Name: Rhizobium multihospitium DSM 21814
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13635

Type strain:

Species: Rhizobium multihospitium

Culture col. no.: DSM 21814, CCBAU 83401, HAMBI 2975, LMG 23946

Strain history: <- X. Sui, China Agric. Univ., College Biol. Sci., Beijing <- T. X. Han et al.

NCBI tax ID(s): 410764 (species)

SI-ID 293665

HAMBI 2975, LMG 23946, LMG 24298, DSM 21814

Special Collections

Section

Rhizobium multihospitium DSM 21814 is an aerobe, Gram-negative, motile bacterium that was isolated from root nodule of Halimodendron halodendron.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium multihospitium**
	Full Scientific Name (LPSN)	Rhizobium multihospitium Han et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32485]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.5

[Ref.: #32485]	Cell length	01-03 µm

[Ref.: #32485]	Cell width	0.3-0.5 µm

[Ref.: #32485]	Cell shape	rod-shaped

[Ref.: #32485]	Motility	yes

[Ref.: #32485]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15897]

Culture medium

YMA-MEDIUM (MODIFIED) (DSMZ Medium 1031a)

[Ref.: #15897]

Culture medium growth

[Ref.: #15897]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15897]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15897]	growth	28 °C
[Ref.: #32485]	growth	12-37 °C
[Ref.: #32485]	optimum	28 °C

	pH	Kind of pH		pH
[Ref.: #32485]			optimum	7
[Ref.: #32485]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32485]

Oxygen tolerance

aerobe

[Ref.: #32485]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %90.866
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #32485]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32485]	arabinose ChEBI	+	carbon source
[Ref.: #32485]	arginine ChEBI	+	carbon source
[Ref.: #32485]	aspartate ChEBI	+	carbon source
[Ref.: #32485]	fructose ChEBI	+	carbon source
[Ref.: #32485]	galactose ChEBI	+	carbon source
[Ref.: #32485]	glucose ChEBI	+	carbon source
[Ref.: #32485]	lactose ChEBI	+	carbon source
[Ref.: #32485]	maltose ChEBI	+	carbon source
[Ref.: #32485]	mannose ChEBI	+	carbon source
[Ref.: #32485]	proline ChEBI	+	carbon source
[Ref.: #32485]	raffinose ChEBI	+	carbon source
[Ref.: #32485]	rhamnose ChEBI	+	carbon source
[Ref.: #32485]	salicin ChEBI	+	carbon source
[Ref.: #32485]	succinate ChEBI	+	carbon source
[Ref.: #32485]	sucrose ChEBI	+	carbon source
[Ref.: #32485]	trehalose ChEBI	+	carbon source
[Ref.: #32485]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32485]	catalase	+	1.11.1.6
[Ref.: #32485]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32485]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15897]	Sample type/isolated from	root nodule of Halimodendron halodendron
[Ref.: #15897]	Host species	Halimodendron halodendron
[Ref.: #15897]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #15897]	Country	China
[Ref.: #15897]	Country ISO 3 Code	CHN
[Ref.: #15897]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF035074 (>99% sequence identity) for Rhizobiaceae from Microbeatlas

Aquatic Samples	403
Soil Samples	3171
Animal Samples	1252
Plant Samples	1013
Total Samples	5839

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15897]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15897]	Rhizobium multihospitium strain CCBAU 83401 16S ribosomal RNA gene, partial sequence	EF035074	1363	GenBank ENA	410764 tax ID
[Ref.: #20218]	Rhizobium multihospitium strain CCBAU 83401 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EF490015	1105	GenBank ENA	410764 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium multihospitium HAMBI 2975	GCA_900094585	scaffold	GenBank ENA	410764 tax ID	*
[Ref.: #66792]	Rhizobium multihospitium strain HAMBI 2975	410764.9	wgs	PATRIC	410764 tax ID	*
[Ref.: #66792]	Rhizobium multihospitium HAMBI 2975	2615840698	draft	JGI IMG/M	410764 tax ID	*

[Ref.: #15897]	GC-content	65.3-66.0 mol%
[Ref.: #32485]	GC-content	65.3-66 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhizobium multihospitium HAMBI 2975 NCBI: GCA_900094585.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhizobium multihospitium HAMBI 2975 NCBI: GCA_900094585.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.665	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.451	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.866	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	77.74	no

Availability in culture collections External links

[Ref.: #15897]

Culture collection no.

DSM 21814, CCBAU 83401, HAMBI 2975, LMG 23946

[Ref.: #82819]

SI-ID 293665

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhizobium dioscoreae sp. nov., a plant growth-promoting bacterium isolated from yam (Dioscorea species).	Ouyabe M, Tanaka N, Shiwa Y, Fujita N, Kikuno H, Babil P, Shiwachi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004381	2020	*
Phylogeny	Rhizobium multihospitium sp. nov., isolated from multiple legume species native of Xinjiang, China.	Han TX, Wang ET, Wu LJ, Chen WF, Gu JG, Gu CT, Tian CF, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.65568-0	2008	*

References

#15897

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21814

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32485

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28705 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82819

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID293665.1 )

#28705

IJSEM 1693 2008 ( DOI 10.1099/ijs.0.65568-0 , PubMed 18599718 )

* These data were automatically processed and therefore are not curated

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Rhizobium multihospitium HAMBI 2975

Rhizobium multihospitium HAMBI 2975

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