Rhizobium etli (DSM 11541, ATCC 51251, CFN 42)

Name: Rhizobium etli (DSM 11541, ATCC 51251, CFN 42)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13625

Type strain

Culture col. no. DSM 11541 ATCC 51251 CFN 42 NBRC 15573 LMG 17827 5 more

NCBI tax ID(s) 347834 29449

Special Collections DSMZ JCM CIP

Links

Rhizobium etli DSM 11541 is a mesophilic, Gram-negative, rod-shaped prokaryote that was isolated from beans, Phaseolus vulgaris.

Gram-negative rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 10585

LMG 17827,ATCC 51251,CIP 104814,DSM 11541,IFO 15573,CECT 4651,HAMBI 1727,NBRC 15573,BCRC 15792,CCRC 15792,ICMP 13642,KACC 10799,JCM 21823,IAM 15379

@ref 20215

Last LPSN update 2025-12-16 09:50:08

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Rhizobiaceae

Genus Rhizobium

Species Rhizobium etli

Full scientific name Rhizobium etli Segovia et al. 1993

BacDive ID	Other strains from **Rhizobium etli** (1)	Type strain
137722	R. etli CIP 106475, MIM 2

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
119136	negative	rod-shaped

Colony morphology

@ref	Incubation period
4407	1-2 days
119136

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4407	RHIZOBIUM MEDIUM (DSMZ Medium 98)	Medium recipe at MediaDive	Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
41317	MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii		Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
119136	CIP Medium 1	Medium recipe at CIP
4407	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4407	positive	growth	28	mesophilic
41317	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic
119136	positive	growth	22-37
119136	negative	growth	10
119136	negative	growth	41
119136	negative	growth	45

Physiology and metabolism

Halophily

@ref	Salt	Tested relation	Concentration
119136	NaCl	growth	0 %
119136	NaCl	growth	2 %
119136	NaCl	growth	4 %
119136	NaCl	growth	6 %
119136	NaCl	growth	8 %
119136	NaCl	growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
119136	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
119136	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
119136	606565 ChEBI	hippurate	-	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
119136	17632 ChEBI	nitrate	-	reduction
119136	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
119136	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119136	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
119136	15688 ChEBI	acetoin	-
119136	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119136	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
119136	amylase	-
68382	beta-galactosidase	+	3.2.1.23	from API zym
119136	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119136	caseinase	-	3.4.21.50
119136	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
119136	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
119136	gamma-glutamyltransferase	-	2.3.2.2
119136	gelatinase	-
119136	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119136	lipase	-
68382	lipase (C 14)	-		from API zym
119136	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
119136	ornithine decarboxylase	-	4.1.1.17
119136	oxidase	-
119136	phenylalanine ammonia-lyase	-	4.3.1.24
119136	protease	-
68382	trypsin	+	3.4.21.4	from API zym
119136	tryptophan deaminase	-
119136	tween esterase	-
119136	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	starch degradation	100	10 of 10
66794	ribulose monophosphate pathway	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	pentose phosphate pathway	100	11 of 11
66794	allantoin degradation	100	9 of 9
66794	Entner Doudoroff pathway	100	10 of 10
66794	threonine metabolism	100	10 of 10
66794	palmitate biosynthesis	100	22 of 22
66794	glycogen biosynthesis	100	4 of 4
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	ppGpp biosynthesis	100	4 of 4
66794	IAA biosynthesis	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	ketogluconate metabolism	100	8 of 8
66794	quinate degradation	100	2 of 2
66794	cyanate degradation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	valine metabolism	100	9 of 9
66794	aerobactin biosynthesis	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	flavin biosynthesis	93.33	14 of 15
66794	citric acid cycle	92.86	13 of 14
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	pyrimidine metabolism	86.67	39 of 45
66794	photosynthesis	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	vitamin B12 metabolism	85.29	29 of 34
66794	urea cycle	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	purine metabolism	84.04	79 of 94
66794	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
66794	NAD metabolism	83.33	15 of 18
66794	alanine metabolism	82.76	24 of 29
66794	degradation of pentoses	82.14	23 of 28
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	vitamin B6 metabolism	81.82	9 of 11
66794	proline metabolism	81.82	9 of 11
66794	cellulose degradation	80	4 of 5
66794	myo-inositol biosynthesis	80	8 of 10
66794	degradation of sugar acids	80	20 of 25
66794	glycogen metabolism	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	4-hydroxyphenylacetate degradation	80	8 of 10
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	gallate degradation	80	4 of 5
66794	d-mannose degradation	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	isoleucine metabolism	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	lysine metabolism	73.81	31 of 42
66794	tryptophan metabolism	73.68	28 of 38
66794	methionine metabolism	73.08	19 of 26
66794	metabolism of disaccharids	72.73	8 of 11
66794	d-xylose degradation	72.73	8 of 11
66794	oxidative phosphorylation	72.53	66 of 91
66794	degradation of hexoses	72.22	13 of 18
66794	heme metabolism	71.43	10 of 14
66794	glutathione metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	arginine metabolism	70.83	17 of 24
66794	leucine metabolism	69.23	9 of 13
66794	histidine metabolism	68.97	20 of 29
66794	degradation of sugar alcohols	68.75	11 of 16
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	methane metabolism	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	3-phenylpropionate degradation	66.67	10 of 15
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	phenol degradation	65	13 of 20
66794	lipid metabolism	64.52	20 of 31
66794	tyrosine metabolism	64.29	9 of 14
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	polyamine pathway	60.87	14 of 23
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	creatinine degradation	60	3 of 5
66794	ascorbate metabolism	59.09	13 of 22
66794	sulfate reduction	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	glycine metabolism	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	cyclohexanol degradation	50	2 of 4
66794	resorcinol degradation	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	vitamin E metabolism	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	nitrate assimilation	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	glycine betaine biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	carnitine metabolism	37.5	3 of 8
66794	carotenoid biosynthesis	36.36	8 of 22
66794	bile acid biosynthesis, neutral pathway	35.29	6 of 17
66794	sphingosine metabolism	33.33	2 of 6
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	arachidonic acid metabolism	33.33	6 of 18
66794	sulfoquinovose degradation	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	chlorophyll metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	toluene degradation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119136	-	+	+	-	-	+	-	-	+	-	+	-	-	+	-	+	+	+	+	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119136	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119136	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
4407	beans, Phaseolus vulgaris	Phaseolus vulgaris	Guanajuato	Mexico	MEX	North America
67770	Root nodule of Phaseolus vulgaris	Phaseolus vulgaris		Mexico	MEX	North America
119136	Guanajuato		Guanajuato	Mexico	MEX	North America

Taxonmaps

69479

Global distribution of 16S sequence AB680905 (>99% sequence identity) for Rhizobium from Microbeatlas

Aquatic Samples	32
Soil Samples	50
Animal Samples	28
Plant Samples	223
Total Samples	333

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4407	1	Risk group (German classification) According to TRBA 466
119136	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM9204v1 assembly for Rhizobium etli CFN 42	complete	GCA_000092045	347834.17	640427137	347834	97.35

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
67770	Rhizobium etli gene for 16S rRNA, partial sequence, strain: NBRC 15573	AB680905	1406	29449
124043	Rhizobium etli strain LMG 17827 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence and 23S ribosomal RNA gene, partial sequence	AF541974	1189	29449
124043	Rhizobium etli strain CFN 42 16S ribosomal RNA gene, partial sequence.	EU488751	1423	29449
124043	Rhizobium etli CFN 42 16S ribosomal RNA gene, partial sequence.	U28916	1460	29449

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Rapid Shifts in Bacterial Community Assembly under Static and Dynamic Hydration Conditions in Porous Media.	Kleyer H, Tecon R, Or D.	Appl Environ Microbiol	10.1128/aem.02057-19	2019
Pathogenicity	Structure of ribosome-bound azole-modified peptide phazolicin rationalizes its species-specific mode of bacterial translation inhibition.	Travin DY, Watson ZL, Metelev M, Ward FR, Osterman IA, Khven IM, Khabibullina NF, Serebryakova M, Mergaert P, Polikanov YS, Cate JHD, Severinov K.	Nat Commun	10.1038/s41467-019-12589-5	2019
	Proteome-wide bioinformatic annotation and functional validation of the monotopic phosphoglycosyl transferase superfamily.	Durand T, Dodge GJ, Siuda RP, Higinbotham HR, Arbour CA, Ghosh S, Allen KN, Imperiali B.	Proc Natl Acad Sci U S A	10.1073/pnas.2417572121	2024
	Exploring Proteins Containing Amyloidogenic Regions in the Proteomes of Bacteria of the Order Rhizobiales.	Antonets KS, Kliver SF, Nizhnikov AA.	Evol Bioinform Online	10.1177/1176934318768781	2018
	Development of a Microemulsion Formulation for Antimicrobial SecA Inhibitors.	Hu J, Akula N, Wang N.	PLoS One	10.1371/journal.pone.0150433	2016
	Minimum requirements of flagellation and motility for infection of Agrobacterium sp. strain H13-3 by flagellotropic bacteriophage 7-7-1.	Yen JY, Broadway KM, Scharf BE.	Appl Environ Microbiol	10.1128/aem.01082-12	2012
Enzymology	Analysis of stable low-molecular-weight RNA profiles of members of the family Rhizobiaceae.	Velazquez E, Cruz-Sanchez JM, Mateos PF, Martinez-Molina E.	Appl Environ Microbiol	10.1128/aem.64.4.1555-1559.1998	1998
Metabolism	Identification of functional LsrB-like autoinducer-2 receptors.	Pereira CS, de Regt AK, Brito PH, Miller ST, Xavier KB.	J Bacteriol	10.1128/jb.00976-09	2009
Metabolism	The METTL20 Homologue from Agrobacterium tumefaciens Is a Dual Specificity Protein-lysine Methyltransferase That Targets Ribosomal Protein L7/L12 and the beta Subunit of Electron Transfer Flavoprotein (ETFbeta).	Malecki J, Dahl HA, Moen A, Davydova E, Falnes PO.	J Biol Chem	10.1074/jbc.m115.709261	2016
Enzymology	Sequence analysis of the cryptic plasmid pMG101 from Rhodopseudomonas palustris and construction of stable cloning vectors.	Inui M, Roh JH, Zahn K, Yukawa H.	Appl Environ Microbiol	10.1128/aem.66.1.54-63.2000	2000
Phylogeny	Analysis and comparison of the pan-genomic properties of sixteen well-characterized bacterial genera.	Trost B, Haakensen M, Pittet V, Ziola B, Kusalik A.	BMC Microbiol	10.1186/1471-2180-10-258	2010
Phylogeny	Unearthing Optimal Symbiotic Rhizobia Partners from the Main Production Area of Phaseolus vulgaris in Yunnan.	Zhang J, Wang J, Feng Y, Brunel B, Zong X.	Int J Mol Sci	10.3390/ijms25158511	2024
	RhizoBindingSites v2.0 Is a Bioinformatic Database of DNA Motifs Potentially Involved in Transcriptional Regulation Deduced From Their Genomic Sites.	Taboada-Castro H, Hernandez-Alvarez AJ, Castro-Mondragon JA, Encarnacion-Guevara S.	Bioinform Biol Insights	10.1177/11779322241272395	2024
	Genetic Characterization and Symbiotic Performance of Soybean Rhizobia Under Cold and Water-Deficient Conditions in Poland.	Watanabe R, Artigas Ramirez MD, Agake SI, Bellingrath-Kimura SD, Lewandowska S, Onishi Y, Nishikawa Y, Takeyama H, Yasuda M, Ohkama-Ohtsu N.	Plants (Basel)	10.3390/plants14121786	2025
	Identification of sigma factor 54-regulated small non-coding RNAs by employing genome-wide and transcriptome-based methods in rhizobium strains.	Rajendran K, Kumar V, Raja I, Kumariah M, Tennyson J.	3 Biotech	10.1007/s13205-022-03394-x	2022
Genetics	Research on the targeted improvement of the yield of a new VB₁₂-producing strain, Ensifer adhaerens S305, based on genomic and transcriptomic analysis.	Liu Y, Huang W, Wang Q, Ma C, Chang Y, Su J.	BMC Biotechnol	10.1186/s12896-023-00824-3	2023
Pathogenicity	Guidelines for the description of rhizobial symbiovars.	Martinez-Romero E, Peix A, Hungria M, Mousavi SA, Martinez-Romero J, Young P.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006373	2024
Genetics	Computational inference of Rhizobium phaseoli transcriptional regulatory network predicts Transcription Factors involved in nodulation.	Hernandez-Benitez EM, Martinez-Romero E, Aguirre-Noyola JL, Farias-Rico JA, Ledezma-Tejeida D.	Brief Funct Genomics	10.1093/bfgp/elaf020	2025
	RepB C-terminus mutation of a pRi-repABC binary vector affects plasmid copy number in Agrobacterium and transgene copy number in plants.	Vaghchhipawala Z, Radke S, Nagy E, Russell ML, Johnson S, Gelvin SB, Gilbertson LA, Ye X.	PLoS One	10.1371/journal.pone.0200972	2018
	Dual factors required for cytochrome-P450-mediated hydrocarbon ring contraction in bacterial gibberellin phytohormone biosynthesis.	Nagel R, Alexander LE, Stewart CE, Peters RJ.	Proc Natl Acad Sci U S A	10.1073/pnas.2221549120	2023
Metabolism	Crystal structures of the elusive Rhizobium etli L-asparaginase reveal a peculiar active site.	Loch JI, Imiolczyk B, Sliwiak J, Wantuch A, Bejger M, Gilski M, Jaskolski M.	Nat Commun	10.1038/s41467-021-27105-x	2021
Metabolism	Unraveling a Tangled Skein: Evolutionary Analysis of the Bacterial Gibberellin Biosynthetic Operon.	Nett RS, Nguyen H, Nagel R, Marcassa A, Charles TC, Friedberg I, Peters RJ.	mSphere	10.1128/msphere.00292-20	2020
	Diversity of function and higher-order structure within HWE sensor histidine kinases.	Dikiy I, Swingle D, Toy K, Edupuganti UR, Rivera-Cancel G, Gardner KH.	J Biol Chem	10.1016/j.jbc.2023.104934	2023
	Roles of quorum sensing molecules from Rhizobium etli RT1 in bacterial motility and biofilm formation.	Dixit S, Dubey RC, Maheshwari DK, Seth PK, Bajpai VK.	Braz J Microbiol	10.1016/j.bjm.2016.08.005	2017
Enzymology	The NtrYX Two-Component System of Paracoccus denitrificans Is Required for the Maintenance of Cellular Iron Homeostasis and for a Complete Denitrification under Iron-Limited Conditions.	Olaya-Abril A, Luque-Almagro VM, Hidalgo-Carrillo J, Chicano-Galvez E, Urbano FJ, Moreno-Vivian C, Richardson DJ, Roldan MD.	Int J Mol Sci	10.3390/ijms23169172	2022
	The Type IV Secretion System (T4SS) Mediates Symbiosis between Bradyrhizobium sp. SUTN9-2 and Legumes.	Wangthaisong P, Piromyou P, Songwattana P, Wongdee J, Teamtaisong K, Tittabutr P, Boonkerd N, Teaumroong N.	Appl Environ Microbiol	10.1128/aem.00040-23	2023
	Experimental evolution can enhance benefits of rhizobia to novel legume hosts.	Quides KW, Weisberg AJ, Trinh J, Salaheldine F, Cardenas P, Lee HH, Jariwala R, Chang JH, Sachs JL.	Proc Biol Sci	10.1098/rspb.2021.0812	2021
	Thermodynamic matchers for the construction of the cuckoo RNA family.	Reinkensmeier J, Giegerich R.	RNA Biol	10.1080/15476286.2015.1017206	2015
	Genome Sequence of Rhizobium lupini HPC(L) Isolated from Saline Desert Soil, Kutch (Gujarat).	Agarwal L, Purohit HJ.	Genome Announc	10.1128/genomea.00071-12	2013
Enzymology	Acquisition of pcnB [poly(A) polymerase I] genes via horizontal transfer from the beta, gamma-Proteobacteria.	Jones GH.	Microb Genom	10.1099/mgen.0.000508	2021
Pathogenicity	The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host.	Eardly B, Meor Osman WA, Ardley J, Zandberg J, Gollagher M, van Berkum P, Elia P, Marinova D, Seshadri R, Reddy TBK, Ivanova N, Pati A, Woyke T, Kyrpides N, Loedolff M, Laird DW, Reeve W.	Front Microbiol	10.3389/fmicb.2022.735911	2022
Metabolism	Rewiring the specificity of extracytoplasmic function sigma factors.	Todor H, Osadnik H, Campbell EA, Myers KS, Li H, Donohue TJ, Gross CA.	Proc Natl Acad Sci U S A	10.1073/pnas.2020204117	2020
Genetics	The Composite 259-kb Plasmid of Martelella mediterranea DSM 17316^T-A Natural Replicon with Functional RepABC Modules from Rhodobacteraceae and Rhizobiaceae.	Bartling P, Brinkmann H, Bunk B, Overmann J, Goker M, Petersen J.	Front Microbiol	10.3389/fmicb.2017.01787	2017
Metabolism	Identification of an apiosyltransferase in the plant pathogen Xanthomonas pisi.	Smith JA, Bar-Peled M.	PLoS One	10.1371/journal.pone.0206187	2018
	The repABC Plasmids with Quorum-Regulated Transfer Systems in Members of the Rhizobiales Divide into Two Structurally and Separately Evolving Groups.	Wetzel ME, Olsen GJ, Chakravartty V, Farrand SK.	Genome Biol Evol	10.1093/gbe/evv227	2015
	Isolation, Biochemical and Genomic Characterization of Glyphosate Tolerant Bacteria to Perform Microbe-Assisted Phytoremediation.	Massot F, Gkorezis P, Van Hamme J, Marino D, Trifunovic BS, Vukovic G, d'Haen J, Pintelon I, Giulietti AM, Merini L, Vangronsveld J, Thijs S.	Front Microbiol	10.3389/fmicb.2020.598507	2020
	The Absence of the N-acyl-homoserine-lactone Autoinducer Synthase Genes traI and ngrI Increases the Copy Number of the Symbiotic Plasmid in Sinorhizobium fredii NGR234.	Grote J, Krysciak D, Petersen K, Gullert S, Schmeisser C, Forstner KU, Krishnan HB, Schwalbe H, Kubatova N, Streit WR.	Front Microbiol	10.3389/fmicb.2016.01858	2016
	Sphingomonas sediminicola Is an Endosymbiotic Bacterium Able to Induce the Formation of Root Nodules in Pea (Pisum sativum L.) and to Enhance Plant Biomass Production.	Mazoyon C, Hirel B, Pecourt A, Catterou M, Gutierrez L, Sarazin V, Dubois F, Duclercq J.	Microorganisms	10.3390/microorganisms11010199	2023
Phylogeny	A comprehensive phylogenetic analysis of copper transporting P_1B ATPases from bacteria of the Rhizobiales order uncovers multiplicity, diversity and novel taxonomic subtypes.	Cubillas C, Miranda-Sanchez F, Gonzalez-Sanchez A, Elizalde JP, Vinuesa P, Brom S, Garcia-de Los Santos A.	Microbiologyopen	10.1002/mbo3.452	2017
Metabolism	Alfalfa snakin-1 prevents fungal colonization and probably coevolved with rhizobia.	Garcia AN, Ayub ND, Fox AR, Gomez MC, Dieguez MJ, Pagano EM, Berini CA, Muschietti JP, Soto G.	BMC Plant Biol	10.1186/s12870-014-0248-9	2014
Metabolism	Role of trehalose in heat and desiccation tolerance in the soil bacterium Rhizobium etli.	Reina-Bueno M, Argandona M, Nieto JJ, Hidalgo-Garcia A, Iglesias-Guerra F, Delgado MJ, Vargas C.	BMC Microbiol	10.1186/1471-2180-12-207	2012
	New insights into the origins and evolution of rhizobia that nodulate common bean (Phaseolus vulgaris) in Brazil	Grange L, Hungria M, Graham PH, Martinez-Romero E.	Soil Biol Biochem	10.1016/j.soilbio.2006.10.008	2007
	Distribution of genes encoding nucleoid-associated protein homologs in plasmids.	Takeda T, Yun CS, Shintani M, Yamane H, Nojiri H.	Int J Evol Biol	10.4061/2011/685015	2011
Enzymology	A Novel L-Asparaginase from Hyperthermophilic Archaeon Thermococcus sibiricus: Heterologous Expression and Characterization for Biotechnology Application.	Dumina M, Zhgun A, Pokrovskaya M, Aleksandrova S, Zhdanov D, Sokolov N, El'darov M.	Int J Mol Sci	10.3390/ijms22189894	2021
	The genetics of symbiotic nitrogen fixation: comparative genomics of 14 rhizobia strains by resolution of protein clusters.	Black M, Moolhuijzen P, Chapman B, Barrero R, Howieson J, Hungria M, Bellgard M.	Genes (Basel)	10.3390/genes3010138	2012
Metabolism	Elucidation of the 3-O-deacylase gene, pagL, required for the removal of primary beta-hydroxy fatty acid from the lipid A in the nitrogen-fixing endosymbiont Rhizobium etli CE3.	Brown DB, Muszynski A, Salas O, Speed K, Carlson RW.	J Biol Chem	10.1074/jbc.m113.470484	2013
	Structural and biophysical aspects of l-asparaginases: a growing family with amazing diversity.	Loch JI, Jaskolski M.	IUCrJ	10.1107/s2052252521006011	2021
	AtlasT4SS: a curated database for type IV secretion systems.	Souza RC, del Rosario Quispe Saji G, Costa MO, Netto DS, Lima NC, Klein CC, Vasconcelos AT, Nicolas MF.	BMC Microbiol	10.1186/1471-2180-12-172	2012
	Comparative in silico analysis of ftsZ gene from different bacteria reveals the preference for core set of codons in coding sequence structuring and secondary structural elements determination.	Pal A, Saha BK, Saha J.	PLoS One	10.1371/journal.pone.0219231	2019
Metabolism	Conserved evolutionary units in the heme-copper oxidase superfamily revealed by novel homologous protein families.	Pei J, Li W, Kinch LN, Grishin NV.	Protein Sci	10.1002/pro.2503	2014
Phylogeny	Genetic diversity and host range of rhizobia nodulating Lotus tenuis in typical soils of the Salado River Basin (Argentina).	Estrella MJ, Munoz S, Soto MJ, Ruiz O, Sanjuan J.	Appl Environ Microbiol	10.1128/aem.02405-08	2009
	Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021.	Ulve VM, Sevin EW, Cheron A, Barloy-Hubler F.	BMC Genomics	10.1186/1471-2164-8-467	2007
	A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules.	Queiroux C, Washburn BK, Davis OM, Stewart J, Brewer TE, Lyons MR, Jones KM.	BMC Microbiol	10.1186/1471-2180-12-74	2012
Genetics	Comparative genome analysis of mycobacteria focusing on tRNA and non-coding RNA.	Behra PRK, Pettersson BMF, Ramesh M, Das S, Dasgupta S, Kirsebom LA.	BMC Genomics	10.1186/s12864-022-08927-5	2022
Genetics	Identification of novel glycosyl hydrolases with cellulolytic activity against crystalline cellulose from metagenomic libraries constructed from bacterial enrichment cultures.	Mori T, Kamei I, Hirai H, Kondo R.	Springerplus	10.1186/2193-1801-3-365	2014
Genetics	Phylogenomics of Reichenowia parasitica, an alphaproteobacterial endosymbiont of the freshwater leech Placobdella parasitica.	Kvist S, Narechania A, Oceguera-Figueroa A, Fuks B, Siddall ME.	PLoS One	10.1371/journal.pone.0028192	2011
Phylogeny	Complexity and variability of gut commensal microbiota in polyphagous lepidopteran larvae.	Tang X, Freitak D, Vogel H, Ping L, Shao Y, Cordero EA, Andersen G, Westermann M, Heckel DG, Boland W.	PLoS One	10.1371/journal.pone.0036978	2012
Genetics	Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.	Cardoso AA, Andraus MP, Borba TC, Martin-Didonet CC, Ferreira EP.	Braz J Microbiol	10.1016/j.bjm.2016.09.002	2017
	Identification of a novel ABC transporter required for desiccation tolerance, and biofilm formation in Rhizobium leguminosarum bv. viciae 3841.	Vanderlinde EM, Harrison JJ, Muszynski A, Carlson RW, Turner RJ, Yost CK.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2009.00824.x	2010
Metabolism	2-nitrobenzoate 2-nitroreductase (NbaA) switches its substrate specificity from 2-nitrobenzoic acid to 2,4-dinitrobenzoic acid under oxidizing conditions.	Kim YH, Song WS, Go H, Cha CJ, Lee C, Yu MH, Lau PC, Lee K.	J Bacteriol	10.1128/jb.02016-12	2013
	Origin of an alternative genetic code in the extremely small and GC-rich genome of a bacterial symbiont.	McCutcheon JP, McDonald BR, Moran NA.	PLoS Genet	10.1371/journal.pgen.1000565	2009
Genetics	The automatic annotation of bacterial genomes.	Richardson EJ, Watson M.	Brief Bioinform	10.1093/bib/bbs007	2013
	Denitrification activity of a remarkably diverse fen denitrifier community in finnish lapland is N-oxide limited.	Palmer K, Horn MA.	PLoS One	10.1371/journal.pone.0123123	2015
	Biochemical diversity of carboxyl esterases and lipases from Lake Arreo (Spain): a metagenomic approach.	Martinez-Martinez M, Alcaide M, Tchigvintsev A, Reva O, Polaina J, Bargiela R, Guazzaroni ME, Chicote A, Canet A, Valero F, Rico Eguizabal E, Guerrero Mdel C, Yakunin AF, Ferrer M.	Appl Environ Microbiol	10.1128/aem.00240-13	2013
Metabolism	Novel halo- and thermo-tolerant Cohnella sp. A01 L-glutaminase: heterologous expression and biochemical characterization.	Mosallatpour S, Aminzadeh S, Shamsara M, Hajihosseini R.	Sci Rep	10.1038/s41598-019-55587-9	2019
	REGEN: Ancestral Genome Reconstruction for Bacteria.	Yang K, Heath LS, Setubal JC.	Genes (Basel)	10.3390/genes3030423	2012
Metabolism	The Pseudomonas syringae type III effector HopG1 targets mitochondria, alters plant development and suppresses plant innate immunity.	Block A, Guo M, Li G, Elowsky C, Clemente TE, Alfano JR.	Cell Microbiol	10.1111/j.1462-5822.2009.01396.x	2010
	Phosphorylation systems in symbiotic nitrogen-fixing bacteria and their role in bacterial adaptation to various environmental stresses.	Lipa P, Janczarek M.	PeerJ	10.7717/peerj.8466	2020
Genetics	Insights into the history of a bacterial group II intron remnant from the genomes of the nitrogen-fixing symbionts Sinorhizobium meliloti and Sinorhizobium medicae.	Toro N, Martinez-Rodriguez L, Martinez-Abarca F.	Heredity (Edinb)	10.1038/hdy.2014.32	2014
	Analysis of Rhizobium etli and of its symbiosis with wild Phaseolus vulgaris supports coevolution in centers of host diversification.	Aguilar OM, Riva O, Peltzer E.	Proc Natl Acad Sci U S A	10.1073/pnas.0405321101	2004
Genetics	Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.).	Ormeno-Orrillo E, Menna P, Almeida LG, Ollero FJ, Nicolas MF, Pains Rodrigues E, Shigueyoshi Nakatani A, Silva Batista JS, Oliveira Chueire LM, Souza RC, Ribeiro Vasconcelos AT, Megias M, Hungria M, Martinez-Romero E.	BMC Genomics	10.1186/1471-2164-13-735	2012
	A study in entire chromosomes of violations of the intra-strand parity of complementary nucleotides (Chargaff's second parity rule).	Powdel BR, Satapathy SS, Kumar A, Jha PK, Buragohain AK, Borah M, Ray SK.	DNA Res	10.1093/dnares/dsp021	2009
Pathogenicity	Bacterial subfamily of LuxR regulators that respond to plant compounds.	Subramoni S, Gonzalez JF, Johnson A, Pechy-Tarr M, Rochat L, Paulsen I, Loper JE, Keel C, Venturi V.	Appl Environ Microbiol	10.1128/aem.00183-11	2011
	Limited Genetic Diversity in the Endophytic Sugarcane Bacterium Acetobacter diazotrophicus.	Caballero-Mellado J, Martinez-Romero E.	Appl Environ Microbiol	10.1128/aem.60.5.1532-1537.1994	1994
	Transcriptomic analysis of Rhizobium leguminosarum bacteroids in determinate and indeterminate nodules.	Green RT, East AK, Karunakaran R, Downie JA, Poole PS.	Microb Genom	10.1099/mgen.0.000254	2019
Genetics	Information theoretic perspective on genome clustering.	Veluchamy A, Mehta P, Srividhya KV, Vikram H, Govind MK, Gupta R, Aziz Bin Dukhyil A, Abdullah Alharbi R, Abdullah Aloyuni S, Hassan MM, Krishnaswamy S.	Saudi J Biol Sci	10.1016/j.sjbs.2020.12.039	2021
Metabolism	Flavin-dependent N-hydroxylating enzymes: distribution and application.	Mugge C, Heine T, Baraibar AG, van Berkel WJH, Paul CE, Tischler D.	Appl Microbiol Biotechnol	10.1007/s00253-020-10705-w	2020
	The complete genome of Burkholderia phenoliruptrix strain BR3459a, a symbiont of Mimosa flocculosa: highlighting the coexistence of symbiotic and pathogenic genes.	Zuleta LF, Cunha Cde O, de Carvalho FM, Ciapina LP, Souza RC, Mercante FM, de Faria SM, Baldani JI, Straliotto R, Hungria M, de Vasconcelos AT.	BMC Genomics	10.1186/1471-2164-15-535	2014
Metabolism	RNase III processing of intervening sequences found in helix 9 of 23S rRNA in the alpha subclass of Proteobacteria.	Evguenieva-Hackenberg E, Klug G.	J Bacteriol	10.1128/jb.182.17.4719-4729.2000	2000
Metabolism	Hydroxyatrazine N-ethylaminohydrolase (AtzB): an amidohydrolase superfamily enzyme catalyzing deamination and dechlorination.	Seffernick JL, Aleem A, Osborne JP, Johnson G, Sadowsky MJ, Wackett LP.	J Bacteriol	10.1128/jb.00630-07	2007
	An orphan LuxR homolog of Sinorhizobium meliloti affects stress adaptation and competition for nodulation.	Patankar AV, Gonzalez JE.	Appl Environ Microbiol	10.1128/aem.01692-08	2009
	Histoplasma capsulatum proteome response to decreased iron availability.	Winters MS, Spellman DS, Chan Q, Gomez FJ, Hernandez M, Catron B, Smulian AG, Neubert TA, Deepe GS.	Proteome Sci	10.1186/1477-5956-6-36	2008
Phylogeny	Comparative genome analysis of "Candidatus Phytoplasma australiense" (subgroup tuf-Australia I; rp-A) and "Ca. Phytoplasma asteris" Strains OY-M and AY-WB.	Tran-Nguyen LT, Kube M, Schneider B, Reinhardt R, Gibb KS.	J Bacteriol	10.1128/jb.01301-07	2008
Metabolism	Pivotal roles of the outer membrane polysaccharide export and polysaccharide copolymerase protein families in export of extracellular polysaccharides in gram-negative bacteria.	Cuthbertson L, Mainprize IL, Naismith JH, Whitfield C.	Microbiol Mol Biol Rev	10.1128/mmbr.00024-08	2009
Enzymology	A new chemolithoautotrophic arsenite-oxidizing bacterium isolated from a gold mine: phylogenetic, physiological, and preliminary biochemical studies.	Santini JM, Sly LI, Schnagl RD, Macy JM.	Appl Environ Microbiol	10.1128/aem.66.1.92-97.2000	2000
Metabolism	Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide.	Strittmatter AW, Liesegang H, Rabus R, Decker I, Amann J, Andres S, Henne A, Fricke WF, Martinez-Arias R, Bartels D, Goesmann A, Krause L, Puhler A, Klenk HP, Richter M, Schuler M, Glockner FO, Meyerdierks A, Gottschalk G, Amann R.	Environ Microbiol	10.1111/j.1462-2920.2008.01825.x	2009
	Effects of temperature stress on bean-nodulating Rhizobium strains.	Michiels J, Verreth C, Vanderleyden J.	Appl Environ Microbiol	10.1128/aem.60.4.1206-1212.1994	1994
Metabolism	Evolution and functional characterization of the RH50 gene from the ammonia-oxidizing bacterium Nitrosomonas europaea.	Cherif-Zahar B, Durand A, Schmidt I, Hamdaoui N, Matic I, Merrick M, Matassi G.	J Bacteriol	10.1128/jb.01089-07	2007
Genetics	Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium.	Frangeul L, Quillardet P, Castets AM, Humbert JF, Matthijs HC, Cortez D, Tolonen A, Zhang CC, Gribaldo S, Kehr JC, Zilliges Y, Ziemert N, Becker S, Talla E, Latifi A, Billault A, Lepelletier A, Dittmann E, Bouchier C, de Marsac NT.	BMC Genomics	10.1186/1471-2164-9-274	2008
Phylogeny	Three phylogenetic groups of nodA and nifH genes in Sinorhizobium and Mesorhizobium isolates from leguminous trees growing in Africa and Latin America.	Haukka K, Lindstrom K, Young JP.	Appl Environ Microbiol	10.1128/aem.64.2.419-426.1998	1998
Metabolism	Characterization of phenylpyruvate decarboxylase, involved in auxin production of Azospirillum brasilense.	Spaepen S, Versees W, Gocke D, Pohl M, Steyaert J, Vanderleyden J.	J Bacteriol	10.1128/jb.00830-07	2007
Metabolism	Actinobacterial nitrate reducers and proteobacterial denitrifiers are abundant in N2O-metabolizing palsa peat.	Palmer K, Horn MA.	Appl Environ Microbiol	10.1128/aem.00810-12	2012
	The stress-related, rhizobial small RNA RcsR1 destabilizes the autoinducer synthase encoding mRNA sinI in Sinorhizobium meliloti.	Baumgardt K, Smidova K, Rahn H, Lochnit G, Robledo M, Evguenieva-Hackenberg E.	RNA Biol	10.1080/15476286.2015.1110673	2016
Phylogeny	Phylogenomics and signature proteins for the alpha proteobacteria and its main groups.	Gupta RS, Mok A.	BMC Microbiol	10.1186/1471-2180-7-106	2007
Metabolism	Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments.	Benndorf D, Vogt C, Jehmlich N, Schmidt Y, Thomas H, Woffendin G, Shevchenko A, Richnow HH, von Bergen M.	Biodegradation	10.1007/s10532-009-9261-3	2009
Transcriptome	Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice.	Fouts DE, Tyler HL, DeBoy RT, Daugherty S, Ren Q, Badger JH, Durkin AS, Huot H, Shrivastava S, Kothari S, Dodson RJ, Mohamoud Y, Khouri H, Roesch LF, Krogfelt KA, Struve C, Triplett EW, Methe BA.	PLoS Genet	10.1371/journal.pgen.1000141	2008
	An extracytoplasmic function sigma factor acts as a general stress response regulator in Sinorhizobium meliloti.	Sauviac L, Philippe H, Phok K, Bruand C.	J Bacteriol	10.1128/jb.00175-07	2007
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
	Estimating the fraction of non-coding RNAs in mammalian transcriptomes.	Xin Y, Quarta G, Gan HH, Schlick T.	Bioinform Biol Insights	10.4137/bbi.s443	2008
Metabolism	Novel toxin-antitoxin system composed of serine protease and AAA-ATPase homologues determines the high level of stability and incompatibility of the tumor-inducing plasmid pTiC58.	Yamamoto S, Kiyokawa K, Tanaka K, Moriguchi K, Suzuki K.	J Bacteriol	10.1128/jb.00124-09	2009
	Analysis of ten Brucella genomes reveals evidence for horizontal gene transfer despite a preferred intracellular lifestyle.	Wattam AR, Williams KP, Snyder EE, Almeida NF, Shukla M, Dickerman AW, Crasta OR, Kenyon R, Lu J, Shallom JM, Yoo H, Ficht TA, Tsolis RM, Munk C, Tapia R, Han CS, Detter JC, Bruce D, Brettin TS, Sobral BW, Boyle SM, Setubal JC.	J Bacteriol	10.1128/jb.01767-08	2009
Genetics	Complete genome of Phenylobacterium zucineum--a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562.	Luo Y, Xu X, Ding Z, Liu Z, Zhang B, Yan Z, Sun J, Hu S, Hu X.	BMC Genomics	10.1186/1471-2164-9-386	2008
	Rapid Identification of Rhizobia by Restriction Fragment Length Polymorphism Analysis of PCR-Amplified 16S rRNA Genes.	Laguerre G, Allard MR, Revoy F, Amarger N.	Appl Environ Microbiol	10.1128/aem.60.1.56-63.1994	1994
	Transcriptomic analysis of Rhizobium leguminosarum biovar viciae in symbiosis with host plants Pisum sativum and Vicia cracca.	Karunakaran R, Ramachandran VK, Seaman JC, East AK, Mouhsine B, Mauchline TH, Prell J, Skeffington A, Poole PS.	J Bacteriol	10.1128/jb.00165-09	2009
Metabolism	A Tar aspartate receptor and Rubisco-like protein substitute biotin in the growth of rhizobial strains.	Vargas-Lagunas C, Mora Y, Aguilar A, Reyes-Gonzalez AR, Arteaga-Ide A, Dunn MF, Encarnacion S, Girard L, Peralta H, Mora J	Microbiology (Reading)	10.1099/mic.0.001130	2022
	Transfer of the Symbiotic Plasmid of Rhizobium etli CFN42 to Endophytic Bacteria Inside Nodules.	Banuelos-Vazquez LA, Cazares D, Rodriguez S, Cervantes-De la Luz L, Sanchez-Lopez R, Castellani LG, Tejerizo GT, Brom S	Front Microbiol	10.3389/fmicb.2020.01752	2020
Genetics	Role of plant compounds in the modulation of the conjugative transfer of pRet42a.	Banuelos-Vazquez LA, Castellani LG, Luchetti A, Romero D, Torres Tejerizo GA, Brom S	PLoS One	10.1371/journal.pone.0238218	2020
Metabolism	A novel way to synthesize pantothenate in bacteria involves beta-alanine synthase present in uracil degradation pathway.	Lopez-Samano M, Beltran LFL, Sanchez-Thomas R, Davalos A, Villasenor T, Garcia-Garcia JD, Garcia-de Los Santos A	Microbiologyopen	10.1002/mbo3.1006	2020
Genetics	Plasmid pSfr64a and the symbiotic plasmid pSfr64b of Sinorhizobium fredii GR64 control each other's conjugative transfer through quorum-sensing elements.	Cervantes L, Miranda-Sanchez F, Torres Tejerizo G, Romero D, Brom S	Plasmid	10.1016/j.plasmid.2019.102443	2019
	Pathways of DNA Transfer to Plants from Agrobacterium tumefaciens and Related Bacterial Species.	Lacroix B, Citovsky V	Annu Rev Phytopathol	10.1146/annurev-phyto-082718-100101	2019
	Exo-Metabolites of Phaseolus vulgaris-Nodulating Rhizobial Strains.	Montes-Grajales D, Esturau-Escofet N, Esquivel B, Martinez-Romero E	Metabolites	10.3390/metabo9060105	2019
	Rhizobium etli Produces Nitrous Oxide by Coupling the Assimilatory and Denitrification Pathways.	Hidalgo-Garcia A, Torres MJ, Salas A, Bedmar EJ, Girard L, Delgado MJ	Front Microbiol	10.3389/fmicb.2019.00980	2019
	Conjugative transfer between Rhizobium etli endosymbionts inside the root nodule.	Banuelos-Vazquez LA, Torres Tejerizo G, Cervantes-De La Luz L, Girard L, Romero D, Brom S	Environ Microbiol	10.1111/1462-2920.14645	2019
Metabolism	The ropAe gene encodes a porin-like protein involved in copper transit in Rhizobium etli CFN42.	Gonzalez-Sanchez A, Cubillas CA, Miranda F, Davalos A, Garcia-de Los Santos A	Microbiologyopen	10.1002/mbo3.573	2017
Enzymology	Biochemical characterization of a novel L-asparaginase from Paenibacillus barengoltzii being suitable for acrylamide reduction in potato chips and mooncakes.	Shi R, Liu Y, Mu Q, Jiang Z, Yang S	Int J Biol Macromol	10.1016/j.ijbiomac.2016.11.115	2016
Genetics	Site-specific bacterial chromosome engineering mediated by IntA integrase from Rhizobium etli.	Hernandez-Tamayo R, Torres-Tejerizo G, Brom S, Romero D	BMC Microbiol	10.1186/s12866-016-0755-y	2016
Metabolism	Transcriptomic analysis of the process of biofilm formation in Rhizobium etli CFN42.	Reyes-Perez A, Vargas Mdel C, Hernandez M, Aguirre-von-Wobeser E, Perez-Rueda E, Encarnacion S	Arch Microbiol	10.1007/s00203-016-1241-5	2016
Metabolism	Distinct Mineral Weathering Behaviors of the Novel Mineral-Weathering Strains Rhizobium yantingense H66 and Rhizobium etli CFN42.	Chen W, Luo L, He LY, Wang Q, Sheng XF	Appl Environ Microbiol	10.1128/AEM.00918-16	2016
Metabolism	Symbiotic potential and survival of native rhizobia kept on different carriers.	Ruiz-Valdiviezo VM, Canseco LM, Suarez LA, Gutierrez-Miceli FA, Dendooven L, Rincon-Rosales R	Braz J Microbiol	10.1590/S1517-838246320140541	2015
Metabolism	Quinol oxidase encoded by cyoABCD in Rhizobium etli CFN42 is regulated by ActSR and is crucial for growth at low pH or low iron conditions.	Lunak ZR, Dale Noel K	Microbiology (Reading)	10.1099/mic.0.000130	2015
Metabolism	The quorum sensing regulator CinR hierarchically regulates two other quorum sensing pathways in ligand-dependent and -independent fashions in Rhizobium etli.	Zheng H, Mao Y, Zhu Q, Ling J, Zhang N, Naseer N, Zhong Z, Zhu J	J Bacteriol	10.1128/JB.00003-15	2015
	Genes encoding conserved hypothetical proteins localized in the conjugative transfer region of plasmid pRet42a from Rhizobium etli CFN42 participate in modulating transfer and affect conjugation from different donors.	Lopez-Fuentes E, Torres-Tejerizo G, Cervantes L, Brom S	Front Microbiol	10.3389/fmicb.2014.00793	2015
Metabolism	A quinol oxidase, encoded by cyoABCD, is utilized to adapt to lower O2 concentrations in Rhizobium etli CFN42.	Lunak ZR, Noel KD	Microbiology (Reading)	10.1099/mic.0.083386-0	2014
Phylogeny	Genomic basis of symbiovar mimosae in Rhizobium etli.	Rogel MA, Bustos P, Santamaria RI, Gonzalez V, Romero D, Cevallos MA, Lozano L, Castro-Mondragon J, Martinez-Romero J, Ormeno-Orrillo E, Martinez-Romero E	BMC Genomics	10.1186/1471-2164-15-575	2014
Phylogeny	Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background.	Torres Tejerizo G, Pistorio M, Althabegoiti MJ, Cervantes L, Wibberg D, Schluter A, Puhler A, Lagares A, Romero D, Brom S	FEMS Microbiol Ecol	10.1111/1574-6941.12325	2014
Metabolism	Phylogenomic analysis of Cation Diffusion Facilitator proteins uncovers Ni2+/Co2+ transporters.	Cubillas C, Vinuesa P, Tabche ML, Garcia-de los Santos A	Metallomics	10.1039/c3mt00204g	2013
Phylogeny	Near-full length sequencing of 16S rDNA and RFLP indicates that Rhizobium etli is the dominant species nodulating Egyptian winter Berseem clover (Trifolium alexandrinum L.).	Shamseldin A, Moawad H, Abd El-Rahim WM, Sadowsky MJ	Syst Appl Microbiol	10.1016/j.syapm.2013.08.002	2013
Metabolism	RepA and RepB exert plasmid incompatibility repressing the transcription of the repABC operon.	Perez-Oseguera A, Cevallos MA	Plasmid	10.1016/j.plasmid.2013.08.001	2013
Metabolism	Characterization of IntA, a bidirectional site-specific recombinase required for conjugative transfer of the symbiotic plasmid of Rhizobium etli CFN42.	Hernandez-Tamayo R, Sohlenkamp C, Puente JL, Brom S, Romero D	J Bacteriol	10.1128/JB.00714-13	2013
Phylogeny	Rhizobium etli taxonomy revised with novel genomic data and analyses.	Lopez-Guerrero MG, Ormeno-Orrillo E, Velazquez E, Rogel MA, Acosta JL, Gonzalez V, Martinez J, Martinez-Romero E	Syst Appl Microbiol	10.1016/j.syapm.2012.06.009	2012
Metabolism	FxkR provides the missing link in the fixL-fixK signal transduction cascade in Rhizobium etli CFN42.	Zamorano-Sanchez D, Reyes-Gonzalez A, Gomez-Hernandez N, Rivera P, Georgellis D, Girard L	Mol Plant Microbe Interact	10.1094/MPMI-05-12-0136-R	2012
	An approach to delineate primers for a group of poorly conserved sequences incorporating the common motif region.	Sahu M, Sahu J, Sahoo S, Dehury B, Sarma K, Sarmah R, Sen P, Modi MK, Barooah M	Bioinformation	10.6026/97320630008181	2012
Phylogeny	Phylogenetic analysis reveals gene conversions in multigene families of rhizobia.	Hernandez-Salmeron JE, Santoyo G	Genet Mol Res	10.4238/vol10-3gmr1118	2011
Genetics	The conjugative plasmid of a bean-nodulating Sinorhizobium fredii strain is assembled from sequences of two Rhizobium plasmids and the chromosome of a Sinorhizobium strain.	Cervantes L, Bustos P, Girard L, Santamaria RI, Davila G, Vinuesa P, Romero D, Brom S	BMC Microbiol	10.1186/1471-2180-11-149	2011
Genetics	repABC-based replication systems of Rhizobium leguminosarum bv. trifolii TA1 plasmids: incompatibility and evolutionary analyses.	Mazur A, Majewska B, Stasiak G, Wielbo J, Skorupska A	Plasmid	10.1016/j.plasmid.2011.04.002	2011
Phylogeny	Housekeeping genes essential for pantothenate biosynthesis are plasmid-encoded in Rhizobium etli and Rhizobium leguminosarum.	Villasenor T, Brom S, Davalos A, Lozano L, Romero D, Los Santos AG	BMC Microbiol	10.1186/1471-2180-11-66	2011
Enzymology	Covalent immobilization of recombinant Rhizobium etli CFN42 xylitol dehydrogenase onto modified silica nanoparticles.	Zhang YW, Tiwari MK, Jeya M, Lee JK	Appl Microbiol Biotechnol	10.1007/s00253-011-3094-9	2011
Genetics	Plasmids with a chromosome-like role in rhizobia.	Landeta C, Davalos A, Cevallos MA, Geiger O, Brom S, Romero D	J Bacteriol	10.1128/JB.01184-10	2011
Metabolism	Regulation and symbiotic role of nirK and norC expression in Rhizobium etli.	Gomez-Hernandez N, Reyes-Gonzalez A, Sanchez C, Mora Y, Delgado MJ, Girard L	Mol Plant Microbe Interact	10.1094/MPMI-07-10-0173	2011
Genetics	Evolutionary dynamics of insertion sequences in relation to the evolutionary histories of the chromosome and symbiotic plasmid genes of Rhizobium etli populations.	Lozano L, Hernandez-Gonzalez I, Bustos P, Santamaria RI, Souza V, Young JP, Davila G, Gonzalez V	Appl Environ Microbiol	10.1128/AEM.01001-10	2010
Metabolism	Characterization of the NifA-RpoN regulon in Rhizobium etli in free life and in symbiosis with Phaseolus vulgaris.	Salazar E, Diaz-Mejia JJ, Moreno-Hagelsieb G, Martinez-Batallar G, Mora Y, Mora J, Encarnacion S	Appl Environ Microbiol	10.1128/AEM.02007-09	2010
Enzymology	Cloning and characterization of a thermostable xylitol dehydrogenase from Rhizobium etli CFN42.	Tiwari MK, Moon HJ, Jeya M, Lee JK	Appl Microbiol Biotechnol	10.1007/s00253-010-2478-6	2010
Genetics	Conserved symbiotic plasmid DNA sequences in the multireplicon pangenomic structure of Rhizobium etli.	Gonzalez V, Acosta JL, Santamaria RI, Bustos P, Fernandez JL, Hernandez Gonzalez IL, Diaz R, Flores M, Palacios R, Mora J, Davila G	Appl Environ Microbiol	10.1128/AEM.02039-09	2010
Phylogeny	Genetic diversity of root-nodulating bacteria isolated from pea (Pisum sativum) in subtropical regions of China.	Yang C, Yang J, Li Y, Zhou J	Sci China C Life Sci	10.1007/s11427-008-0104-y	2008
Genetics	A common genomic framework for a diverse assembly of plasmids in the symbiotic nitrogen fixing bacteria.	Crossman LC, Castillo-Ramirez S, McAnnula C, Lozano L, Vernikos GS, Acosta JL, Ghazoui ZF, Hernandez-Gonzalez I, Meakin G, Walker AW, Hynes MF, Young JP, Downie JA, Romero D, Johnston AW, Davila G, Parkhill J, Gonzalez V	PLoS One	10.1371/journal.pone.0002567	2008
Metabolism	Isolation and characterization of an operon involved in sulfate and sulfite metabolism in Sinorhizobium fredii.	Lu ZJ, Cao YQ, Long WJ, Long ZD, Chen G, Ma QS, Wu B	FEMS Microbiol Lett	10.1111/j.1574-6968.2008.01102.x	2008
Metabolism	Requirement of a plasmid-encoded catalase for survival of Rhizobium etli CFN42 in a polyphenol-rich environment.	Garcia-de Los Santos A, Lopez E, Cubillas CA, Noel KD, Brom S, Romero D	Appl Environ Microbiol	10.1128/AEM.02457-07	2008
Phylogeny	Phylogenetic diversity based on rrs, atpD, recA genes and 16S-23S intergenic sequence analyses of rhizobial strains isolated from Vicia faba and Pisum sativum in Peru.	Santillana N, Ramirez-Bahena MH, Garcia-Fraile P, Velazquez E, Zuniga D	Arch Microbiol	10.1007/s00203-007-0313-y	2007
Genetics	Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli.	Resendis-Antonio O, Reed JL, Encarnacion S, Collado-Vides J, Palsson BO	PLoS Comput Biol	10.1371/journal.pcbi.0030192	2007
Metabolism	Novel reiterated Fnr-type proteins control the production of the symbiotic terminal oxidase cbb3 in Rhizobium etli CFN42.	Granados-Baeza MJ, Gomez-Hernandez N, Mora Y, Delgado MJ, Romero D, Girard L	Mol Plant Microbe Interact	10.1094/MPMI-20-10-1241	2007
Metabolism	Tyrosinase from Rhizobium etli is involved in nodulation efficiency and symbiosis-associated stress resistance.	Pinero S, Rivera J, Romero D, Cevallos MA, Martinez A, Bolivar F, Gosset G	J Mol Microbiol Biotechnol	10.1159/000103595	2007
Metabolism	Rhizavidin from Rhizobium etli: the first natural dimer in the avidin protein family.	Helppolainen SH, Nurminen KP, Maatta JA, Halling KK, Slotte JP, Huhtala T, Liimatainen T, Yla-Herttuala S, Airenne KJ, Narvanen A, Janis J, Vainiotalo P, Valjakka J, Kulomaa MS, Nordlund HR	Biochem J	10.1042/BJ20070076	2007
Metabolism	Thiamine is synthesized by a salvage pathway in Rhizobium leguminosarum bv. viciae strain 3841.	Karunakaran R, Ebert K, Harvey S, Leonard ME, Ramachandran V, Poole PS	J Bacteriol	10.1128/JB.00641-06	2006
Genetics	Diversification of DNA sequences in the symbiotic genome of Rhizobium etli.	Flores M, Morales L, Avila A, Gonzalez V, Bustos P, Garcia D, Mora Y, Guo X, Collado-Vides J, Pinero D, Davila G, Mora J, Palacios R	J Bacteriol	10.1128/JB.187.21.7185-7192.2005	2005
Metabolism	Function of the Rhizobium etli CFN42 nirK gene in nitrite metabolism.	Bueno E, Gomez-Hernandez N, Girard L, Bedmar EJ, Delgado MJ	Biochem Soc Trans	10.1042/BST0330162	2005
Metabolism	Transfer of the symbiotic plasmid of Rhizobium etli CFN42 requires cointegration with p42a, which may be mediated by site-specific recombination.	Brom S, Girard L, Tun-Garrido C, Garcia-de los Santos A, Bustos P, Gonzalez V, Romero D	J Bacteriol	10.1128/JB.186.22.7538-7548.2004	2004
Genetics	Identification of functional mob regions in Rhizobium etli: evidence for self-transmissibility of the symbiotic plasmid pRetCFN42d.	Perez-Mendoza D, Dominguez-Ferreras A, Munoz S, Soto MJ, Olivares J, Brom S, Girard L, Herrera-Cervera JA, Sanjuan J	J Bacteriol	10.1128/JB.186.17.5753-5761.2004	2004
Metabolism	Engineering the nifH promoter region and abolishing poly-beta-hydroxybutyrate accumulation in Rhizobium etli enhance nitrogen fixation in symbiosis with Phaseolus vulgaris.	Peralta H, Mora Y, Salazar E, Encarnacion S, Palacios R, Mora J	Appl Environ Microbiol	10.1128/AEM.70.6.3272-3281.2004	2004
Genetics	The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments.	Gonzalez V, Bustos P, Ramirez-Romero MA, Medrano-Soto A, Salgado H, Hernandez-Gonzalez I, Hernandez-Celis JC, Quintero V, Moreno-Hagelsieb G, Girard L, Rodriguez O, Flores M, Cevallos MA, Collado-Vides J, Romero D, Davila G	Genome Biol	10.1186/gb-2003-4-6-r36	2003
Metabolism	Conjugative transfer of p42a from rhizobium etli CFN42, which is required for mobilization of the symbiotic plasmid, is regulated by quorum sensing.	Tun-Garrido C, Bustos P, Gonzalez V, Brom S	J Bacteriol	10.1128/JB.185.5.1681-1692.2003	2003
Enzymology	BacS: an abundant bacteroid protein in Rhizobium etli whose expression ex planta requires nifA.	Jahn OJ, Davila G, Romero D, Noel KD	Mol Plant Microbe Interact	10.1094/MPMI.2003.16.1.65	2003
Phylogeny	Rhizobium etli CFN42 contains at least three plasmids of the repABC family: a structural and evolutionary analysis.	Cevallos MA, Porta H, Izquierdo J, Tun-Garrido C, Garcia-de-los-Santos A, Davila G, Brom S	Plasmid	10.1016/s0147-619x(02)00119-1	2002
	Conservation of plasmid-encoded traits among bean-nodulating Rhizobium species.	Brom S, Girard L, Garcia-de los Santos A, Sanjuan-Pinilla JM, Olivares J, Sanjuan J	Appl Environ Microbiol	10.1128/AEM.68.5.2555-2561.2002	2002
Metabolism	Regulation of gene expression in response to oxygen in Rhizobium etli: role of FnrN in fixNOQP expression and in symbiotic nitrogen fixation.	Lopez O, Morera C, Miranda-Rios J, Girard L, Romero D, Soberon M	J Bacteriol	10.1128/JB.183.24.6999-7006.2001	2001
Metabolism	Differential regulation of fixN-reiterated genes in Rhizobium etli by a novel fixL-fixK cascade.	Girard L, Brom S, Davalos A, Lopez O, Soberon M, Romero D	Mol Plant Microbe Interact	10.1094/MPMI.2000.13.12.1283	2000
Metabolism	Role of GOGAT in carbon and nitrogen partitioning in Rhizobium etli.	Castillo A, Taboada H, Mendoza A, Valderrama B, Encarnacion S, Mora J	Microbiology (Reading)	10.1099/00221287-146-7-1627	2000
Metabolism	In Rhizobium etli symbiotic plasmid transfer, nodulation competitivity and cellular growth require interaction among different replicons.	Brom S, Garcia-de los Santos A, Cervantes L, Palacios R, Romero D	Plasmid	10.1006/plas.2000.1469	2000
Genetics	Multiresistance genes of Rhizobium etli CFN42.	Gonzalez-Pasayo R, Martinez-Romero E	Mol Plant Microbe Interact	10.1094/MPMI.2000.13.5.572	2000
Genetics	Identification of a plasmid-borne locus in Rhizobium etli KIM5s involved in lipopolysaccharide O-chain biosynthesis and nodulation of Phaseolus vulgaris.	Vinuesa P, Reuhs BL, Breton C, Werner D	J Bacteriol	10.1128/JB.181.18.5606-5614.1999	1999
Genetics	Characterization of two plasmid-borne lps beta loci of Rhizobium etli required for lipopolysaccharide synthesis and for optimal interaction with plants.	Garcia-de los Santos A, Brom S	Mol Plant Microbe Interact	10.1094/MPMI.1997.10.7.891	1997
Genetics	Sequence, localization and characteristics of the replicator region of the symbiotic plasmid of Rhizobium etli.	Ramirez-Romero MA, Bustos P, Girard L, Rodriguez O, Cevallos MA, Davila G	Microbiology (Reading)	10.1099/00221287-143-8-2825	1997
Enzymology	The enhancement of ammonium assimilation in Rhizobium etli prevents nodulation of Phaseolus vulgaris.	Mendoza A, Leija A, Martinez-Romero E, Hernandez G, Mora J	Mol Plant Microbe Interact	10.1094/mpmi-8-0584	1995
Genetics	Discrete amplifiable regions (amplicons) in the symbiotic plasmid of Rhizobium etli CFN42.	Romero D, Martinez-Salazar J, Girard L, Brom S, Davilla G, Palacios R, Flores M, Rodriguez C	J Bacteriol	10.1128/jb.177.4.973-980.1995	1995
Enzymology	Rhizobium etli CFN42 proteomes showed isoenzymes in free-living and symbiosis with a different transcriptional regulation inferred from a transcriptional regulatory network.	Taboada-Castro H, Gil J, Gomez-Caudillo L, Escorcia-Rodriguez JM, Freyre-Gonzalez JA, Encarnacion-Guevara S	Front Microbiol	10.3389/fmicb.2022.947678	2022
	The Role of Two Linear beta-Glucans Activated by c-di-GMP in Rhizobium etli CFN42.	Perez-Mendoza D, Romero-Jimenez L, Rodriguez-Carvajal MA, Lorite MJ, Munoz S, Olmedilla A, Sanjuan J	Biology (Basel)	10.3390/biology11091364	2022
Genetics	Draft genome sequence of type strain HBR26(T) and description of Rhizobium aethiopicum sp. nov.	Aserse AA, Woyke T, Kyrpides NC, Whitman WB, Lindstrom K	Stand Genomic Sci	10.1186/s40793-017-0220-z	2017
Phylogeny	The symbiovar trifolii of Rhizobium bangladeshense and Rhizobium aegyptiacum sp. nov. nodulate Trifolium alexandrinum in Egypt.	Shamseldin A, Carro L, Peix A, Velazquez E, Moawad H, Sadowsky MJ	Syst Appl Microbiol	10.1016/j.syapm.2016.05.002	2016
Phylogeny	Microvirga lupini sp. nov., Microvirga lotononidis sp. nov. and Microvirga zambiensis sp. nov. are alphaproteobacterial root-nodule bacteria that specifically nodulate and fix nitrogen with geographically and taxonomically separate legume hosts.	Ardley JK, Parker MA, De Meyer SE, Trengove RD, O'Hara GW, Reeve WG, Yates RJ, Dilworth MJ, Willems A, Howieson JG	Int J Syst Evol Microbiol	10.1099/ijs.0.035097-0	2011
Phylogeny	Rhizobium tibeticum sp. nov., a symbiotic bacterium isolated from Trigonella archiducis-nicolai (Sirj.) Vassilcz.	Hou BC, Wang ET, Li Y Jr, Jia RZ, Chen WF, Gao Y, Dong RJ, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.009647-0	2009
Phylogeny	Rhizobium mesosinicum sp. nov., isolated from root nodules of three different legumes.	Lin DX, Chen WF, Wang FQ, Hu D, Wang ET, Sui XH, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.006387-0	2009
Phylogeny	Rhizobium fabae sp. nov., a bacterium that nodulates Vicia faba.	Tian CF, Wang ET, Wu LJ, Han TX, Chen WF, Gu CT, Gu JG, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000703-0	2008
Phylogeny	Rhizobium oryzae sp. nov., isolated from the wild rice Oryza alta.	Peng G, Yuan Q, Li H, Zhang W, Tan Z	Int J Syst Evol Microbiol	10.1099/ijs.0.65632-0	2008

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#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119136	Collection of Institut Pasteur ; Curators of the CIP; CIP 104814
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rhizobium etli (DSM 11541, ATCC 51251, CFN 42)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000092045

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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