Dinoroseobacter shibae (DSM 16493, DFL 12)

Name: Dinoroseobacter shibae (DSM 16493, DFL 12)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13662

Type strain

Culture col. no. DSM 16493 DFL 12

NCBI tax ID(s) 398580 215813

Special Collections DSMZ Literature strains North Sea Microbiome

History <- H. Biebl <- M. Allgaier; DFL 12

Links

Dinoroseobacter shibae DSM 16493 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from Culture of Prorocentrum lima , dinoflagellate culture collection Helgoland.

Gram-negative motile ovoid-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 138979

DSM 16493,NCIMB 14021

@ref 20215

Last LPSN update 2026-02-09 11:21:12

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Dinoroseobacter

Species Dinoroseobacter shibae

Full scientific name Dinoroseobacter shibae Biebl et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31424	negative	0.65 µm	0.5 µm	ovoid-shaped
125438	negative				98
125439	negative				94.3

Colony morphology

6375

Incubation period2-3 days

Pigmentation

31424

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6375	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
6375	Salzwassermedium (SWM) (DSMZ Medium 1827)		Medium recipe provided by DSMZ

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6375	positive	growth	30	mesophilic
31424	positive	growth	15-38
31424	positive	optimum	33	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31424	positive	optimum	7.75
31424	positive	growth	6.2-8.9	alkaliphile

Physiology and metabolism

Oxygen tolerance

31424

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31424	NaCl	positive	growth	1.0-7.0 %
31424	NaCl	positive	optimum	4 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31424	30089 ChEBI	acetate	+	carbon source
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
31424	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
31424	28757 ChEBI	fructose	+	carbon source
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
31424	17234 ChEBI	glucose	+	carbon source
31424	29987 ChEBI	glutamate	+	carbon source
31424	17754 ChEBI	glycerol	+	carbon source
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
31424	24996 ChEBI	lactate	+	carbon source
31424	25115 ChEBI	malate	+	carbon source
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
31424	17632 ChEBI	nitrate	+	reduction
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
31424	15361 ChEBI	pyruvate	+	carbon source
31424	30031 ChEBI	succinate	+	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
31424	53426 ChEBI	tween 80	+	carbon source
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
6375	catalase	+	1.11.1.6
6375	cytochrome-c oxidase	+	1.9.3.1
31424	gelatinase	+
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	palmitate biosynthesis	100	22 of 22
66794	adipate degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	d-mannose degradation	100	9 of 9
66794	suberin monomers biosynthesis	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	methylglyoxal degradation	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	methane metabolism	100	3 of 3
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	cardiolipin biosynthesis	100	7 of 7
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	ceramide biosynthesis	100	1 of 1
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	octane oxidation	100	3 of 3
66794	denitrification	100	2 of 2
66794	alginate biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	butanoate fermentation	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	kanosamine biosynthesis II	100	2 of 2
66794	CMP-KDO biosynthesis	100	4 of 4
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	allantoin degradation	100	9 of 9
66794	ppGpp biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	citric acid cycle	92.86	13 of 14
66794	vitamin B1 metabolism	92.31	12 of 13
66794	degradation of aromatic, nitrogen containing compounds	91.67	11 of 12
66794	vitamin B12 metabolism	91.18	31 of 34
66794	Entner Doudoroff pathway	90	9 of 10
66794	propionate fermentation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	alanine metabolism	86.21	25 of 29
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	leucine metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	purine metabolism	84.04	79 of 94
66794	NAD metabolism	83.33	15 of 18
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	proline metabolism	81.82	9 of 11
66794	gallate degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	creatinine degradation	80	4 of 5
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	glutathione metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	pyrimidine metabolism	77.78	35 of 45
66794	urea cycle	76.92	10 of 13
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	lactate fermentation	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	acetate fermentation	75	3 of 4
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	cyclohexanol degradation	75	3 of 4
66794	degradation of sugar alcohols	75	12 of 16
66794	ketogluconate metabolism	75	6 of 8
66794	non-pathway related	73.68	28 of 38
66794	flavin biosynthesis	73.33	11 of 15
66794	methionine metabolism	73.08	19 of 26
66794	vitamin B6 metabolism	72.73	8 of 11
66794	pentose phosphate pathway	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	lipid metabolism	70.97	22 of 31
66794	oxidative phosphorylation	70.33	64 of 91
66794	sulfate reduction	69.23	9 of 13
66794	degradation of pentoses	67.86	19 of 28
66794	nitrate assimilation	66.67	6 of 9
66794	IAA biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	4-hydroxymandelate degradation	66.67	6 of 9
66794	tryptophan metabolism	65.79	25 of 38
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	glycolysis	64.71	11 of 17
66794	tyrosine metabolism	64.29	9 of 14
66794	arginine metabolism	62.5	15 of 24
66794	degradation of hexoses	61.11	11 of 18
66794	chlorophyll metabolism	61.11	11 of 18
66794	vitamin K metabolism	60	3 of 5
66794	myo-inositol biosynthesis	60	6 of 10
66794	glycogen metabolism	60	3 of 5
66794	3-phenylpropionate degradation	60	9 of 15
66794	histidine metabolism	58.62	17 of 29
66794	metabolism of disaccharids	54.55	6 of 11
66794	sulfopterin metabolism	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	lysine metabolism	50	21 of 42
66794	carnitine metabolism	50	4 of 8
66794	glycine metabolism	50	5 of 10
66794	phenol degradation	50	10 of 20
66794	phenylmercury acetate degradation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	resorcinol degradation	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	d-xylose degradation	45.45	5 of 11
66794	degradation of sugar acids	44	11 of 25
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	glycine betaine biosynthesis	40	2 of 5
66794	cellulose degradation	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	sphingosine metabolism	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	ascorbate metabolism	31.82	7 of 22
66794	starch degradation	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	mevalonate metabolism	28.57	2 of 7
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	polyamine pathway	26.09	6 of 23
66794	glycogen biosynthesis	25	1 of 4

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
6375	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Laboratory	#Lab enrichment
#Host	#Protozoa	#Dinoflagellate

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
6375	Culture of Prorocentrum lima (isolated at seaside near Vigo, Spain), dinoflagellate culture collection Helgoland	Prorocentrum lima	Helgoland	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ534211 (>99% sequence identity) for Dinoroseobacter shibae subclade from Microbeatlas

Aquatic Samples	968
Soil Samples	76
Animal Samples	190
Plant Samples	12
Total Samples	1246

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6375	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1814v1 assembly for Dinoroseobacter shibae DFL 12 = DSM 16493	complete	GCA_000018145	398580.10	2501004205	398580	98.5

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31424	Dinoroseobacter shibae 16S rRNA gene, type strain DFL 12T	AJ534211	1262		398580
124043	UNVERIFIED: Dinoroseobacter shibae DFL 12 = DSM 16493 culture DSM:16493 16S ribosomal RNA-like gene, partial sequence.	OR552459	281		398580

GC content

31424

GC-content (mol%)64.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Dinoroseobacter shibae DFL-12, DSM 16493
IMG: 2501004205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	88.40	no
125439	motility	BacteriaNetⓘ	yes	67.60	no
125439	gram_stain	BacteriaNetⓘ	negative	94.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	78.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Dinoroseobacter shibae DFL 12 = DSM 16493 DFL 12
NCBI: GCA_000018145.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	yes
125438	anaerobic	anaerobicⓘ	no	92.95	no
125438	aerobic	aerobicⓘ	yes	85.35	no
125438	spore-forming	spore-formingⓘ	no	86.86	no
125438	thermophilic	thermophileⓘ	no	96.53	yes
125438	flagellated	motile2+ⓘ	no	57.78	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Structural basis for aerobic anoxygenic photosynthesis in the reaction center-light-harvesting 1 (RC-LH1) supercomplex of Dinoroseobacter shibae.	Liu ZK, Li JX, Zhang YY, Lv JL, Li K, Chen XL, Zhang YZ, Liu LN, Wang P.	Commun Biol	10.1038/s42003-025-08935-7	2025
	Structural and regulatory determinants of flagellar motility in Rhodobacterales-the archetypal flagellum of Phaeobacter inhibens DSM 17395.	Tomasch J, Bartling P, Vollmers J, Wohlbrand L, Jarek M, Rohde M, Brinkmann H, Freese HM, Rabus R, Petersen J.	mSystems	10.1128/msystems.00419-25	2025
	Do carotenoids protect phytodetritus-associated bacteria from oxidative stress?	Simon G, Casalot L, Valette C, Burot C, Rontani JF, Bonin P.	Environ Sci Pollut Res Int	10.1007/s11356-025-36080-5	2025
	Cryo-EM Analysis of a Tri-Heme Cytochrome-Associated RC-LH1 Complex from the Marine Photoheterotrophic Bacterium Dinoroseobacter Shibae.	Wang W, Liu Y, Gu J, An S, Ma C, Gao H, Jiao N, Shen JR, Beatty JT, Koblizek M, Zhang X, Zheng Q, Chen JH.	Adv Sci (Weinh)	10.1002/advs.202413456	2025
	The impact of tropodithietic acid on microbial physiology under varying culture complexities.	Shlakhter O, Malitsky S, Segev E.	mSphere	10.1128/msphere.00138-25	2025
	The Sixth Element: a 102-kb RepABC Plasmid of Xenologous Origin Modulates Chromosomal Gene Expression in Dinoroseobacter shibae.	Koppenhofer S, Tomasch J, Ringel V, Birmes L, Brinkmann H, Sproer C, Jarek M, Wang H, Pradella S, Wagner-Dobler I, Petersen J.	mSystems	10.1128/msystems.00264-22	2022
	Engineered Marine Biofilms for Ocean Environment Monitoring.	Nevot G, Pol Cros M, Toloza L, Campama-Sanz N, Artigues-Lleixa M, Aguilera L, Guell M.	ACS Synth Biol	10.1021/acssynbio.5c00192	2025
	Breakdown of 3-(allylsulfonio)propanoates in bacteria from the Roseobacter group yields garlic oil constituents.	Chhalodia AK, Dickschat JS.	Beilstein J Org Chem	10.3762/bjoc.17.51	2021
	Modular Low-Copy-Number Plasmid Vectors for Rhodobacterales with Extended Host Range in Alphaproteobacteria.	Korner D, Schafer NM, Lagares A, Birmes L, Oehlmann NN, Addison H, Pohl S, Thanbichler M, Rebelein JG, Petersen J, Becker A.	ACS Synth Biol	10.1021/acssynbio.4c00062	2024
	Dinoroseobacter shibae Outer Membrane Vesicles Are Enriched for the Chromosome Dimer Resolution Site dif.	Wang H, Beier N, Boedeker C, Sztajer H, Henke P, Neumann-Schaal M, Mansky J, Rohde M, Overmann J, Petersen J, Klawonn F, Kucklick M, Engelmann S, Tomasch J, Wagner-Dobler I.	mSystems	10.1128/msystems.00693-20	2021
	Enantioselective transformation of phytoplankton-derived dihydroxypropanesulfonate by marine bacteria.	Liu L, Gao X, Dong C, Wang H, Chen X, Ma X, Liu S, Chen Q, Lin D, Jiao N, Tang K.	ISME J	10.1093/ismejo/wrae084	2024
	Sulfoquinovose is a widespread organosulfur substrate for Roseobacter clade bacteria in the ocean.	Liu L, Chen X, Ye J, Ma X, Han Y, He Y, Tang K.	ISME J	10.1038/s41396-022-01353-1	2023
Genetics	Shared properties of gene transfer agent and core genes revealed by comparative genomics of Alphaproteobacteria.	Koppenhofer S, Tomasch J, Lang AS.	Microb Genom	10.1099/mgen.0.000890	2022
	Genome-Wide Discovery of Putative sRNAs in Paracoccus denitrificans Expressed under Nitrous Oxide Emitting Conditions.	Gaimster H, Chalklen L, Alston M, Munnoch JT, Richardson DJ, Gates AJ, Rowley G.	Front Microbiol	10.3389/fmicb.2016.01806	2016
	The Exometabolome of Two Model Strains of the Roseobacter Group: A Marketplace of Microbial Metabolites.	Wienhausen G, Noriega-Ortega BE, Niggemann J, Dittmar T, Simon M.	Front Microbiol	10.3389/fmicb.2017.01985	2017
	A marine plasmid hitchhiking vast phylogenetic and geographic distances.	Petersen J, Vollmers J, Ringel V, Brinkmann H, Ellebrandt-Sperling C, Sproer C, Howat AM, Murrell JC, Kaster AK.	Proc Natl Acad Sci U S A	10.1073/pnas.1905878116	2019
	Does the Chemodiversity of Bacterial Exometabolomes Sustain the Chemodiversity of Marine Dissolved Organic Matter?	Noriega-Ortega BE, Wienhausen G, Mentges A, Dittmar T, Simon M, Niggemann J.	Front Microbiol	10.3389/fmicb.2019.00215	2019
	Vitamin B₁₂ is not shared by all marine prototrophic bacteria with their environment.	Sultana S, Bruns S, Wilkes H, Simon M, Wienhausen G.	ISME J	10.1038/s41396-023-01391-3	2023
Metabolism	Respiratory Kinetics of Marine Bacteria Exposed to Decreasing Oxygen Concentrations.	Gong X, Garcia-Robledo E, Schramm A, Revsbech NP.	Appl Environ Microbiol	10.1128/aem.03669-15	2015
	Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome.	Durham BP, Grote J, Whittaker KA, Bender SJ, Luo H, Grim SL, Brown JM, Casey JR, Dron A, Florez-Leiva L, Krupke A, Luria CM, Mine AH, Nigro OD, Pather S, Talarmin A, Wear EK, Weber TS, Wilson JM, Church MJ, DeLong EF, Karl DM, Steward GF, Eppley JM, Kyrpides NC, Schuster S, Rappe MS.	Stand Genomic Sci	10.4056/sigs.4998989	2014
Metabolism	Combined metabolomic and genomic analyses reveal phage-specific and infection stage-specific alterations to marine Roseobacter metabolism.	Jin M, Cai L, Lu L, Yu M, Zhang R.	ISME Commun	10.1093/ismeco/ycaf047	2025
Phylogeny	Isolation and characterization of a roseophage representing a novel genus in the N4-like Rhodovirinae subfamily distributed in estuarine waters.	Huang X, Yu C, Lu L.	BMC Genomics	10.1186/s12864-025-11463-7	2025
Pathogenicity	Proteomic Analysis of Marine Bacteriophages: Structural Conservation, Post-Translational Modifications, and Phage-Host Interactions.	Wei S, Wang A, Cai L, Ma R, Lu L, Li J, Zhang R.	Environ Microbiol	10.1111/1462-2920.70099	2025
	Survival of surface bacteriophages and their hosts in in situ deep-sea environments.	Wei W, Tian Y, Cai L, Xu Y, Xiao X, Wang Q, Wang H, Dong C, Shao Z, Jiao N, Zhang R.	Microbiol Spectr	10.1128/spectrum.04534-22	2024
	The blue light-dependent LOV-protein LdaP of Dinoroseobacter shibae acts as antirepressor of the PpsR repressor, regulating photosynthetic gene cluster expression.	Pucelik S, Becker M, Heyber S, Wohlbrand L, Rabus R, Jahn D, Hartig E.	Front Microbiol	10.3389/fmicb.2024.1351297	2024
	Co-evolution of gene transfer agents and their alphaproteobacterial hosts.	Kogay R, Zhaxybayeva O.	J Bacteriol	10.1128/jb.00398-23	2024
	Algal exudates promote conjugation in marine Roseobacters.	Duchin Rapp Y, Lipsman V, Yuda L, Kublanov IV, Matsliyah D, Segev E.	mBio	10.1128/mbio.01062-24	2024
	Minimal transcriptional regulation of horizontally transferred photosynthesis genes in phototrophic bacterium Gemmatimonas phototrophica.	Kopejtka K, Tomasch J, Shivaramu S, Saini MK, Kaftan D, Koblizek M.	mSystems	10.1128/msystems.00706-24	2024
	The mitigating effects of diatom-bacteria biofilm on coastal harmful algal blooms: A lab-based study concerning species-specific competition and biofilm formation.	Sun KM, Wang J, Ju Q, Zhao Y, Kong X, Yuan C, Tian Y.	J Environ Manage	10.1016/j.jenvman.2023.117544	2023
	Unveiling the significance of prokaryotic composition from ferromanganese crusts regarding the interlink between cobalt and vitamin B₁₂ in deep-sea ecosystems.	Montoya L, Escobar-Briones E.	Front Microbiol	10.3389/fmicb.2025.1524057	2025
Genetics	The effect of site-specific recombinases XerCD on the removal of over-replicated chromosomal DNA through outer membrane vesicles in bacteria.	Mansky J, Wang H, Wagner-Dobler I, Tomasch J.	Microbiol Spectr	10.1128/spectrum.02343-23	2024
	The radical SAM enzyme NirJ cleaves off two propionate side chains with the release of acrylate during heme d₁ biosynthesis.	Meyer H, Hoock MH, Zwara K, Jahn S, Schunemann V, Layer G.	FEBS J	10.1111/febs.70105	2025
Metabolism	Real-Time Tracking of Proton Transfer from the Reactive Cysteine to the Flavin Chromophore of a Photosensing Light Oxygen Voltage Protein.	Maia RNA, Ehrenberg D, Oldemeyer S, Knieps-Grunhagen E, Krauss U, Heberle J.	J Am Chem Soc	10.1021/jacs.1c03409	2021
Metabolism	RirA of Dinoroseobacter shibae senses iron via a [3Fe-4S]1+ cluster co-ordinated by three cysteine residues.	Behringer M, Plotzky L, Baabe D, Zaretzke MK, Schweyen P, Broring M, Jahn D, Hartig E.	Biochem J	10.1042/bcj20180734	2020
	The Influence of Genes on the "Killer Plasmid" of Dinoroseobacter shibae on Its Symbiosis With the Dinoflagellate Prorocentrum minimum.	Mansky J, Wang H, Ebert M, Hartig E, Jahn D, Tomasch J, Wagner-Dobler I.	Front Microbiol	10.3389/fmicb.2021.804767	2021
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Metabolism	Adaptation of Dinoroseobacter shibae to oxidative stress and the specific role of RirA.	Beier N, Kucklick M, Fuchs S, Mustafayeva A, Behringer M, Hartig E, Jahn D, Engelmann S.	PLoS One	10.1371/journal.pone.0248865	2021
Metabolism	Nonlinear effect of irradiance on photoheterotrophic activity and growth of the aerobic anoxygenic phototrophic bacterium Dinoroseobacter shibae.	Piwosz K, Kaftan D, Dean J, Setlik J, Koblizek M.	Environ Microbiol	10.1111/1462-2920.14003	2018
Metabolism	Propidium ion enters viable cells with high membrane potential during live-dead staining.	Kirchhoff C, Cypionka H.	J Microbiol Methods	10.1016/j.mimet.2017.09.011	2017
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Metabolism	Cross-exchange of B-vitamins underpins a mutualistic interaction between Ostreococcus tauri and Dinoroseobacter shibae.	Cooper MB, Kazamia E, Helliwell KE, Kudahl UJ, Sayer A, Wheeler GL, Smith AG.	ISME J	10.1038/s41396-018-0274-y	2019
Metabolism	Identification of new N-acylhomoserine lactone signalling compounds of Dinoroseobacter shibae DFL-12(T) by overexpression of luxI genes.	Neumann A, Patzelt D, Wagner-Dobler I, Schulz S.	Chembiochem	10.1002/cbic.201300424	2013
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Enzymology	Development of a rapid and highly accurate method for ¹³C tracer-based metabolomics and its application on a hydrogenotrophic methanogen.	Fukuyama Y, Shimamura S, Sakai S, Michimori Y, Sumida T, Chikaraishi Y, Atomi H, Nunoura T.	ISME Commun	10.1093/ismeco/ycad006	2024
Metabolism	Photodynamic Activation of Cholecystokinin 1 Receptor with Different Genetically Encoded Protein Photosensitizers and from Varied Subcellular Sites.	Li Y, Cui ZJ.	Biomolecules	10.3390/biom10101423	2020
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Genetics	Genome-resolved adaptation strategies of Rhodobacterales to changing conditions in the Chesapeake and Delaware Bays.	Ahmed MA, Campbell BJ.	Appl Environ Microbiol	10.1128/aem.02357-24	2025
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Genetics	New isolates refine the ecophysiology of the Roseobacter CHAB-I-5 lineage.	Lanclos VC, Feng X, Cheng C, Yang M, Hider CJ, Coelho JT, Kojima CY, Barnes SJ, Cleveland CS, Xie M, Zhao Y, Luo H, Thrash JC.	ISME Commun	10.1093/ismeco/ycaf068	2025
Genetics	High-throughput identification of viral termini and packaging mechanisms in virome datasets using PhageTermVirome.	Garneau JR, Legrand V, Marbouty M, Press MO, Vik DR, Fortier LC, Sullivan MB, Bikard D, Monot M.	Sci Rep	10.1038/s41598-021-97867-3	2021
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	Thiorhodovibrio frisius and Trv. litoralis spp. nov., Two Novel Members from a Clade of Fastidious Purple Sulfur Bacteria That Exhibit Unique Red-Shifted Light-Harvesting Capabilities.	Methner A, Kuzyk SB, Petersen J, Bauer S, Brinkmann H, Sichau K, Wanner G, Wolf J, Neumann-Schaal M, Henke P, Tank M, Sproer C, Bunk B, Overmann J.	Microorganisms	10.3390/microorganisms11102394	2023
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Enzymology	Complex Evolution of Light-Dependent Protochlorophyllide Oxidoreductases in Aerobic Anoxygenic Phototrophs: Origin, Phylogeny, and Function.	Chernomor O, Peters L, Schneidewind J, Loeschcke A, Knieps-Grunhagen E, Schmitz F, von Lieres E, Kutta RJ, Svensson V, Jaeger KE, Drepper T, von Haeseler A, Krauss U.	Mol Biol Evol	10.1093/molbev/msaa234	2021
Metabolism	Conserved small mRNA with an unique, extended Shine-Dalgarno sequence.	Hahn J, Thalmann S, Migur A, von Boeselager RF, Kubatova N, Kubareva E, Schwalbe H, Evguenieva-Hackenberg E.	RNA Biol	10.1080/15476286.2016.1256534	2017
Genetics	Volatiles of the Apicomplexan Alga Chromera velia and Associated Bacteria.	Koteska D, Marter P, Huang S, Pradella S, Petersen J, Schulz S.	Chembiochem	10.1002/cbic.202200530	2023
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Genetics	Beyond the ABCs-Discovery of Three New Plasmid Types in Rhodobacterales (RepQ, RepY, RepW).	Freese HM, Ringel V, Overmann J, Petersen J.	Microorganisms	10.3390/microorganisms10040738	2022
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Proteome	"You produce while I clean up", a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions.	Christie-Oleza JA, Scanlan DJ, Armengaud J.	Proteomics	10.1002/pmic.201400562	2015
Metabolism	Crystal structures of gamma-glutamylmethylamide synthetase provide insight into bacterial metabolism of oceanic monomethylamine.	Wang N, Chen XL, Gao C, Peng M, Wang P, Zhang N, Li F, Yang GP, Shen QT, Li S, Chen Y, Zhang YZ, Li CY.	J Biol Chem	10.1074/jbc.ra120.015952	2021
Metabolism	FnrL and Three Dnr Regulators Are Used for the Metabolic Adaptation to Low Oxygen Tension in Dinoroseobacter shibae.	Ebert M, Laass S, Thurmer A, Roselius L, Eckweiler D, Daniel R, Hartig E, Jahn D.	Front Microbiol	10.3389/fmicb.2017.00642	2017
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Metabolism	Structure and function of a short LOV protein from the marine phototrophic bacterium Dinoroseobacter shibae.	Endres S, Granzin J, Circolone F, Stadler A, Krauss U, Drepper T, Svensson V, Knieps-Grunhagen E, Wirtz A, Cousin A, Tielen P, Willbold D, Jaeger KE, Batra-Safferling R.	BMC Microbiol	10.1186/s12866-015-0365-0	2015
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Metabolism	An Unprecedented Medium-Chain Diunsaturated N-acylhomoserine Lactone from Marine Roseobacter Group Bacteria.	Ziesche L, Wolter L, Wang H, Brinkhoff T, Pohlner M, Engelen B, Wagner-Dobler I, Schulz S.	Mar Drugs	10.3390/md17010020	2018
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Metabolism	PRODORIC2: the bacterial gene regulation database in 2018.	Eckweiler D, Dudek CA, Hartlich J, Brotje D, Jahn D.	Nucleic Acids Res	10.1093/nar/gkx1091	2018
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Transcriptome	Transcriptional Analysis of Microcystis aeruginosa Co-Cultured with Algicidal Bacteria Brevibacillus laterosporus.	Zhang Y, Chen D, Zhang N, Li F, Luo X, Li Q, Li C, Huang X.	Int J Environ Res Public Health	10.3390/ijerph18168615	2021
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Metabolism	Biofilm plasmids with a rhamnose operon are widely distributed determinants of the 'swim-or-stick' lifestyle in roseobacters.	Michael V, Frank O, Bartling P, Scheuner C, Goker M, Brinkmann H, Petersen J.	ISME J	10.1038/ismej.2016.30	2016
Metabolism	Transposon mutagenesis identified chromosomal and plasmid genes essential for adaptation of the marine bacterium Dinoroseobacter shibae to anaerobic conditions.	Ebert M, Laass S, Burghartz M, Petersen J, Kossmehl S, Wohlbrand L, Rabus R, Wittmann C, Tielen P, Jahn D.	J Bacteriol	10.1128/jb.00860-13	2013
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Metabolism	Elucidation of the Biosynthetic Pathway of Vitamin B Groups and Potential Secondary Metabolite Gene Clusters Via Genome Analysis of a Marine Bacterium Pseudoruegeria sp. M32A2M.	Cho SH, Lee E, Ko SR, Jin S, Song Y, Ahn CY, Oh HM, Cho BK, Cho S.	J Microbiol Biotechnol	10.4014/jmb.1911.11006	2020
Phylogeny	Role of Bacterial Community Composition as a Driver of the Small-Sized Phytoplankton Community Structure in a Productive Coastal System.	Costas-Selas C, Martinez-Garcia S, Logares R, Hernandez-Ruiz M, Teira E.	Microb Ecol	10.1007/s00248-022-02125-2	2023
Genetics	Connection Between Chromosomal Location and Function of CtrA Phosphorelay Genes in Alphaproteobacteria.	Tomasch J, Koppenhofer S, Lang AS.	Front Microbiol	10.3389/fmicb.2021.662907	2021
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Metabolism	Large-Scale 13C flux profiling reveals conservation of the Entner-Doudoroff pathway as a glycolytic strategy among marine bacteria that use glucose.	Klingner A, Bartsch A, Dogs M, Wagner-Dobler I, Jahn D, Simon M, Brinkhoff T, Becker J, Wittmann C.	Appl Environ Microbiol	10.1128/aem.03157-14	2015
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Enzymology	Recovery and purification of bikaverin produced by Fusarium oxysporum CCT7620.	Mendonca M, Santos MCD, Pereira AK, Fill TP, Forte MBS, Bicas JL.	Food Chem X	10.1016/j.fochx.2021.100136	2021
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Enzymology	Identification, cloning, and expression of L-amino acid oxidase from marine Pseudoalteromonas sp. B3.	Yu Z, Zhou N, Qiao H, Qiu J.	ScientificWorldJournal	10.1155/2014/979858	2014
Metabolism	A promising approach to enhance microalgae productivity by exogenous supply of vitamins.	Tandon P, Jin Q, Huang L.	Microb Cell Fact	10.1186/s12934-017-0834-2	2017
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Metabolism	Transcriptional response of the photoheterotrophic marine bacterium Dinoroseobacter shibae to changing light regimes.	Tomasch J, Gohl R, Bunk B, Diez MS, Wagner-Dobler I.	ISME J	10.1038/ismej.2011.68	2011
Phylogeny	The microbiome of the dinoflagellate Prorocentrum cordatum in laboratory culture and its changes at higher temperatures.	Sanchez-Garcia S, Wang H, Wagner-Dobler I.	Front Microbiol	10.3389/fmicb.2022.952238	2022
Metabolism	Characterization of a Novel N-Acylhomoserine Lactonase RmmL from Ruegeria mobilis YJ3.	Cai X, Yu M, Shan H, Tian X, Zheng Y, Xue C, Zhang XH.	Mar Drugs	10.3390/md16100370	2018
Genetics	Biosynthesis of Saxitoxin in Marine Dinoflagellates: An Omics Perspective.	Akbar MA, Mohd Yusof NY, Tahir NI, Ahmad A, Usup G, Sahrani FK, Bunawan H.	Mar Drugs	10.3390/md18020103	2020
	Loss of the Rhodobacter capsulatus Serine Acetyl Transferase Gene, cysE1, Impairs Gene Transfer by Gene Transfer Agents and Biofilm Phenotypes.	Sherlock D, Fogg PCM.	Appl Environ Microbiol	10.1128/aem.00944-22	2022
	Class II LitR serves as an effector of "short" LOV-type blue-light photoreceptor in Pseudomonas mendocina.	Maruyama T, Sumi S, Kobayashi M, Ebuchi T, Kanesaki Y, Yoshikawa H, Ueda K, Takano H.	Sci Rep	10.1038/s41598-022-26254-3	2022
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Metabolism	A widely distributed phosphate-insensitive phosphatase presents a route for rapid organophosphorus remineralization in the biosphere.	Lidbury IDEA, Scanlan DJ, Murphy ARJ, Christie-Oleza JA, Aguilo-Ferretjans MM, Hitchcock A, Daniell TJ.	Proc Natl Acad Sci U S A	10.1073/pnas.2118122119	2022
Enzymology	Proteomic responses of Roseobacter litoralis OCh149 to starvation and light regimen.	Zong R, Jiao N.	Microbes Environ	10.1264/jsme2.me12029	2012
Metabolism	CceR and AkgR regulate central carbon and energy metabolism in alphaproteobacteria.	Imam S, Noguera DR, Donohue TJ.	mBio	10.1128/mbio.02461-14	2015
Metabolism	Isotopically labeled sulfur compounds and synthetic selenium and tellurium analogues to study sulfur metabolism in marine bacteria.	Brock NL, Citron CA, Zell C, Berger M, Wagner-Dobler I, Petersen J, Brinkhoff T, Simon M, Dickschat JS.	Beilstein J Org Chem	10.3762/bjoc.9.108	2013
Metabolism	Convergent evolution of zoonotic Brucella species toward the selective use of the pentose phosphate pathway.	Machelart A, Willemart K, Zuniga-Ripa A, Godard T, Plovier H, Wittmann C, Moriyon I, De Bolle X, Van Schaftingen E, Letesson JJ, Barbier T.	Proc Natl Acad Sci U S A	10.1073/pnas.2008939117	2020
Phylogeny	Three Novel Bacteria Associated with Two Centric Diatom Species from the Mediterranean Sea, Thalassiosira rotula and Skeletonema marinoi.	Di Costanzo F, Di Dato V, van Zyl LJ, Cutignano A, Esposito F, Trindade M, Romano G.	Int J Mol Sci	10.3390/ijms222413199	2021
	Exploring the onset of B₁₂ -based mutualisms using a recently evolved Chlamydomonas auxotroph and B₁₂ -producing bacteria.	Bunbury F, Deery E, Sayer AP, Bhardwaj V, Harrison EL, Warren MJ, Smith AG.	Environ Microbiol	10.1111/1462-2920.16035	2022
Metabolism	Regulation of the Erythrobacter litoralis DSM 8509 general stress response by visible light.	Fiebig A, Varesio LM, Alejandro Navarreto X, Crosson S.	Mol Microbiol	10.1111/mmi.14310	2019
	Quorum Sensing System of Ruegeria mobilis Rm01 Controls Lipase and Biofilm Formation.	Su Y, Tang K, Liu J, Wang Y, Zheng Y, Zhang XH.	Front Microbiol	10.3389/fmicb.2018.03304	2018
	Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans.	Teng ZJ, Qin QL, Zhang W, Li J, Fu HH, Wang P, Lan M, Luo G, He J, McMinn A, Wang M, Chen XL, Zhang YZ, Chen Y, Li CY.	Microbiome	10.1186/s40168-021-01153-3	2021
	Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics.	Price MN, Zane GM, Kuehl JV, Melnyk RA, Wall JD, Deutschbauer AM, Arkin AP.	PLoS Genet	10.1371/journal.pgen.1007147	2018
Enzymology	Distribution and origin of oxygen-dependent and oxygen-independent forms of Mg-protoporphyrin monomethylester cyclase among phototrophic proteobacteria.	Boldareva-Nuianzina EN, Blahova Z, Sobotka R, Koblizek M.	Appl Environ Microbiol	10.1128/aem.00104-13	2013
Metabolism	Biotechnological Enhancement of Probiotics through Co-Cultivation with Algae: Future or a Trend?	Perkovic L, Djedovic E, Vujovic T, Bakovic M, Paradzik T, Coz-Rakovac R.	Mar Drugs	10.3390/md20020142	2022
Metabolism	Improvement of Euglena gracilis Paramylon Production through a Cocultivation Strategy with the Indole-3-Acetic Acid-Producing Bacterium Vibrio natriegens.	Kim JY, Oh JJ, Jeon MS, Kim GH, Choi YE.	Appl Environ Microbiol	10.1128/aem.01548-19	2019
Phylogeny	The Vitamin B1 and B12 Required by the Marine Dinoflagellate Lingulodinium polyedrum Can be Provided by its Associated Bacterial Community in Culture.	Cruz-Lopez R, Maske H.	Front Microbiol	10.3389/fmicb.2016.00560	2016
	Genomic diversity of bacteriophages infecting Rhodobacter capsulatus and their relatedness to its gene transfer agent RcGTA.	Rapala J, Miller B, Garcia M, Dolan M, Bockman M, Hansson M, Russell DA, Garlena RA, Cresawn SG, Westbye AB, Beatty JT, Alvey RM, Bollivar DW.	PLoS One	10.1371/journal.pone.0255262	2021
Enzymology	The first virally encoded cytochrome p450.	Lamb DC, Lei L, Warrilow AG, Lepesheva GI, Mullins JG, Waterman MR, Kelly SL.	J Virol	10.1128/jvi.00289-09	2009
Metabolism	Acyl-homoserine lactone quorum sensing in the Roseobacter clade.	Zan J, Liu Y, Fuqua C, Hill RT.	Int J Mol Sci	10.3390/ijms15010654	2014
Metabolism	Gene clusters involved in isethionate degradation by terrestrial and marine bacteria.	Weinitschke S, Sharma PI, Stingl U, Cook AM, Smits TH.	Appl Environ Microbiol	10.1128/aem.01818-09	2010
Metabolism	Diel changes and diversity of pufM expression in freshwater communities of anoxygenic phototrophic bacteria.	Fecskeova LK, Piwosz K, Hanusova M, Nedoma J, Znachor P, Koblizek M.	Sci Rep	10.1038/s41598-019-55210-x	2019
Phylogeny	Phylogeny of Anoxygenic Photosynthesis Based on Sequences of Photosynthetic Reaction Center Proteins and a Key Enzyme in Bacteriochlorophyll Biosynthesis, the Chlorophyllide Reductase.	Imhoff JF, Rahn T, Kunzel S, Neulinger SC.	Microorganisms	10.3390/microorganisms7110576	2019
	Evaluation of the Production of Dissolved Organic Matter by Three Marine Bacterial Strains.	Goto S, Tada Y, Suzuki K, Yamashita Y.	Front Microbiol	10.3389/fmicb.2020.584419	2020
	The archetypal gene transfer agent RcGTA is regulated via direct interaction with the enigmatic RNA polymerase omega subunit.	Sherlock D, Fogg PCM.	Cell Rep	10.1016/j.celrep.2022.111183	2022
Metabolism	Microbial degradation of furanic compounds: biochemistry, genetics, and impact.	Wierckx N, Koopman F, Ruijssenaars HJ, de Winde JH.	Appl Microbiol Biotechnol	10.1007/s00253-011-3632-5	2011
Transcriptome	A dual-species co-cultivation system to study the interactions between Roseobacters and dinoflagellates.	Wang H, Tomasch J, Jarek M, Wagner-Dobler I.	Front Microbiol	10.3389/fmicb.2014.00311	2014
	Identification of a Novel Class of Photolyases as Possible Ancestors of Their Family.	Xu L, Chen S, Wen B, Shi H, Chi C, Liu C, Wang K, Tao X, Wang M, Lv J, Yan L, Ling L, Zhu G.	Mol Biol Evol	10.1093/molbev/msab191	2021
Phylogeny	Machine-Learning Classification Suggests That Many Alphaproteobacterial Prophages May Instead Be Gene Transfer Agents.	Kogay R, Neely TB, Birnbaum DP, Hankel CR, Shakya M, Zhaxybayeva O.	Genome Biol Evol	10.1093/gbe/evz206	2019
	Escherichia coli O-Antigen Gene Clusters of Serogroups O62, O68, O131, O140, O142, and O163: DNA Sequences and Similarity between O62 and O68, and PCR-Based Serogrouping.	Liu Y, Yan X, DebRoy C, Fratamico PM, Needleman DS, Li RW, Wang W, Losada L, Brinkac L, Radune D, Toro M, Hegde N, Meng J.	Biosensors (Basel)	10.3390/bios5010051	2015
	Chlorophyll biosynthesis gene evolution indicates photosystem gene duplication, not photosystem merger, at the origin of oxygenic photosynthesis.	Sousa FL, Shavit-Grievink L, Allen JF, Martin WF.	Genome Biol Evol	10.1093/gbe/evs127	2013
Metabolism	Identification of an apiosyltransferase in the plant pathogen Xanthomonas pisi.	Smith JA, Bar-Peled M.	PLoS One	10.1371/journal.pone.0206187	2018
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Enzymology	EnzymeDetector: an integrated enzyme function prediction tool and database.	Quester S, Schomburg D.	BMC Bioinformatics	10.1186/1471-2105-12-376	2011
Enzymology	Two new cholic acid derivatives from the marine ascidian-associated bacterium Hasllibacter halocynthiae.	Kim SH, Shin YK, Sohn YC, Kwon HC.	Molecules	10.3390/molecules171012357	2012
Metabolism	Genomes and virulence factors of novel bacterial pathogens causing bleaching disease in the marine red alga Delisea pulchra.	Fernandes N, Case RJ, Longford SR, Seyedsayamdost MR, Steinberg PD, Kjelleberg S, Thomas T.	PLoS One	10.1371/journal.pone.0027387	2011
	Genome sequence of the Litoreibacter arenae type strain (DSM 19593(T)), a member of the Roseobacter clade isolated from sea sand.	Riedel T, Fiebig A, Petersen J, Gronow S, Kyrpides NC, Goker M, Klenk HP.	Stand Genomic Sci	10.4056/sigs.4258318	2013
	Thermodynamic matchers for the construction of the cuckoo RNA family.	Reinkensmeier J, Giegerich R.	RNA Biol	10.1080/15476286.2015.1017206	2015
Phylogeny	A novel roseobacter phage possesses features of podoviruses, siphoviruses, prophages and gene transfer agents.	Zhan Y, Huang S, Voget S, Simon M, Chen F.	Sci Rep	10.1038/srep30372	2016
	Aerobic Anoxygenic Phototrophic Bacteria Promote the Development of Biological Soil Crusts.	Tang K, Jia L, Yuan B, Yang S, Li H, Meng J, Zeng Y, Feng F.	Front Microbiol	10.3389/fmicb.2018.02715	2018
	Complete genome sequence of the bacteriochlorophyll a-containing Roseibacterium elongatum type strain (DSM 19469(T)), a representative of the Roseobacter group isolated from Australian coast sand.	Riedel T, Fiebig A, Goker M, Klenk HP.	Stand Genomic Sci	10.4056/sigs.5541028	2014
Phylogeny	Widespread occurrence of secondary lipid biosynthesis potential in microbial lineages.	Shulse CN, Allen EE.	PLoS One	10.1371/journal.pone.0020146	2011
Phylogeny	Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm.	Michaud JM, Thompson LR, Kaul D, Espinoza JL, Richter RA, Xu ZZ, Lee C, Pham KM, Beall CM, Malfatti F, Azam F, Knight R, Burkart MD, Dupont CL, Prather KA.	Nat Commun	10.1038/s41467-018-04409-z	2018
	Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis.	Kalhoefer D, Thole S, Voget S, Lehmann R, Liesegang H, Wollher A, Daniel R, Simon M, Brinkhoff T.	BMC Genomics	10.1186/1471-2164-12-324	2011
	Adaptation to Photooxidative Stress: Common and Special Strategies of the Alphaproteobacteria Rhodobacter sphaeroides and Rhodobacter capsulatus.	Licht MK, Nuss AM, Volk M, Konzer A, Beckstette M, Berghoff BA, Klug G.	Microorganisms	10.3390/microorganisms8020283	2020
Genetics	High Potential for Secondary Metabolite Production of Paracoccus marcusii CP157, Isolated From the Crustacean Cancer pagurus.	Leinberger J, Holste J, Bunk B, Freese HM, Sproer C, Dlugosch L, Kuck AC, Schulz S, Brinkhoff T.	Front Microbiol	10.3389/fmicb.2021.688754	2021
	Large Diversity and Original Structures of Acyl-Homoserine Lactones in Strain MOLA 401, a Marine Rhodobacteraceae Bacterium.	Doberva M, Stien D, Sorres J, Hue N, Sanchez-Ferandin S, Eparvier V, Ferandin Y, Lebaron P, Lami R.	Front Microbiol	10.3389/fmicb.2017.01152	2017
	The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants.	Li L, Wang S, Wang H, Sahu SK, Marin B, Li H, Xu Y, Liang H, Li Z, Cheng S, Reder T, Cebi Z, Wittek S, Petersen M, Melkonian B, Du H, Yang H, Wang J, Wong GK, Xu X, Liu X, Van de Peer Y, Melkonian M, Liu H.	Nat Ecol Evol	10.1038/s41559-020-1221-7	2020
Metabolism	The fate of lysine: Non-targeted stable isotope analysis reveals parallel ways for lysine catabolization in Phaeobacter inhibens.	Reimer LC, Will SE, Schomburg D.	PLoS One	10.1371/journal.pone.0186395	2017
	Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686.	Dziewit L, Czarnecki J, Prochwicz E, Wibberg D, Schluter A, Puhler A, Bartosik D.	Front Microbiol	10.3389/fmicb.2015.00852	2015
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Enzymology	The Role of Membranes and Lipid-Protein Interactions in the Mg-Branch of Tetrapyrrole Biosynthesis.	Solymosi K, Mysliwa-Kurdziel B.	Front Plant Sci	10.3389/fpls.2021.663309	2021
Metabolism	Morphological Heterogeneity and Attachment of Phaeobacter inhibens.	Segev E, Tellez A, Vlamakis H, Kolter R.	PLoS One	10.1371/journal.pone.0141300	2015
	Diversity of purple nonsulfur bacteria in shrimp ponds with varying mercury levels.	Mukkata K, Kantachote D, Wittayaweerasak B, Techkarnjanaruk S, Boonapatcharoen N.	Saudi J Biol Sci	10.1016/j.sjbs.2015.05.014	2016
	Filling gaps in bacterial catabolic pathways with computation and high-throughput genetics.	Price MN, Deutschbauer AM, Arkin AP.	PLoS Genet	10.1371/journal.pgen.1010156	2022
	Genomic, physiologic, and proteomic insights into metabolic versatility in Roseobacter clade bacteria isolated from deep-sea water.	Tang K, Yang Y, Lin D, Li S, Zhou W, Han Y, Liu K, Jiao N.	Sci Rep	10.1038/srep35528	2016
Metabolism	Cyanobacteria and Eukaryotic Algae Use Different Chemical Variants of Vitamin B12.	Helliwell KE, Lawrence AD, Holzer A, Kudahl UJ, Sasso S, Krautler B, Scanlan DJ, Warren MJ, Smith AG.	Curr Biol	10.1016/j.cub.2016.02.041	2016
Metabolism	Cyclic di-GMP-Mediated Regulation of Gene Transfer and Motility in Rhodobacter capsulatus.	Pallegar P, Pena-Castillo L, Langille E, Gomelsky M, Lang AS.	J Bacteriol	10.1128/jb.00554-19	2020
Phylogeny	Correlating carbon monoxide oxidation with cox genes in the abundant Marine Roseobacter Clade.	Cunliffe M.	ISME J	10.1038/ismej.2010.170	2011
Genetics	CO dehydrogenase genes found in metagenomic fosmid clones from the deep mediterranean sea.	Martin-Cuadrado AB, Ghai R, Gonzaga A, Rodriguez-Valera F.	Appl Environ Microbiol	10.1128/aem.01283-09	2009
Metabolism	Phylogenomic analysis of marine Roseobacters.	Tang K, Huang H, Jiao N, Wu CH.	PLoS One	10.1371/journal.pone.0011604	2010
Pathogenicity	Evidence for quorum sensing and differential metabolite production by a marine bacterium in response to DMSP.	Johnson WM, Kido Soule MC, Kujawinski EB.	ISME J	10.1038/ismej.2016.6	2016
Metabolism	Metagenomic Signatures of Bacterial Adaptation to Life in the Phyllosphere of a Salt-Secreting Desert Tree.	Finkel OM, Delmont TO, Post AF, Belkin S.	Appl Environ Microbiol	10.1128/aem.00483-16	2016
Genetics	Ecological Genomics of the Uncultivated Marine Roseobacter Lineage CHAB-I-5.	Zhang Y, Sun Y, Jiao N, Stepanauskas R, Luo H.	Appl Environ Microbiol	10.1128/aem.03678-15	2016
	Lengths of Orthologous Prokaryotic Proteins Are Affected by Evolutionary Factors.	Tatarinova T, Salih B, Dien Bard J, Cohen I, Bolshoy A.	Biomed Res Int	10.1155/2015/786861	2015
	Bacterial Associates Modify Growth Dynamics of the Dinoflagellate Gymnodinium catenatum.	Bolch CJS, Bejoy TA, Green DH.	Front Microbiol	10.3389/fmicb.2017.00670	2017
	Expanding the Regulon of the Bradyrhizobium diazoefficiens NnrR Transcription Factor: New Insights Into the Denitrification Pathway.	Jimenez-Leiva A, Cabrera JJ, Bueno E, Torres MJ, Salazar S, Bedmar EJ, Delgado MJ, Mesa S.	Front Microbiol	10.3389/fmicb.2019.01926	2019
Metabolism	The Entner-Doudoroff and Nonoxidative Pentose Phosphate Pathways Bypass Glycolysis and the Oxidative Pentose Phosphate Pathway in Ralstonia solanacearum.	Jyoti P, Jyoti P, Shree M, Joshi C, Prakash T, Ray SK, Satapathy SS, Masakapalli SK.	mSystems	10.1128/msystems.00091-20	2020
Enzymology	Detection of antimicrobial resistance genes associated with the International Space Station environmental surfaces.	Urbaniak C, Sielaff AC, Frey KG, Allen JE, Singh N, Jaing C, Wheeler K, Venkateswaran K.	Sci Rep	10.1038/s41598-017-18506-4	2018
	Evolution of Bacterial Gene Transfer Agents.	Redfield RJ, Soucy SM.	Front Microbiol	10.3389/fmicb.2018.02527	2018
Metabolism	An optogenetic toolbox of LOV-based photosensitizers for light-driven killing of bacteria.	Endres S, Wingen M, Torra J, Ruiz-Gonzalez R, Polen T, Bosio G, Bitzenhofer NL, Hilgers F, Gensch T, Nonell S, Jaeger KE, Drepper T.	Sci Rep	10.1038/s41598-018-33291-4	2018
	The Biogeographical Distribution of Benthic Roseobacter Group Members along a Pacific Transect Is Structured by Nutrient Availability within the Sediments and Primary Production in Different Oceanic Provinces.	Pohlner M, Degenhardt J, von Hoyningen-Huene AJE, Wemheuer B, Erlmann N, Schnetger B, Badewien TH, Engelen B.	Front Microbiol	10.3389/fmicb.2017.02550	2017
Metabolism	Architecture of divergent flagellar promoters controlled by CtrA in Rhodobacter sphaeroides.	Rivera-Osorio A, Osorio A, Poggio S, Dreyfus G, Camarena L.	BMC Microbiol	10.1186/s12866-018-1264-y	2018
Genetics	Trajectories and Drivers of Genome Evolution in Surface-Associated Marine Phaeobacter.	Freese HM, Sikorski J, Bunk B, Scheuner C, Meier-Kolthoff JP, Sproer C, Gram L, Overmann J.	Genome Biol Evol	10.1093/gbe/evx249	2017
	Marinobacter Dominates the Bacterial Community of the Ostreococcus tauri Phycosphere in Culture.	Lupette J, Lami R, Krasovec M, Grimsley N, Moreau H, Piganeau G, Sanchez-Ferandin S.	Front Microbiol	10.3389/fmicb.2016.01414	2016
Genetics	Surface colonization by marine roseobacters: integrating genotype and phenotype.	Slightom RN, Buchan A.	Appl Environ Microbiol	10.1128/aem.01508-09	2009
	Bacterial lifestyle switch in response to algal metabolites.	Barak-Gavish N, Dassa B, Kuhlisch C, Nussbaum I, Brandis A, Rosenberg G, Avraham R, Vardi A.	Elife	10.7554/elife.84400	2023
Metabolism	The functional potential of microbial communities in hydraulic fracturing source water and produced water from natural gas extraction characterized by metagenomic sequencing.	Mohan AM, Bibby KJ, Lipus D, Hammack RW, Gregory KB.	PLoS One	10.1371/journal.pone.0107682	2014
Metabolism	Direct exchange of vitamin B12 is demonstrated by modelling the growth dynamics of algal-bacterial cocultures.	Grant MA, Kazamia E, Cicuta P, Smith AG.	ISME J	10.1038/ismej.2014.9	2014
Phylogeny	Bacterial Diversity Associated with the Coccolithophorid Algae Emiliania huxleyi and Coccolithus pelagicus f. braarudii.	Green DH, Echavarri-Bravo V, Brennan D, Hart MC.	Biomed Res Int	10.1155/2015/194540	2015
Metabolism	Extensive Identification of Bacterial Riboflavin Transporters and Their Distribution across Bacterial Species.	Gutierrez-Preciado A, Torres AG, Merino E, Bonomi HR, Goldbaum FA, Garcia-Angulo VA.	PLoS One	10.1371/journal.pone.0126124	2015
	Genome sequence of the Roseovarius mucosus type strain (DSM 17069(T)), a bacteriochlorophyll a-containing representative of the marine Roseobacter group isolated from the dinoflagellate Alexandrium ostenfeldii.	Riedel T, Spring S, Fiebig A, Scheuner C, Petersen J, Goker M, Klenk HP.	Stand Genomic Sci	10.1186/1944-3277-10-17	2015
Enzymology	The Protease ClpXP and the PAS Domain Protein DivL Regulate CtrA and Gene Transfer Agent Production in Rhodobacter capsulatus.	Westbye AB, Kater L, Wiesmann C, Ding H, Yip CK, Beatty JT.	Appl Environ Microbiol	10.1128/aem.00275-18	2018
Metabolism	Carbohydrate metabolism and carbon fixation in Roseobacter denitrificans OCh114.	Tang KH, Feng X, Tang YJ, Blankenship RE.	PLoS One	10.1371/journal.pone.0007233	2009
Phylogeny	Adaptation of an abundant Roseobacter RCA organism to pelagic systems revealed by genomic and transcriptomic analyses.	Voget S, Wemheuer B, Brinkhoff T, Vollmers J, Dietrich S, Giebel HA, Beardsley C, Sardemann C, Bakenhus I, Billerbeck S, Daniel R, Simon M.	ISME J	10.1038/ismej.2014.134	2015
	Towards a more accurate annotation of tyrosine-based site-specific recombinases in bacterial genomes.	Van Houdt R, Leplae R, Lima-Mendez G, Mergeay M, Toussaint A.	Mob DNA	10.1186/1759-8753-3-6	2012
Metabolism	Manganese uptake in marine bacteria; the novel MntX transporter is widespread in Roseobacters, Vibrios, Alteromonadales and the SAR11 and SAR116 clades.	Green RT, Todd JD, Johnston AW.	ISME J	10.1038/ismej.2012.140	2013
Metabolism	The biosynthetic gene cluster of zorbamycin, a member of the bleomycin family of antitumor antibiotics, from Streptomyces flavoviridis ATCC 21892.	Galm U, Wendt-Pienkowski E, Wang L, George NP, Oh TJ, Yi F, Tao M, Coughlin JM, Shen B.	Mol Biosyst	10.1039/b814075h	2009
Enzymology	NirN protein from Pseudomonas aeruginosa is a novel electron-bifurcating dehydrogenase catalyzing the last step of heme d1 biosynthesis.	Adamczack J, Hoffmann M, Papke U, Haufschildt K, Nicke T, Broring M, Sezer M, Weimar R, Kuhlmann U, Hildebrandt P, Layer G.	J Biol Chem	10.1074/jbc.m114.603886	2014
Metabolism	Distribution and properties of the genes encoding the biosynthesis of the bacterial cofactor, pyrroloquinoline quinone.	Shen YQ, Bonnot F, Imsand EM, RoseFigura JM, Sjolander K, Klinman JP.	Biochemistry	10.1021/bi201763d	2012
	Characterization of Lhr-Core DNA helicase and manganese- dependent DNA nuclease components of a bacterial gene cluster encoding nucleic acid repair enzymes.	Ejaz A, Shuman S.	J Biol Chem	10.1074/jbc.ra118.005296	2018
Enzymology	Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase.	Chen Y, Patel NA, Crombie A, Scrivens JH, Murrell JC.	Proc Natl Acad Sci U S A	10.1073/pnas.1112928108	2011
Genetics	High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.	Christie-Oleza JA, Miotello G, Armengaud J.	BMC Genomics	10.1186/1471-2164-13-73	2012
Metabolism	Rhodobacterales use a unique L-threonine kinase for the assembly of the nucleotide loop of coenzyme B₁₂.	Tavares NK, VanDrisse CM, Escalante-Semerena JC.	Mol Microbiol	10.1111/mmi.14100	2018
Metabolism	Mixotrophic growth of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria is carbon-starvation independent and correlates with the type of carbon source and oxygen availability.	Spring S, Riedel T.	BMC Microbiol	10.1186/1471-2180-13-117	2013
Metabolism	Plasmids of carotenoid-producing Paracoccus spp. (Alphaproteobacteria) - structure, diversity and evolution.	Maj A, Dziewit L, Czarnecki J, Wlodarczyk M, Baj J, Skrzypczyk G, Giersz D, Bartosik D.	PLoS One	10.1371/journal.pone.0080258	2013
Enzymology	Changes in dimethylsulfoniopropionate demethylase gene assemblages in response to an induced phytoplankton bloom.	Howard EC, Sun S, Reisch CR, del Valle DA, Burgmann H, Kiene RP, Moran MA.	Appl Environ Microbiol	10.1128/aem.01457-10	2011
	Methods of combinatorial optimization to reveal factors affecting gene length.	Bolshoy A, Tatarinova T.	Bioinform Biol Insights	10.4137/bbi.s10525	2012
Metabolism	Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake.	Yau S, Lauro FM, Williams TJ, Demaere MZ, Brown MV, Rich J, Gibson JA, Cavicchioli R.	ISME J	10.1038/ismej.2013.69	2013
Metabolism	Regulatory and functional diversity of methylmercaptopropionate coenzyme A ligases from the dimethylsulfoniopropionate demethylation pathway in Ruegeria pomeroyi DSS-3 and other proteobacteria.	Bullock HA, Reisch CR, Burns AS, Moran MA, Whitman WB.	J Bacteriol	10.1128/jb.00026-14	2014
Genetics	Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life.	Thole S, Kalhoefer D, Voget S, Berger M, Engelhardt T, Liesegang H, Wollherr A, Kjelleberg S, Daniel R, Simon M, Thomas T, Brinkhoff T.	ISME J	10.1038/ismej.2012.62	2012
	Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae.	Hunsperger HM, Randhawa T, Cattolico RA.	BMC Evol Biol	10.1186/s12862-015-0286-4	2015
	Potential Emergence of Multi-quorum Sensing Inhibitor Resistant (MQSIR) Bacteria.	Koul S, Prakash J, Mishra A, Kalia VC.	Indian J Microbiol	10.1007/s12088-015-0558-0	2016
Metabolism	On the dynamics of the adenylate energy system: homeorhesis vs homeostasis.	De la Fuente IM, Cortes JM, Valero E, Desroches M, Rodrigues S, Malaina I, Martinez L.	PLoS One	10.1371/journal.pone.0108676	2014
Phylogeny	Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton.	Milici M, Deng ZL, Tomasch J, Decelle J, Wos-Oxley ML, Wang H, Jauregui R, Plumeier I, Giebel HA, Badewien TH, Wurst M, Pieper DH, Simon M, Wagner-Dobler I.	Front Microbiol	10.3389/fmicb.2016.00649	2016
Genetics	Information theoretic perspective on genome clustering.	Veluchamy A, Mehta P, Srividhya KV, Vikram H, Govind MK, Gupta R, Aziz Bin Dukhyil A, Abdullah Alharbi R, Abdullah Aloyuni S, Hassan MM, Krishnaswamy S.	Saudi J Biol Sci	10.1016/j.sjbs.2020.12.039	2021
Genetics	Poles apart: Arctic and Antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin.	Vollmers J, Voget S, Dietrich S, Gollnow K, Smits M, Meyer K, Brinkhoff T, Simon M, Daniel R.	PLoS One	10.1371/journal.pone.0063422	2013
Metabolism	Ralstonia solanacearum uses inorganic nitrogen metabolism for virulence, ATP production, and detoxification in the oxygen-limited host xylem environment.	Dalsing BL, Truchon AN, Gonzalez-Orta ET, Milling AS, Allen C.	mBio	10.1128/mbio.02471-14	2015
Metabolism	Distribution and functions of TonB-dependent transporters in marine bacteria and environments: implications for dissolved organic matter utilization.	Tang K, Jiao N, Liu K, Zhang Y, Li S.	PLoS One	10.1371/journal.pone.0041204	2012
	Distribution of genes encoding nucleoid-associated protein homologs in plasmids.	Takeda T, Yun CS, Shintani M, Yamane H, Nojiri H.	Int J Evol Biol	10.4061/2011/685015	2011
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
	Aerobic anoxygenic phototrophic bacteria attached to particles in turbid waters of the Delaware and Chesapeake estuaries.	Waidner LA, Kirchman DL.	Appl Environ Microbiol	10.1128/aem.00592-07	2007
Metabolism	Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria.	Christie-Oleza JA, Pina-Villalonga JM, Bosch R, Nogales B, Armengaud J.	Mol Cell Proteomics	10.1074/mcp.m111.013110	2012
Metabolism	Gene duplications in prokaryotes can be associated with environmental adaptation.	Bratlie MS, Johansen J, Sherman BT, Huang da W, Lempicki RA, Drablos F.	BMC Genomics	10.1186/1471-2164-11-588	2010
	Evolution of the F0F1 ATP synthase complex in light of the patchy distribution of different bioenergetic pathways across prokaryotes.	Koumandou VL, Kossida S.	PLoS Comput Biol	10.1371/journal.pcbi.1003821	2014
Metabolism	Carbon metabolic pathways in phototrophic bacteria and their broader evolutionary implications.	Tang KH, Tang YJ, Blankenship RE.	Front Microbiol	10.3389/fmicb.2011.00165	2011
	Reconstruction of the core and extended regulons of global transcription factors.	Dufour YS, Kiley PJ, Donohue TJ.	PLoS Genet	10.1371/journal.pgen.1001027	2010
Metabolism	Nitrate and periplasmic nitrate reductases.	Sparacino-Watkins C, Stolz JF, Basu P.	Chem Soc Rev	10.1039/c3cs60249d	2014
Pathogenicity	Metabolism of chiral sulfonate compound 2,3-dihydroxypropane-1-sulfonate (DHPS) by Roseobacter bacteria in marine environment.	Chen X, Liu L, Gao X, Dai X, Han Y, Chen Q, Tang K	Environ Int	10.1016/j.envint.2021.106829	2021
Genetics	A newly isolated roseophage represents a distinct member of Siphoviridae family.	Cai L, Ma R, Chen H, Yang Y, Jiao N, Zhang R	Virol J	10.1186/s12985-019-1241-6	2019
Metabolism	Nitric oxide controls c-di-GMP turnover in Dinoroseobacter shibae.	Bedrunka P, Olbrisch F, Ruger M, Zehner S, Frankenberg-Dinkel N	Microbiology (Reading)	10.1099/mic.0.000714	2018
	Plasmid Transfer in the Ocean - A Case Study from the Roseobacter Group.	Petersen J, Wagner-Dobler I	Front Microbiol	10.3389/fmicb.2017.01350	2017
Metabolism	Heme and nitric oxide binding by the transcriptional regulator DnrF from the marine bacterium Dinoroseobacter shibae increases napD promoter affinity.	Ebert M, Schweyen P, Broring M, Laass S, Hartig E, Jahn D	J Biol Chem	10.1074/jbc.M117.798728	2017
Phylogeny	A Novel Roseosiphophage Isolated from the Oligotrophic South China Sea.	Yang Y, Cai L, Ma R, Xu Y, Tong Y, Huang Y, Jiao N, Zhang R	Viruses	10.3390/v9050109	2017
	Boosted Membrane Potential as Bioenergetic Response to Anoxia in Dinoroseobacter shibae.	Kirchhoff C, Cypionka H	Front Microbiol	10.3389/fmicb.2017.00695	2017
Metabolism	Fixation of CO2 using the ethylmalonyl-CoA pathway in the photoheterotrophic marine bacterium Dinoroseobacter shibae.	Bill N, Tomasch J, Riemer A, Muller K, Kleist S, Schmidt-Hohagen K, Wagner-Dobler I, Schomburg D	Environ Microbiol	10.1111/1462-2920.13746	2017
Metabolism	Dealing with salinity extremes and nitrogen limitation - an unexpected strategy of the marine bacterium Dinoroseobacter shibae.	Kleist S, Ulbrich M, Bill N, Schmidt-Hohagen K, Geffers R, Schomburg D	Environ Microbiol	10.1111/1462-2920.13266	2016
Genetics	Erratum to: 'Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12'.	Ji J, Zhang R, Jiao N	Stand Genomic Sci	10.1186/s40793-015-0056-3	2015
Genetics	Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12.	Ji J, Zhang R, Jiao N	Stand Genomic Sci	10.1186/1944-3277-10-6	2015
Genetics	Complete genome sequence of vB_DshP-R2C, a N4-like lytic roseophage.	Cai L, Yang Y, Jiao N, Zhang R	Mar Genomics	10.1016/j.margen.2015.03.005	2015
Genetics	Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12.	Ji J, Zhang R, Jiao N	Stand Genomic Sci	10.1186/1944-3277-9-31	2015
	Plasmid curing and the loss of grip--the 65-kb replicon of Phaeobacter inhibens DSM 17395 is required for biofilm formation, motility and the colonization of marine algae.	Frank O, Michael V, Pauker O, Boedeker C, Jogler C, Rohde M, Petersen J	Syst Appl Microbiol	10.1016/j.syapm.2014.12.001	2014
Enzymology	Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria.	Kaschner M, Loeschcke A, Krause J, Minh BQ, Heck A, Endres S, Svensson V, Wirtz A, von Haeseler A, Jaeger KE, Drepper T, Krauss U	Mol Microbiol	10.1111/mmi.12719	2014
Metabolism	Gene regulatory and metabolic adaptation processes of Dinoroseobacter shibae DFL12T during oxygen depletion.	Laass S, Kleist S, Bill N, Druppel K, Kossmehl S, Wohlbrand L, Rabus R, Klein J, Rohde M, Bartsch A, Wittmann C, Schmidt-Hohagen K, Tielen P, Jahn D, Schomburg D	J Biol Chem	10.1074/jbc.M113.545004	2014
Cultivation	Light enhances survival of Dinoroseobacter shibae during long-term starvation.	Soora M, Cypionka H	PLoS One	10.1371/journal.pone.0083960	2013
Metabolism	Swimming in light: a large-scale computational analysis of the metabolism of Dinoroseobacter shibae.	Rex R, Bill N, Schmidt-Hohagen K, Schomburg D	PLoS Comput Biol	10.1371/journal.pcbi.1003224	2013
Metabolism	Formation of polyhydroxyalkanoate in aerobic anoxygenic phototrophic bacteria and its relationship to carbon source and light availability.	Xiao N, Jiao N	Appl Environ Microbiol	10.1128/AEM.05955-11	2011
Metabolism	Genetic tools for the investigation of Roseobacter clade bacteria.	Piekarski T, Buchholz I, Drepper T, Schobert M, Wagner-Doebler I, Tielen P, Jahn D	BMC Microbiol	10.1186/1471-2180-9-265	2009
Genetics	The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.	Wagner-Dobler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, Cypionka H, Daniel R, Drepper T, Gerdts G, Hahnke S, Han C, Jahn D, Kalhoefer D, Kiss H, Klenk HP, Kyrpides N, Liebl W, Liesegang H, Meincke L, Pati A, Petersen J, Piekarski T, Pommerenke C, Pradella S, Pukall R, Rabus R, Stackebrandt E, Thole S, Thompson L, Tielen P, Tomasch J, von Jan M, Wanphrut N, Wichels A, Zech H, Simon M	ISME J	10.1038/ismej.2009.94	2009
	An alphaproteobacterium capable of both aerobic and anaerobic anoxygenic photosynthesis but incapable of photoautotrophy: Charonomicrobium ambiphototrophicum, gen. nov., sp. nov.	Csotonyi JT, Stackebrandt E, Swiderski J, Schumann P, Yurkov V.	Photosynth Res	10.1007/s11120-011-9629-1	2011
Phylogeny	Hasllibacter halocynthiae gen. nov., sp. nov., a nutriacholic acid-producing bacterium isolated from the marine ascidian Halocynthia roretzi.	Kim SH, Yang HO, Shin YK, Kwon HC.	Int J Syst Evol Microbiol	10.1099/ijs.0.028738-0	2012
Phylogeny	Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., comb. nov., and emendation of Chromatocurvus halotolerans.	Spring S, Riedel T, Sproer C, Yan S, Harder J, Fuchs BM.	BMC Microbiol	10.1186/1471-2180-13-118	2013
Phylogeny	Roseibacterium beibuensis sp. nov., a novel member of roseobacter clade isolated from Beibu Gulf in the South China Sea.	Mao Y, Wei J, Zheng Q, Xiao N, Li Q, Fu Y, Wang Y, Jiao N	Curr Microbiol	10.1007/s00284-012-0192-6	2012
Phylogeny	Wenxinia marina gen. nov., sp. nov., a novel member of the Roseobacter clade isolated from oilfield sediments of the South China Sea.	Ying JY, Wang BJ, Dai X, Yang SS, Liu SJ, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.64825-0	2007
Phylogeny	Dinoroseobacter shibae gen. nov., sp. nov., a new aerobic phototrophic bacterium isolated from dinoflagellates.	Biebl H, Allgaier M, Tindall BJ, Koblizek M, Lunsdorf H, Pukall R, Wagner-Dobler I	Int J Syst Evol Microbiol	10.1099/ijs.0.63511-0	2005

References

#6375	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16493
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27731	IJSEM 1089 2005 ( DOI 10.1099/ijs.0.63511-0 , PubMed 15879238 )
#31424	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27731
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dinoroseobacter shibae (DSM 16493, DFL 12)

Name and taxonomic classification

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Genome browser: GCA_000018145

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