Name: Shigella sonnei CIP 104223
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 136283

Type strain:

Species: Shigella sonnei

Culture col. no.: CIP 104223, ATCC 25931, CCUG 32351, NCDC 1120-66

NCBI tax ID(s): 624 (species)

Other strains from Shigella sonnei

S. sonnei I virulent, CCUG 68726, NCTC 12984, ... (type strain)
S. sonnei DSM 25715, NCCP 11768
S. sonnei CIP 106203
S. sonnei CIP 63.10
S. sonnei CIP 51.1
S. sonnei CIP 55.56
S. sonnei CIP 106345
S. sonnei CIP 66.4
S. sonnei CIP 51.44
S. sonnei CIP 106346
S. sonnei CIP 106347
S. sonnei CIP 106470
S. sonnei CIP 67.63
S. sonnei CIP 106204
S. sonnei CIP 52.55
S. sonnei CCUG 9567, NCTC 9774
S. sonnei CCUG 19136
S. sonnei CCUG 26076
S. sonnei CCUG 26684
S. sonnei CCUG 26943
S. sonnei CCUG 34429
S. sonnei CCUG 35690
S. sonnei CCUG 37894
S. sonnei CCUG 42208
S. sonnei CCUG 46081
S. sonnei CCUG 63282

Section

Shigella sonnei CIP 104223 is a mesophilic bacterium that was isolated from Human feces.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Shigella*
	Species	**Shigella sonnei**
	Full Scientific Name (PNU)	Shigella sonnei (Levine 1920) Weldin 1927 (Approved Lists 1980)

Synonym

"Bacterium sonnei"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #35641]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #35641]

Culture medium growth

[Ref.: #35641]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #35641]			growth	30 °C

[Ref.: #35641]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #50969]

Fatty acid	Percentage	ECL
C16:1 ω7c	23.1	15.819
C16:0	20.4	16
C18:1 ω7c /12t/9t	17.7	17.824
C15:0	10.4	15
C14:0	6.2	14
C14:0 3OH/C16:1 ISO I	5.5	15.485
C17:0 CYCLO	4.2	16.888
C12:0	3.4	12
C17:0	2.1	17
C13:0	1.8	13
C13:0 3OH/C15:1 i I/H	1.5	14.469
C12:0 ALDE ?	1.2	10.915
C17:1 ω8c	1	16.792
C15:1 ω8c	0.8	14.792
C18:2 ω6,9c/C18:0 ANTE	0.8	17.724

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #50969]	Sample type/isolated from	Human feces
[Ref.: #50969]	Sampling date	1966
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shigella sonnei strain FDAARGOS_776 strain Not applicable	624.1857	wgs	PATRIC	624 tax ID	*

Availability in culture collections External links

[Ref.: #35641]

Culture collection no.

CIP 104223, ATCC 25931, CCUG 32351, NCDC 1120-66

[Ref.: #20218]

Associated Passport(s) in StrainInfo

57083, 21604

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Study of probiotic potential of four wild Lactobacillus rhamnosus strains.	Tuo Y, Zhang W, Zhang L, Ai L, Zhang Y, Han X, Yi H	Anaerobe	10.1016/j.anaerobe.2013.03.007	2013	*
Pathogenicity	Evaluation of probiotic properties of Lactobacillus plantarum WLPL04 isolated from human breast milk.	Jiang M, Zhang F, Wan C, Xiong Y, Shah NP, Wei H, Tao X	J Dairy Sci	10.3168/jds.2015-10434	2016	*
Pathogenicity	Anti-adhesion of probiotic Enterococcus faecium WEFA23 against five pathogens and the beneficial effect of its S-layer proteins against Listeria monocytogenes.	He Y, Xu X, Zhang F, Xu D, Liu Z, Tao X, Wei H	Can J Microbiol	10.1139/cjm-2018-0031	2018	*
Pathogenicity	Screening of the Dichloromethane: Methanolic Extract of Centella asiatica for Antibacterial Activities against Salmonella typhi, Escherichia coli, Shigella sonnei, Bacillus subtilis, and Staphylococcus aureus.	Sieberi BM, Omwenga GI, Wambua RK, Samoei JC, Ngugi MP	ScientificWorldJournal	10.1155/2020/6378712	2020	*
Phylogeny	Selective Thermotolerant Lactic Acid Bacteria Isolated From Fermented Juice of Epiphytic Lactic Acid Bacteria and Their Effects on Fermentation Quality of Stylo Silages.	Pitiwittayakul N, Bureenok S, Schonewille JT	Front Microbiol	10.3389/fmicb.2021.673946	2021	*
	Probiotic Effects and Metabolic Products of Enterococcus faecalis LD33 with Respiration Capacity.	Jiao Y, Yang H, Shigwedha N, Zhang S, Liu F, Zhang L	Foods	10.3390/foods11040606	2022	*
	Antibacterial Mechanism of Eugenol Against Shigella sonnei and Its Antibacterial Application in Lettuce Juice.	Su R, Bai X, Liu X, Song L, Liu X, Zhan X, Guo D, Wang Y, Chang Y, Shi C	Foodborne Pathog Dis	10.1089/fpd.2022.0046	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35641 Collection of Institut Pasteur ; Curators of the CIP; CIP 104223
#50969 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32351

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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