Name: Rhizobium tibeticum DSM 21102
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13637

Type strain:

Species: Rhizobium tibeticum

Culture col. no.: DSM 21102, CCBAU 85039, CGMCC 1.7071, LMG 24453

Strain history: <- W. X. Chen, China Agric. Univ., College Biol. Sci., Beijing <- B. C. Hou; CCBAU 85039

NCBI tax ID(s): 501024 (species)

SI-ID 364849

CGMCC 1.7071, LMG 24453, DSM 21102

Section

Rhizobium tibeticum DSM 21102 is a mesophilic, Gram-negative bacterium that was isolated from root nodules of Trigonella archiducis-nicolai Vassilcz.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium tibeticum**
	Full Scientific Name (LPSN)	Rhizobium tibeticum Hou et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.987

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15554]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #15554]

Culture medium growth

[Ref.: #15554]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15554]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15554]			growth	28 °C

[Ref.: #15554]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15554]	Sample type/isolated from	root nodules of Trigonella archiducis-nicolai (Širj.) Vassilcz
[Ref.: #15554]	Host species	Trigonella archiducis-nicolai
[Ref.: #15554]	Geographic location (country and/or sea, region)	Tibet
[Ref.: #15554]	Country	China
[Ref.: #15554]	Country ISO 3 Code	CHN
[Ref.: #15554]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU256404 (>99% sequence identity) for Rhizobium from Microbeatlas

Aquatic Samples	29
Soil Samples	58
Animal Samples	20
Plant Samples	240
Total Samples	347

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15554]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15554]	Rhizobium etli strain CCBAU 85039 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU288744	1713	ENA	29449 tax ID
[Ref.: #15554]	Rhizobium tibeticum strain CCBAU 85039 16S ribosomal RNA gene, partial sequence	EU256404	1364	ENA	501024 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium tibeticum CCBAU85039	GCA_900108425	contig	GenBank	501024 tax ID	*
[Ref.: #66792]	Rhizobium tibeticum CGMCC 1.7071	GCA_900110205	scaffold	GenBank	501024 tax ID	*
[Ref.: #66792]	Rhizobium tibeticum strain CCBAU85039	501024.6	wgs	PATRIC	501024 tax ID	*
[Ref.: #66792]	Rhizobium tibeticum strain CGMCC 1.7071	501024.7	wgs	PATRIC	501024 tax ID	*
[Ref.: #66792]	Rhizobium tibeticum CGMCC 1.7071	2671180023	draft	JGI IMG/M	501024 tax ID	*

[Ref.: #15554]

GC-content

59.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhizobium tibeticum strain CGMCC 1.7071 PATRIC: 501024.7
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhizobium tibeticum CGMCC 1.7071 NCBI: GCA_900110205.1
[Ref.: #69480]	glucose-ferment	no	90.866	no
[Ref.: #69480]	motile	yes	89.552	no
[Ref.: #69480]	flagellated	no	82.686	no
[Ref.: #69480]	gram-positive	no	96.964	no
[Ref.: #69480]	anaerobic	no	98.03	no
[Ref.: #69480]	aerobic	yes	92.772	no
[Ref.: #69480]	halophile	no	89.028	no
[Ref.: #69480]	spore-forming	no	95.08	no
[Ref.: #69480]	thermophile	no	99.467	no
[Ref.: #69480]	glucose-util	yes	89.181	no

Availability in culture collections External links

[Ref.: #15554]

Culture collection no.

DSM 21102, CCBAU 85039, CGMCC 1.7071, LMG 24453

[Ref.: #82820]

SI-ID 364849

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T.	Torres Tejerizo G, Wibberg D, Winkler A, Ormeno-Orrillo E, Martinez-Romero E, Niehaus K, Puhler A, Kalinowski J, Lagares A, Schluter A, Pistorio M	Genome Announc	10.1128/genomeA.01513-16	2017	*
Phylogeny	Rhizobium metallidurans sp. nov., a symbiotic heavy metal resistant bacterium isolated from the Anthyllis vulneraria Zn-hyperaccumulator.	Grison CM, Jackson S, Merlot S, Dobson A, Grison C	Int J Syst Evol Microbiol	10.1099/ijs.0.000130	2015	*
Phylogeny	Rhizobium tibeticum sp. nov., a symbiotic bacterium isolated from Trigonella archiducis-nicolai (Sirj.) Vassilcz.	Hou BC, Wang ET, Li Y Jr, Jia RZ, Chen WF, Gao Y, Dong RJ, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.009647-0	2009	*

References

#15554

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21102

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82820

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID364849.1 )

* These data were automatically processed and therefore are not curated

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Rhizobium tibeticum strain CGMCC 1.7071

Rhizobium tibeticum CGMCC 1.7071

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