; Curators of the CIP; CIP 109176
#59501	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52307
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haematobacter missouriensis (CIP 109176, CCUG 52307, CDC H1892)

Name and taxonomic classification