Name: Cereibacter changlensis JA139
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13656

Type strain:

Species: Cereibacter changlensis

Strain Designation: JA139

Culture col. no.: DSM 18774, CCUG 53722, JCM 14338, BCRC 80280, KCTC 5728

Strain history: Ch. Sasikala JA139.

NCBI tax ID(s): 402884 (species)

Section

Cereibacter changlensis JA139 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from photoheterotrophic enrichments of a snow sample .

Gram-negative
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	Rhodobacteraceae
	Genus	*Cereibacter*
	Species	**Cereibacter changlensis**
	Full Scientific Name (LPSN)	Cereibacter changlensis (Anil Kumar et al. 2007) Suresh et al. 2015

	Synonym	"Gemmobacter* changlensis"*
	Synonym	Rhodobacter changlensis
	Synonym	Catellibacterium changlense

Information on morphological and physiological properties Morphology

[Ref.: #30689]	Gram stain	negative
[Ref.: #30689]	Cell shape	rod-shaped
[Ref.: #30689]	Motility	no

[Ref.: #32200]	Gram stain	negative
[Ref.: #32200]	Cell length	3 µm
[Ref.: #32200]	Cell width	0.9 µm
[Ref.: #32200]	Cell shape	ovoid-shaped
[Ref.: #32200]	Motility	no

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #32200]	Pigment production	yes
[Ref.: #30689]	Pigment production	yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30689]	growth	10-37 °C
[Ref.: #30689]	optimum	30 °C
[Ref.: #32200]	growth	05-32 °C
[Ref.: #32200]	optimum	29 °C
[Ref.: #59989]	growth	30 °C
[Ref.: #59989]	growth	25-30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #30689]	Temperature range	mesophilic
[Ref.: #32200]	Temperature range	mesophilic
[Ref.: #59989]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

		pH
[Ref.: #32200]	optimum	7
[Ref.: #30689]	optimum	6.5
[Ref.: #30689]	growth	06-09
[Ref.: #32200]	growth	6.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7691]	Oxygen tolerance	anaerobe
[Ref.: #32200]	Oxygen tolerance	facultative anaerobe
[Ref.: #30689]	Oxygen tolerance	facultative anaerobe
[Ref.: #59989]	Oxygen tolerance	aerobe
[Ref.: #59989]	Oxygen tolerance	anaerobe

[Ref.: #30689]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

	Salt		Salt conc.
[Ref.: #30689]	NaCl	growth	0-6	%
[Ref.: #32200]	NaCl	optimum	0.1	%
[Ref.: #30689]	NaCl	optimum	0.5	%

[Ref.: #32200]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30689]	arabinose ChEBI	+	carbon source
[Ref.: #30689]	esculin ChEBI	+	hydrolysis
[Ref.: #30689]	gluconate ChEBI	+	carbon source
[Ref.: #30689]	glucose ChEBI	+	carbon source
[Ref.: #32200]	glucose ChEBI	+	carbon source
[Ref.: #32200]	glutamate ChEBI	+	carbon source
[Ref.: #30689]	malate ChEBI	+	carbon source
[Ref.: #30689]	maltose ChEBI	+	carbon source
[Ref.: #30689]	mannitol ChEBI	+	carbon source
[Ref.: #32200]	mannitol ChEBI	+	carbon source
[Ref.: #30689]	mannose ChEBI	+	carbon source
[Ref.: #30689]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32200]	pyruvate ChEBI	+	carbon source
[Ref.: #32200]	sorbitol ChEBI	+	carbon source
[Ref.: #32200]	succinate ChEBI	+	carbon source
[Ref.: #30689]	tween 60 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30689]		alkaline phosphatase	+	3.1.3.1
[Ref.: #30689]		alpha-galactosidase	+	3.2.1.22

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7691]	Sample type/isolated from	photoheterotrophic enrichments of a snow sample (purple mat on ice)
[Ref.: #7691]	Geographic location (country and/or sea, region)	Himalayas, Changla Pass
[Ref.: #7691]	Country	India
[Ref.: #7691]	Country ISO 3 Code	IND
[Ref.: #7691]	Continent	Asia

[Ref.: #59989]	Sample type/isolated from	Snow,enrichment culture
[Ref.: #59989]	Sampling date	2006-08-08
[Ref.: #59989]	Geographic location (country and/or sea, region)	Ladakh,Changla pass of Himalayas
[Ref.: #59989]	Country	India
[Ref.: #59989]	Country ISO 3 Code	IND
[Ref.: #59989]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Snow sample from Changla Pass in the Indian Himalayas
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Aquatic	#Ice
#Environmental	#Microbial community	#Microbial mat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM399030 (>99% sequence identity) for Gemmobacter from Microbeatlas

Aquatic Samples	194
Soil Samples	83
Animal Samples	74
Plant Samples	53
Total Samples	404

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7691]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7691]	Rhodobacter changlensis 16S rRNA gene, type strain JA139T	AM399030	1380	ENA	1188249 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cereibacter changlensis JA139 JA139	GCA_003034985	contig	GenBank	1188249 tax ID
[Ref.: #67770]	Cereibacter changlensis DSM 18774	GCA_003254335	scaffold	GenBank	402884 tax ID
[Ref.: #66792]	Cereibacter changlensis JA139	1188249.3	wgs	PATRIC	1188249 tax ID	*
[Ref.: #66792]	Cereibacter changlensis strain DSM 18774	402884.4	wgs	PATRIC	402884 tax ID	*
[Ref.: #66792]	Cereibacter changlensis DSM 18774	2593339283	draft	JGI IMG/M	402884 tax ID	*

[Ref.: #7691]	GC-content	69.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32200]	GC-content	69.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cereibacter changlensis DSM 18774 NCBI: GCA_003254335.1
[Ref.: #69480]	anaerobic	no	98.161	no
[Ref.: #69480]	spore-forming	no	99.993	yes
[Ref.: #69480]	gram-positive	no	99.997	yes
[Ref.: #69480]	thermophile	no	99.754	no
[Ref.: #69480]	motile	no	60.287	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cereibacter changlensis DSM 18774 NCBI: GCA_003254335.1
[Ref.: #69481]	spore-forming	no	82	no

Availability in culture collections External links

[Ref.: #7691]

Culture collection no.

DSM 18774, CCUG 53722, JCM 14338, BCRC 80280, KCTC 5728

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Gemmobacter fontiphilus sp. nov., isolated from a freshwater spring, reclassification of Catellibacterium nectariphilum as Gemmobacter nectariphilus comb. nov., Catellibacterium changlense as Gemmobacter changlensis comb. nov., Catellibacterium aquatile as Gemmobacter aquaticus nom. nov., Catellibacterium caeni as Gemmobacter caeni comb. nov., Catellibacterium nanjingense as Gemmobacter nanjingensis comb. nov., and emended description of the genus Gemmobacter and of Gemmobacter aquatilis.	Chen WM, Cho NT, Huang WC, Young CC, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijs.0.042051-0	2012	*
Phylogeny	Description of Catellibacterium caeni sp. nov., reclassification of Rhodobacter changlensis Anil Kumar et al. 2007 as Catellibacterium changlense comb. nov. and emended description of the genus Catellibacterium.	Zheng JW, Chen YG, Zhang J, Ni YY, Li WJ, He J, Li SP	Int J Syst Evol Microbiol	10.1099/ijs.0.025494-0	2010	*
Phylogeny	Rhodobacter changlensis sp. nov., a psychrotolerant, phototrophic alphaproteobacterium from the Himalayas of India.	Anil Kumar P, Srinivas TNR, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.65110-0	2007	*

References

#7691

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18774

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#30689

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27020 (see below)

#32200

#59989 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53722

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27020

IJSEM 470 2013 ( DOI 10.1099/ijs.0.042051-0 , PubMed 22493172 )

#28442

IJSEM 2568 2007 ( DOI 10.1099/ijs.0.65110-0 , PubMed 17978219 )

* These data were automatically processed and therefore are not curated

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Cereibacter changlensis DSM 18774

Cereibacter changlensis DSM 18774

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