Name: Dinoroseobacter shibae DSM 16493
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13662

Type strain:

Species: Dinoroseobacter shibae

Culture col. no.: DSM 16493, DFL 12

Strain history: <- H. Biebl <- M. Allgaier; DFL 12

NCBI tax ID(s): 398580 (strain), 215813 (species)

SI-ID 138979

DSM 16493, NCIMB 14021

Section

Dinoroseobacter shibae DSM 16493 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Culture of Prorocentrum lima , dinoflagellate culture collection Helgoland.

Gram-negative
motile
ovoid-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Dinoroseobacter*
	Species	**Dinoroseobacter shibae**
	Full Scientific Name (LPSN)	Dinoroseobacter shibae Biebl et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31424]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #31424]	Cell length	0.65 µm

[Ref.: #31424]	Cell width	0.5 µm

[Ref.: #31424]	Cell shape	ovoid-shaped

[Ref.: #31424]	Motility	yes

[Ref.: #6375]

Incubation period

2-3 days

[Ref.: #31424]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6375]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6375]

Culture medium growth

[Ref.: #6375]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6375]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6375]	growth	30 °C
[Ref.: #31424]	growth	15-38 °C
[Ref.: #31424]	optimum	33 °C

[Ref.: #6375]	Temperature range	mesophilic
[Ref.: #31424]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31424]			optimum	7.75
[Ref.: #31424]			growth	6.2-8.9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31424]

Oxygen tolerance

aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.992

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31424]		NaCl		growth	1.0-7.0	%
[Ref.: #31424]		NaCl		optimum	4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31424]	acetate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #31424]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #31424]	fructose ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #31424]	glucose ChEBI	+	carbon source
[Ref.: #31424]	glutamate ChEBI	+	carbon source
[Ref.: #31424]	glycerol ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #31424]	lactate ChEBI	+	carbon source
[Ref.: #31424]	malate ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #31424]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #31424]	pyruvate ChEBI	+	carbon source
[Ref.: #31424]	succinate ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #31424]	tween 80 ChEBI	+	carbon source
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #6375]	catalase	+	1.11.1.6
[Ref.: #6375]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #31424]	gelatinase	+
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #6375]	23752	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	d-mannose degradation	100	9 of 9
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	methane metabolism	100	3 of 3
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	ethylmalonyl-CoA pathway	100	5 of 5
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	alginate biosynthesis	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	allantoin degradation	100	9 of 9
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	citric acid cycle	92.86	13 of 14
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	91.67	11 of 12
[Ref.: #66794]	vitamin B12 metabolism	91.18	31 of 34
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	alanine metabolism	86.21	25 of 29
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	purine metabolism	84.04	79 of 94
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	creatinine degradation	80	4 of 5
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	glutathione metabolism	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	pyrimidine metabolism	77.78	35 of 45
[Ref.: #66794]	urea cycle	76.92	10 of 13
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	degradation of sugar alcohols	75	12 of 16
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	non-pathway related	73.68	28 of 38
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	methionine metabolism	73.08	19 of 26
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	cysteine metabolism	72.22	13 of 18
[Ref.: #66794]	lipid metabolism	70.97	22 of 31
[Ref.: #66794]	oxidative phosphorylation	70.33	64 of 91
[Ref.: #66794]	sulfate reduction	69.23	9 of 13
[Ref.: #66794]	degradation of pentoses	67.86	19 of 28
[Ref.: #66794]	nitrate assimilation	66.67	6 of 9
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	66.67	6 of 9
[Ref.: #66794]	tryptophan metabolism	65.79	25 of 38
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	arginine metabolism	62.5	15 of 24
[Ref.: #66794]	degradation of hexoses	61.11	11 of 18
[Ref.: #66794]	chlorophyll metabolism	61.11	11 of 18
[Ref.: #66794]	vitamin K metabolism	60	3 of 5
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	4-hydroxyphenylacetate degradation	50	5 of 10
[Ref.: #66794]	lysine metabolism	50	21 of 42
[Ref.: #66794]	carnitine metabolism	50	4 of 8
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	phenol degradation	50	10 of 20
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	46.15	6 of 13
[Ref.: #66794]	d-xylose degradation	45.45	5 of 11
[Ref.: #66794]	degradation of sugar acids	44	11 of 25
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	starch degradation	30	3 of 10
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	polyamine pathway	26.09	6 of 23
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6375]	Sample type/isolated from	Culture of Prorocentrum lima (isolated at seaside near Vigo, Spain), dinoflagellate culture collection Helgoland
[Ref.: #6375]	Host species	Prorocentrum lima
[Ref.: #6375]	Geographic location (country and/or sea, region)	Helgoland
[Ref.: #6375]	Country	Germany
[Ref.: #6375]	Country ISO 3 Code	DEU
[Ref.: #6375]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Host	#Protozoa	#Dinoflagellate

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ534211 (>99% sequence identity) for Dinoroseobacter shibae subclade from Microbeatlas

Aquatic Samples	968
Soil Samples	76
Animal Samples	190
Plant Samples	12
Total Samples	1246

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6375]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31424]	Dinoroseobacter shibae 16S rRNA gene, type strain DFL 12T	AJ534211	1262	GenBank	398580 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dinoroseobacter shibae DFL 12 = DSM 16493	GCA_000018145	complete	GenBank	398580 tax ID	*
[Ref.: #66792]	Dinoroseobacter shibae DFL 12 = DSM 16493	398580.32	plasmid	PATRIC	398580 tax ID	*
[Ref.: #66792]	Dinoroseobacter shibae DFL 12 = DSM 16493	398580.30	plasmid	PATRIC	398580 tax ID	*
[Ref.: #66792]	Dinoroseobacter shibae DFL 12 = DSM 16493	398580.31	plasmid	PATRIC	398580 tax ID	*
[Ref.: #66792]	Dinoroseobacter shibae DFL 12 = DSM 16493	398580.34	plasmid	PATRIC	398580 tax ID	*
[Ref.: #66792]	Dinoroseobacter shibae DFL 12 = DSM 16493	398580.33	plasmid	PATRIC	398580 tax ID	*

[Ref.: #31424]

GC-content

64.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dinoroseobacter shibae DFL 12 = DSM 16493 DFL 12 NCBI: GCA_000018145.1
[Ref.: #69481]	spore-forming	no	87	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dinoroseobacter shibae DFL 12 = DSM 16493 DFL 12 NCBI: GCA_000018145.1
[Ref.: #69480]	motile	no	50.563	yes
[Ref.: #69480]	flagellated	no	86.866	no
[Ref.: #69480]	gram-positive	no	98.579	yes
[Ref.: #69480]	anaerobic	no	98.712	yes
[Ref.: #69480]	aerobic	yes	90.896	yes
[Ref.: #69480]	halophile	yes	79.375	no
[Ref.: #69480]	spore-forming	no	96.022	no
[Ref.: #69480]	thermophile	no	97.103	yes
[Ref.: #69480]	glucose-util	yes	63.436	no
[Ref.: #69480]	glucose-ferment	no	91.803	yes

Availability in culture collections External links

[Ref.: #6375]

Culture collection no.

DSM 16493, DFL 12

[Ref.: #82845]

SI-ID 138979

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Metabolism of chiral sulfonate compound 2,3-dihydroxypropane-1-sulfonate (DHPS) by Roseobacter bacteria in marine environment.	Chen X, Liu L, Gao X, Dai X, Han Y, Chen Q, Tang K	Environ Int	10.1016/j.envint.2021.106829	2021	*
Genetics	A newly isolated roseophage represents a distinct member of Siphoviridae family.	Cai L, Ma R, Chen H, Yang Y, Jiao N, Zhang R	Virol J	10.1186/s12985-019-1241-6	2019	*
Metabolism	Nitric oxide controls c-di-GMP turnover in Dinoroseobacter shibae.	Bedrunka P, Olbrisch F, Ruger M, Zehner S, Frankenberg-Dinkel N	Microbiology (Reading)	10.1099/mic.0.000714	2018	*
Metabolism	Heme and nitric oxide binding by the transcriptional regulator DnrF from the marine bacterium Dinoroseobacter shibae increases napD promoter affinity.	Ebert M, Schweyen P, Broring M, Laass S, Hartig E, Jahn D	J Biol Chem	10.1074/jbc.M117.798728	2017	*
Phylogeny	A Novel Roseosiphophage Isolated from the Oligotrophic South China Sea.	Yang Y, Cai L, Ma R, Xu Y, Tong Y, Huang Y, Jiao N, Zhang R	Viruses	10.3390/v9050109	2017	*
Metabolism	Fixation of CO2 using the ethylmalonyl-CoA pathway in the photoheterotrophic marine bacterium Dinoroseobacter shibae.	Bill N, Tomasch J, Riemer A, Muller K, Kleist S, Schmidt-Hohagen K, Wagner-Dobler I, Schomburg D	Environ Microbiol	10.1111/1462-2920.13746	2017	*
Metabolism	Dealing with salinity extremes and nitrogen limitation - an unexpected strategy of the marine bacterium Dinoroseobacter shibae.	Kleist S, Ulbrich M, Bill N, Schmidt-Hohagen K, Geffers R, Schomburg D	Environ Microbiol	10.1111/1462-2920.13266	2016	*
Genetics	Erratum to: 'Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12'.	Ji J, Zhang R, Jiao N	Stand Genomic Sci	10.1186/s40793-015-0056-3	2015	*
Genetics	Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12.	Ji J, Zhang R, Jiao N	Stand Genomic Sci	10.1186/1944-3277-10-6	2015	*
Genetics	Complete genome sequence of vB_DshP-R2C, a N4-like lytic roseophage.	Cai L, Yang Y, Jiao N, Zhang R	Mar Genomics	10.1016/j.margen.2015.03.005	2015	*
Genetics	Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12.	Ji J, Zhang R, Jiao N	Stand Genomic Sci	10.1186/1944-3277-9-31	2015	*
Enzymology	Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria.	Kaschner M, Loeschcke A, Krause J, Minh BQ, Heck A, Endres S, Svensson V, Wirtz A, von Haeseler A, Jaeger KE, Drepper T, Krauss U	Mol Microbiol	10.1111/mmi.12719	2014	*
Metabolism	Gene regulatory and metabolic adaptation processes of Dinoroseobacter shibae DFL12T during oxygen depletion.	Laass S, Kleist S, Bill N, Druppel K, Kossmehl S, Wohlbrand L, Rabus R, Klein J, Rohde M, Bartsch A, Wittmann C, Schmidt-Hohagen K, Tielen P, Jahn D, Schomburg D	J Biol Chem	10.1074/jbc.M113.545004	2014	*
Cultivation	Light enhances survival of Dinoroseobacter shibae during long-term starvation.	Soora M, Cypionka H	PLoS One	10.1371/journal.pone.0083960	2013	*
Metabolism	Swimming in light: a large-scale computational analysis of the metabolism of Dinoroseobacter shibae.	Rex R, Bill N, Schmidt-Hohagen K, Schomburg D	PLoS Comput Biol	10.1371/journal.pcbi.1003224	2013	*
Phylogeny	Roseibacterium beibuensis sp. nov., a novel member of roseobacter clade isolated from Beibu Gulf in the South China Sea.	Mao Y, Wei J, Zheng Q, Xiao N, Li Q, Fu Y, Wang Y, Jiao N	Curr Microbiol	10.1007/s00284-012-0192-6	2012	*
Metabolism	Formation of polyhydroxyalkanoate in aerobic anoxygenic phototrophic bacteria and its relationship to carbon source and light availability.	Xiao N, Jiao N	Appl Environ Microbiol	10.1128/AEM.05955-11	2011	*
Metabolism	Genetic tools for the investigation of Roseobacter clade bacteria.	Piekarski T, Buchholz I, Drepper T, Schobert M, Wagner-Doebler I, Tielen P, Jahn D	BMC Microbiol	10.1186/1471-2180-9-265	2009	*
Genetics	The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.	Wagner-Dobler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, Cypionka H, Daniel R, Drepper T, Gerdts G, Hahnke S, Han C, Jahn D, Kalhoefer D, Kiss H, Klenk HP, Kyrpides N, Liebl W, Liesegang H, Meincke L, Pati A, Petersen J, Piekarski T, Pommerenke C, Pradella S, Pukall R, Rabus R, Stackebrandt E, Thole S, Thompson L, Tielen P, Tomasch J, von Jan M, Wanphrut N, Wichels A, Zech H, Simon M	ISME J	10.1038/ismej.2009.94	2009	*
Phylogeny	Wenxinia marina gen. nov., sp. nov., a novel member of the Roseobacter clade isolated from oilfield sediments of the South China Sea.	Ying JY, Wang BJ, Dai X, Yang SS, Liu SJ, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.64825-0	2007	*
Phylogeny	Dinoroseobacter shibae gen. nov., sp. nov., a new aerobic phototrophic bacterium isolated from dinoflagellates.	Biebl H, Allgaier M, Tindall BJ, Koblizek M, Lunsdorf H, Pukall R, Wagner-Dobler I	Int J Syst Evol Microbiol	10.1099/ijs.0.63511-0	2005	*
	Plasmid Transfer in the Ocean - A Case Study from the Roseobacter Group.	Petersen J, Wagner-Dobler I	Front Microbiol	10.3389/fmicb.2017.01350	2017	*
	Boosted Membrane Potential as Bioenergetic Response to Anoxia in Dinoroseobacter shibae.	Kirchhoff C, Cypionka H	Front Microbiol	10.3389/fmicb.2017.00695	2017	*
	Plasmid curing and the loss of grip--the 65-kb replicon of Phaeobacter inhibens DSM 17395 is required for biofilm formation, motility and the colonization of marine algae.	Frank O, Michael V, Pauker O, Boedeker C, Jogler C, Rohde M, Petersen J	Syst Appl Microbiol	10.1016/j.syapm.2014.12.001	2014	*

References

#6375

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16493

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31424

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27731 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82845

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138979.1 )

#27731

IJSEM 1089 2005 ( DOI 10.1099/ijs.0.63511-0 , PubMed 15879238 )

* These data were automatically processed and therefore are not curated

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Dinoroseobacter shibae DFL 12 = DSM 16493 DFL 12

Dinoroseobacter shibae DFL 12 = DSM 16493 DFL 12

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