Dinoroseobacter shibae DFL 12 | Type strain | DSM 16493

Strain identifier

BacDive ID: 13662

Type strain:

Species: Dinoroseobacter shibae

Strain Designation: DFL 12

Culture col. no.: DSM 16493

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	31-03-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Proteobacteria
	Class	Alphaproteobacteria
	Order	Rhodobacterales
	Family	Rhodobacteraceae
	Genus	Dinoroseobacter
	Species	Dinoroseobacter shibae
	Full Scientific Name (PNU)	Dinoroseobacter shibae Biebl et al. 2005

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #31424]	Gram stain	negative
[Ref.: #31424]	Cell length	0.65 µm
[Ref.: #31424]	Cell width	0.5 µm
[Ref.: #31424]	Cell shape	ovoid-shaped
[Ref.: #31424]	Motility	yes

[Ref.: #6375]

Incubation period

2-3 days

	Enzyme	Enzyme activity	EC number
[Ref.: #6375]	catalase	+	1.11.1.6
[Ref.: #6375]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #31424]	gelatinase	+

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31424]		NaCl		growth	1.0-7.0	%
[Ref.: #31424]		NaCl		optimum	4	%

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #6375]	9702	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31424]	acetate ChEBI	+	carbon source
[Ref.: #31424]	citrate ChEBI	+	carbon source
[Ref.: #31424]	fructose ChEBI	+	carbon source
[Ref.: #31424]	glucose ChEBI	+	carbon source
[Ref.: #31424]	glutamate ChEBI	+	carbon source
[Ref.: #31424]	glycerol ChEBI	+	carbon source
[Ref.: #31424]	lactate ChEBI	+	carbon source
[Ref.: #31424]	malate ChEBI	+	carbon source
[Ref.: #31424]	nitrate ChEBI	+	reduction
[Ref.: #31424]	pyruvate ChEBI	+	carbon source
[Ref.: #31424]	succinate ChEBI	+	carbon source
[Ref.: #31424]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #31424]

Oxygen tolerance

aerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #6375]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6375]

Culture medium growth

[Ref.: #6375]

Culture medium link

medium recipe provided by DSMZ

		Temperature
[Ref.: #6375]	growth	30 ̊C
[Ref.: #31424]	growth	15-38 ̊C
[Ref.: #31424]	optimum	33 ̊C

[Ref.: #6375]	Temperature range	mesophilic
[Ref.: #31424]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31424]			optimum	7.75
[Ref.: #31424]			growth	6.2-8.9

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #6375]

Sample type/isolated from

Culture of Prorocentrum lima (isolated at seaside near Vigo, Spain), dinoflagellate culture collection Helgoland

[Ref.: #6375]

Host species

Prorocentrum lima

[Ref.: #6375]

Geographic location (country and/or sea, region)

Helgoland

[Ref.: #6375]

Country

Germany

[Ref.: #6375]

Country ISO 3 Code

DEU

[Ref.: #6375]

Continent

Europe

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Host	#Protozoa	#Dinoflagellate

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #6375]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #31424]

GC-content

64.8 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #6375]	complete genome, GenBank Genome project data	Dinoroseobacter shibae DFL 12, complete genome	CP000830 ENA	WGS	3789584	398580 tax ID
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	TPA: Dinoroseobacter shibae DFL 12 transfer-messenger mRNA Dinor_shiba_DFL12, two-piece tmRNA, Acceptor RNA	HG790644 ENA		77	398580 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	TPA: Dinoroseobacter shibae DFL 12 transfer-messenger mRNA Dinor_shiba_DFL12, two-piece tmRNA, Coding RNA	HG790645 ENA		209	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	JP 2014508531-A/19: GENETICALLY MODIFIED CELL AND PROCESS FOR USE OF SAID CELL	HW575895 ENA		1458	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 32 from Patent WO2012064195	JC323548 ENA		1458	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Ala-GGC-1-1 gene	LK006326 ENA		76	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Ala-TGC-1-1 gene	LK006327 ENA		76	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Ala-TGC-1-2 gene	LK006328 ENA		76	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Arg-ACG-1-1 gene	LK006329 ENA		77	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Arg-CCG-1-1 gene	LK006330 ENA		77	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Arg-TCT-1-1 gene	LK006332 ENA		77	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Asn-GTT-1-1 gene	LK006333 ENA		75	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Asp-GTC-1-1 gene	LK006334 ENA		77	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Asp-GTC-1-2 gene	LK006335 ENA		77	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Cys-GCA-1-1 gene	LK006336 ENA		74	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Gln-TTG-1-1 gene	LK006337 ENA		75	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Glu-TTC-1-1 gene	LK006338 ENA		75	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Gly-GCC-1-1 gene	LK006340 ENA		75	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Gly-TCC-1-1 gene	LK006341 ENA		74	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-His-GTG-1-1 gene	LK006342 ENA		77	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Ile-GAT-1-1 gene	LK006343 ENA		77	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Ile-GAT-1-2 gene	LK006344 ENA		77	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Leu-CAA-1-1 gene	LK006345 ENA		87	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Leu-CAG-1-1 gene	LK006346 ENA		87	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Leu-GAG-1-1 gene	LK006347 ENA		87	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Leu-TAA-1-1 gene	LK006348 ENA		86	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Leu-TAG-1-1 gene	LK006349 ENA		85	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Lys-TTT-1-1 gene	LK006350 ENA		76	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Met-CAT-1-1 gene	LK006351 ENA		77	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Met-CAT-2-1 gene	LK006352 ENA		77	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Phe-GAA-1-1 gene	LK006353 ENA		75	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Pro-CGG-1-1 gene	LK006354 ENA		77	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Pro-GGG-1-1 gene	LK006355 ENA		77	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Pro-TGG-1-1 gene	LK006356 ENA		77	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Ser-CGA-1-1 gene	LK006357 ENA		90	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Ser-GCT-1-1 gene	LK006358 ENA		90	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Ser-GGA-1-1 gene	LK006359 ENA		90	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Ser-TGA-1-1 gene	LK006360 ENA		90	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Thr-CGT-1-1 gene	LK006361 ENA		76	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Thr-GGT-1-1 gene	LK006362 ENA		75	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Thr-TGT-1-1 gene	LK006363 ENA		76	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Trp-CCA-1-1 gene	LK006364 ENA		76	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Tyr-GTA-1-1 gene	LK006365 ENA		84	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Val-CAC-1-1 gene	LK006366 ENA		75	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Val-GAC-1-1 gene	LK006367 ENA		75	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-Val-TAC-1-1 gene	LK006368 ENA		76	398580 tax ID	*
[Ref.: #20218]	INSDC Sequence	TPA: Dinoroseobacter shibae DFL 12 = DSM 16493 tRNA-iMet-CAT-1-1 gene	LK006369 ENA		77	398580 tax ID	*
[Ref.: #31424]	GenBank/EMBL/DDBJ	Dinoroseobacter shibae 16S rRNA gene, type strain DFL 12T	AJ534211 GenBank	16S	1262	398580 tax ID

Availability in culture collectionsStrain availability

[Ref.: #6375]

Culture collection no.

DSM 16493

[Ref.: #6375]

Strain history

<- H. Biebl <- M. Allgaier; DFL 12

[Ref.: #20218]

Associated Passport(s) in StrainInfo

387731

References

#6375

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16493

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31424

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #27731 (see below)

#27731

IJSEM 1089 2005 ( DOI 10.1099/ijs.0.63511-0 )

* These References are textmined

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