Rhizobium tropici (DSM 11418, ATCC 49672, CIAT 899)

Name: Rhizobium tropici (DSM 11418, ATCC 49672, CIAT 899)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13624

Type strain

Culture col. no. DSM 11418 ATCC 49672 CIAT 899 HAMBI 1163 OUT 30011 7 more

NCBI tax ID(s) 698761 398

Special Collections DSMZ JCM CIP

History <- K. Lindström <- D. Munns (Rhizobium phaseoli) <- R. Harper <- CIAT IAM 14206 <-- E. Martinez-Romero CIAT 899. CIP <- 2002, P. De Lajudie, Montpellier, France: strain ORS 1163 <- 1989, LMG <- J. Vanderleyden, Rhizobium phaseoli

Links

Rhizobium tropici DSM 11418 is a Gram-negative, rod-shaped bacterium that was isolated from root nodule of Phaseolus vulgaris.

Gram-negative rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 4808

LMG 9503,ATCC 49672,ATCC 700750,DSM 11418,IFO 15247,IAM 14206,CECT 4654,CCT 4160,HAMBI 1163,NBRC 15247,BCRC 15724,CCRC 15724,ICMP 13646,KACC 10636,JCM 21072,CIP 107331,NCPPB 4144

@ref 20215

Last LPSN update 2026-02-09 11:21:12

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Rhizobiaceae

Genus Rhizobium

Species Rhizobium tropici

Full scientific name Rhizobium tropici Martínez-Romero et al. 1991

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
123592	negative	rod-shaped
125438	negative		98.5
125439	negative		98.3

Colony morphology

@ref	Incubation period
4356	3-7 days
123592

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4356	RHIZOBIUM MEDIUM (DSMZ Medium 98)	Medium recipe at MediaDive	Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
33110	MEDIUM 296 - for Rhizobium		Distilled water make up to (800.000 ml);Agar (15.000 g);Yeast extract (1.000 g);Mannitol (10.000 g);Earth extract - M0541 (200.000 ml)
123592	CIP Medium 296	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
4356	positive	growth	30
33110	positive	growth	30
67770	positive	growth	25
123592	positive	growth	25-37
123592	negative	growth	10
123592	negative	growth	41
123592	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.6

Spore formation

@ref	Spore formation	Confidence
125438		90.173
125439		97.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
123592	NaCl	positive	growth	0-4 %
123592	NaCl		growth	6 %
123592	NaCl		growth	8 %
123592	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
123592	16947 ChEBI	citrate	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
123592	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
123592	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
123592	17632 ChEBI	nitrate	-	reduction
123592	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
123592	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
123592	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
123592	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
123592	15688 ChEBI	acetoin		+
123592	17234 ChEBI	glucose			-
68369	35581 ChEBI	indole	-			from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123592	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123592	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	+	3.2.1.23	from API zym
123592	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123592	caseinase	-	3.4.21.50
4356	catalase	+	1.11.1.6
123592	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
4356	cytochrome-c oxidase	+	1.9.3.1
123592	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
123592	gamma-glutamyltransferase	+	2.3.2.2
123592	gelatinase	-
68369	gelatinase	-		from API 20NE
123592	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
123592	lipase	-
68382	lipase (C 14)	-		from API zym
123592	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123592	ornithine decarboxylase	-	4.1.1.17
123592	oxidase	+
123592	phenylalanine ammonia-lyase	-	4.3.1.24
123592	protease	-
68382	trypsin	+	3.4.21.4	from API zym
123592	tryptophan deaminase	-
123592	tween esterase	-
123592	urease	+	3.5.1.5
68369	urease	+	3.5.1.5	from API 20NE
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123592	-	+	+	-	-	+	+	-	+	-	+	+	-	+	-	+	+	+	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
4356	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+/-	-	-	+	+	-	not determinedn.d.

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
123592	not determinedn.d.	-	-	-	+/-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
123592	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	-	-	+	+	+	+	+	+	+	-	+	+	-	-	+	-	-	-	-	+	+	+	+	-	+	-	-	+	-	-	+	+	-	+	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Geographic location
4356	root nodule of Phaseolus vulgaris	Phaseolus vulgaris				South America
67770	Phaseolus vulgaris	Phaseolus vulgaris	Colombia	COL	Middle and South America
123592	Phaseolus vulgaris L.		United States of America	USA	North America	Columbia, Missouri

Taxonmaps

69479

Global distribution of 16S sequence U89832 (>99% sequence identity) for Rhizobiaceae from Microbeatlas

Aquatic Samples	403
Soil Samples	3171
Animal Samples	1252
Plant Samples	1013
Total Samples	5839

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4356	1	Risk group (German classification) According to TRBA 466
123592	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM33088v1 assembly for Rhizobium tropici CIAT 899	complete	GCA_000330885	698761.4	2524023199	698761	98.65

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Rhizobium tropici strain CIAT 899 16S-23S intergenic spacer, partial sequence	AF271645	1072	698761
20218	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	AY491966	1157	698761
20218	Rhizobium tropici CIAT 899 16S ribosomal RNA gene, partial sequence	EU488752	1422	698761
20218	Rhizobium tropici CIAT 899 16S ribosomal RNA gene, partial sequence	HQ850704	1471	698761
20218	Rhizobium leguminosarum 16S ribosomal RNA, partial	M55233	260	385
20218	Rhizobium tropici 16S ribosomal RNA gene, partial sequence	U89832	1474	698761
4356	Rhizobium tropici gene for 16S rRNA, partial sequence, strain: NBRC 15247	AB680818	1406	398
67770	Rhizobium tropici gene for 16S rRNA, strain: IAM 14206	D12798	1434	398
124043	Rhizobium tropici strain LMG 9503 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence	AF345278	1089	398
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491944	1299	754774
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491945	1228	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491946	1219	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491947	1219	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491948	1219	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491949	1201	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491950	1245	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491951	1177	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491952	1248	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491953	1273	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491954	1304	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491955	1313	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491956	1304	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491957	1203	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491958	1153	385
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491959	1081	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491960	1128	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491961	1128	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491962	1204	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491963	1275	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491964	1203	387
124043	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY491965	1257	147700
124043	Rhizobium tropici gene for 16S rRNA, complete sequence, type strain: IFO 15247.	D11344	1464	398
124043	R.tropici (LMG 9503) 16S rRNA gene	X77125	1014	398

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Rhizobium tropici CIAT 899
PATRIC: 698761.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.50	no
125439	motility	BacteriaNetⓘ	yes	63.60	no
125439	gram_stain	BacteriaNetⓘ	negative	98.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rhizobium tropici CIAT 899 CIAT 899
NCBI: GCA_000330885.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	93.61	no
125438	aerobic	aerobicⓘ	yes	86.46	no
125438	spore-forming	spore-formingⓘ	no	90.17	no
125438	thermophilic	thermophileⓘ	no	99.50	no
125438	flagellated	motile2+ⓘ	yes	71.97	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Living plastics from plasticizer-assisted thermal molding of silk protein.	Wang Y, Wu J, Hartzell EJ, Hu W, Mahle R, Li X, Chen Y, Sahoo JK, Chan C, Longo BN, Jacobus CS, Li C, Kaplan DL.	Nat Commun	10.1038/s41467-024-55097-x	2025
	Minimum requirements of flagellation and motility for infection of Agrobacterium sp. strain H13-3 by flagellotropic bacteriophage 7-7-1.	Yen JY, Broadway KM, Scharf BE.	Appl Environ Microbiol	10.1128/aem.01082-12	2012
	Isolation of Insertion Sequence ISRLdTAL1145-1 from a Rhizobium sp. (Leucaena diversifolia) and Distribution of Homologous Sequences Identifying Cross-Inoculation Group Relationships.	Rice DJ, Somasegaran P, Macglashan K, Bohlool BB.	Appl Environ Microbiol	10.1128/aem.60.12.4394-4403.1994	1994
	Observations Concerning Rhizobium tropici Bacteroid Phosphorus Stress Response During Symbiosis With Phaseolus vulgaris.	Botero LM, Al-Niemi T, McDermott TR.	Environ Microbiol Rep	10.1111/1758-2229.70220	2025
Enzymology	WrtF from Rhizobium tropici CIAT 899 is a GT-A fold fucosyltransferase that binds its donor nonproductively.	Forrester TJB, Lin S, Lowary TL, Kimber MS.	Proc Natl Acad Sci U S A	10.1073/pnas.2512460122	2025
	Extracellular Vesicle-Driven Crosstalk between Legume Plants and Rhizobia: The Peribacteroid Space of Symbiosomes as a Protein Trafficking Interface.	Ayala-Garcia P, Herrero-Gomez I, Jimenez-Guerrero I, Otto V, Moreno-de Castro N, Musken M, Jansch L, van Ham M, Vinardell JM, Lopez-Baena FJ, Ollero FJ, Perez-Montano F, Borrero-de Acuna JM.	J Proteome Res	10.1021/acs.jproteome.4c00444	2025
	Specific primers for the rapid detection and quantitation of Rhizobium elite strains of common beans in the plant and environment	Da Silva CGN, Vidal MS, Dourado FdS, Dias ES, Howe AC, Jesus EdC.	Appl Soil Ecol	10.1016/j.apsoil.2023.105156	2024
	Impact of Fe + 2 ions on structural integrity of A0A6P1CI42_RHITR NifA protein from Rhizobium tropici strain CIAT 899.	Yadav PR, Basha SH.	J Biomol Struct Dyn	10.1080/07391102.2023.2256883	2024
	Phosphate-solubilizing bacteria increase maize phosphorus uptake from magnesium-enriched poultry manure biochar	do Amaral Leite A, de Souza Cardoso AA, de Almeida Leite R, Barrera AMV, Queiroz DDL, Viana TC, de Oliveira-Longatti SM, Silva CA, de Souza Moreira FM, Lehmann J, Melo LCA.	Biol Fertil Soils	10.1007/s00374-024-01808-x	2024
	Characterization and Rheological Properties of a New Exopolysaccharide Overproduced by Rhizobium sp. L01.	Huang H, Wen Y, Li Z, Wang B, Li S.	Polymers (Basel)	10.3390/polym17050592	2025
	Rhizobia exopolysaccharides: promising biopolymers for use in the formulation of plant inoculants.	Palhares Farias T, de Melo Castro E, Marucci Pereira Tangerina M, Quintino da Rocha C, Brito Bezerra CW, de Souza Moreira FM.	Braz J Microbiol	10.1007/s42770-022-00824-z	2022
	Rhizobacteria control damping-off and promote growth of lima bean with and without co-inoculation with Rhizobium tropici CIAT899.	de Vasconcelos Martins Ferreira L, de Almeida Leite R, de Carvalho F, Fonseca Colombo Andrade J, Vasconcelos de Medeiros FH, de Souza Moreira FM.	Arch Microbiol	10.1007/s00203-023-03555-3	2023
	Rhizospheric Bacteria of Cover Legumes from Acidic Soils Are Capable of Solubilizing Different Inorganic Phosphates	Rios-Ruiz W, Casique-Huamanguli R, Valdez-Nunez R, Rojas-Garcia J, Calixto-Garcia A, Rios-Reategui F, Pompa-Vasquez D, Padilla-Santa-Cruz E.	Microorganisms		2024
	CRK12: A Key Player in Regulating the Phaseolus vulgaris-Rhizobium tropici Symbiotic Interaction.	Lecona AM, Nanjareddy K, Blanco L, Piazza V, Vera-Nunez JA, Lara M, Arthikala MK.	Int J Mol Sci	10.3390/ijms241411720	2023
	Exogenous Application of ENOD40 and CEP1 Peptides Boosts Symbiotic Signaling Gene Expression and Productivity in Common Bean.	Cantaro-Segura H, Zuniga-Davila D.	Plants (Basel)	10.3390/plants14172786	2025
	Co-inoculation of Rhizobium and Bradyrhizobium promotes growth and yield of common beans	Leite RdA, Martins LC, Ferreira LVdSF, Barbosa ES, Alves BJR, Zilli JE, Araujo AP, Jesus EdC.	Appl Soil Ecol	10.1016/j.apsoil.2021.104356	2022
	Hydroponic Common-Bean Performance under Reduced N-Supply Level and Rhizobia Application.	Karavidas I, Ntatsi G, Ntanasi T, Tampakaki A, Giannopoulou A, Pantazopoulou D, Sabatino L, Iannetta PPM, Savvas D.	Plants (Basel)	10.3390/plants12030646	2023
	Proteome responses of Rhizobium tropici CIAT 899 upon apigenin and salt stress induction	Maximiano MR, Megias E, Santos IR, Santos LS, Ollero FJ, Megias M, Franco OL, Mehta A.	Appl Soil Ecol	10.1016/j.apsoil.2020.103815	2021
Biotechnology	The Biotechnological Potential of Plant Growth-Promoting Rhizobacteria Isolated from Maize (Zea mays L.) Cultivations in the San Martin Region, Peru.	Rios-Ruiz WF, Tarrillo-Chujutalli RE, Rojas-Garcia JC, Tuanama-Reategui C, Pompa-Vasquez DF, Zumaeta-Arevalo CA.	Plants (Basel)	10.3390/plants13152075	2024
	Non-Ionic Osmotic Stress Induces the Biosynthesis of Nodulation Factors and Affects Other Symbiotic Traits in Sinorhizobium fredii HH103.	Fuentes-Romero F, Moyano-Bravo I, Ayala-Garcia P, Rodriguez-Carvajal MA, Perez-Montano F, Acosta-Jurado S, Ollero FJ, Vinardell JM.	Biology (Basel)	10.3390/biology12020148	2023
	Microbes in Agriculture: Prospects and Constraints to Their Wider Adoption and Utilization in Nutrient-Poor Environments.	Mohammed M, Dakora FD.	Microorganisms	10.3390/microorganisms12112225	2024
	A comprehensive, improved protocol for generating common bean (Phaseolus vulgaris L.) transgenic hairy roots and their use in reverse-genetics studies.	Pacheco R, Estrada-Navarrete G, Solis-Miranda J, Nava N, Juarez-Verdayes MA, Ortega-Ortega Y, Quinto C.	PLoS One	10.1371/journal.pone.0294425	2024
	Microbiome of Nodules and Roots of Soybean and Common Bean: Searching for Differences Associated with Contrasting Performances in Symbiotic Nitrogen Fixation.	Bender FR, Alves LC, da Silva JFM, Ribeiro RA, Pauli G, Nogueira MA, Hungria M.	Int J Mol Sci	10.3390/ijms231912035	2022
	Draft Genome Sequence of Rhizobium tropici SARCC-755, a Free-Living Rhizobium That Nodulated and Promoted Growth in Pigeonpea [Cajanus cajan (L.) Millsp.].	Bopape FL, Hassen AI, Swanevelder ZH, Gwata ET.	Microbiol Resour Announc	10.1128/mra.01122-19	2020
	Selected indigenous drought tolerant rhizobium strains as promising biostimulants for common bean in Northern Spain.	Del-Canto A, Sanz-Saez A, Sillero-Martinez A, Mintegi E, Lacuesta M.	Front Plant Sci	10.3389/fpls.2023.1046397	2023
Genetics	Diverse bacterial consortia: key drivers of rhizosoil fertility modulating microbiome functions, plant physiology, nutrition, and soybean grain yield.	Moretti LG, Crusciol CAC, Leite MFA, Momesso L, Bossolani JW, Costa OYA, Hungria M, Kuramae EE.	Environ Microbiome	10.1186/s40793-024-00595-0	2024
	Co-Inoculation of Endophytes Bacillus siamensis TUR07-02b and Priestia megaterium SMBH14-02 Promotes Growth in Rice with Low Doses of Nitrogen Fertilizer.	Rios-Ruiz WF, Tuanama-Reategui C, Huaman-Cordova G, Valdez-Nunez RA.	Plants (Basel)	10.3390/plants12030524	2023
	Nodulation and Yields of Common Bean are Not Affected Either by Fungicides or by the Method of Inoculation	Cardillo BEdS, Oliveira DP, Soares BL, Dias Martins FA, Rufini M, da Silva JS, Ferreira Neto GG, de Andrade MJB, de Souza Moreira FM.	Agron J	10.2134/agronj2018.06.0389	2019
	A microencapsulation approach to design microbial seed coatings to boost wheat seed germination and seedling growth under salt stress.	Gong M, He J, Kong M, Huo Q, Jiang Y, Song J, Han W, Lv G.	Front Plant Sci	10.3389/fpls.2023.1283590	2023
Transcriptome	Transcriptomic Response of Rhizobium leguminosarum to Acidic Stress and Nutrient Limitation Is Versatile and Substantially Influenced by Extrachromosomal Gene Pool.	Zebracki K, Koper P, Wojcik M, Marczak M, Mazur A.	Int J Mol Sci	10.3390/ijms252111734	2024
Pathogenicity	Guidelines for the description of rhizobial symbiovars.	Martinez-Romero E, Peix A, Hungria M, Mousavi SA, Martinez-Romero J, Young P.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006373	2024
	Genome Sequence of Rhizobium jaguaris CCGE525^T, a Strain Isolated from Calliandra grandiflora Nodules from a Rain Forest in Mexico.	Servin-Garciduenas LE, Guerrero G, Rogel-Hernandez MA, Martinez-Romero E.	Microbiol Resour Announc	10.1128/mra.01584-18	2019
	Adaptive Evolution of Rhizobial Symbiosis beyond Horizontal Gene Transfer: From Genome Innovation to Regulation Reconstruction.	Liu S, Jiao J, Tian CF.	Genes (Basel)	10.3390/genes14020274	2023
	Tardigrade secretory proteins protect biological structures from desiccation.	Lim S, Reilly CB, Barghouti Z, Marelli B, Way JC, Silver PA.	Commun Biol	10.1038/s42003-024-06336-w	2024
	Genetic diversity of symbiotic bacteria nodulating common bean (Phaseolus vulgaris) in western Kenya.	Kawaka F, Makonde H, Dida M, Opala P, Ombori O, Maingi J, Muoma J.	PLoS One	10.1371/journal.pone.0207403	2018
	Unraveling the drought-responsive transcriptomes in nodules of two common bean genotypes during biological nitrogen fixation.	da Silva HAP, Caetano VS, Pessoa DDV, Pacheco RS, Meneses CHSG, Simoes-Araujo JL.	Front Plant Sci	10.3389/fpls.2024.1345379	2024
	Evaluation of Legume-Rhizobial Symbiotic Interactions Beyond Nitrogen Fixation That Help the Host Survival and Diversification in Hostile Environments.	Goyal RK, Habtewold JZ.	Microorganisms	10.3390/microorganisms11061454	2023
Phylogeny	Genetic Characterization and Diversity of Rhizobium Isolated From Root Nodules of Mid-Altitude Climbing Bean (Phaseolus vulgaris L.) Varieties.	Koskey G, Mburu SW, Kimiti JM, Ombori O, Maingi JM, Njeru EM.	Front Microbiol	10.3389/fmicb.2018.00968	2018
	Benzo[A]Pyrene Biodegradation by Multiple and Individual Mesophilic Bacteria under Axenic Conditions and in Soil Samples.	Nzila A, Musa MM, Afuecheta E, Al-Thukair A, Sankaran S, Xiang L, Li QX.	Int J Environ Res Public Health	10.3390/ijerph20031855	2023
	Paenibacillus sp. Strain UY79, Isolated from a Root Nodule of Arachis villosa, Displays a Broad Spectrum of Antifungal Activity.	Costa A, Corallo B, Amarelle V, Stewart S, Pan D, Tiscornia S, Fabiano E.	Appl Environ Microbiol	10.1128/aem.01645-21	2022
Genetics	Genomic insights into plant growth promoting rhizobia capable of enhancing soybean germination under drought stress.	Igiehon NO, Babalola OO, Aremu BR.	BMC Microbiol	10.1186/s12866-019-1536-1	2019
	Co-inoculation of rhizobacteria promotes growth, yield, and nutrient contents in soybean and improves soil enzymes and nutrients under drought conditions.	Jabborova D, Kannepalli A, Davranov K, Narimanov A, Enakiev Y, Syed A, Elgorban AM, Bahkali AH, Wirth S, Sayyed RZ, Gafur A.	Sci Rep	10.1038/s41598-021-01337-9	2021
	Enzymes and cellular interplay required for flux of fixed nitrogen to ureides in bean nodules.	Voss L, Heinemann KJ, Herde M, Medina-Escobar N, Witte CP.	Nat Commun	10.1038/s41467-022-33005-5	2022
	Pseudomonas 1-Aminocyclopropane-1-carboxylate (ACC) Deaminase and Its Role in Beneficial Plant-Microbe Interactions.	Glick BR, Nascimento FX.	Microorganisms	10.3390/microorganisms9122467	2021
	Cyanobacteria Application Ameliorates Floral Traits and Outcrossing Rate in Diverse Rice Cytoplasmic Male Sterile Lines.	Hamad HS, Bleih EM, Gewaily EE, Abou Elataa AE, El Sherbiny HA, Abdelhameid NM, Rehan M.	Plants (Basel)	10.3390/plants11243411	2022
	Burkholderia fungorum promotes common bean growth in a dystrophic oxisol	de Oliveira-Longatti SM, Martins de Sousa P, Marciano Marra L, Avelar Ferreira PA, de Souza Moreira FM.	Ann Microbiol		2015
	Co-inoculation Effect of Rhizobia and Plant Growth Promoting Rhizobacteria on Common Bean Growth in a Low Phosphorus Soil.	Korir H, Mungai NW, Thuita M, Hamba Y, Masso C.	Front Plant Sci	10.3389/fpls.2017.00141	2017
	Bradyrhizobium occurrence in nodules of perennial horsegram.	Amaral MB, Dos Santos Lopes T, Feder CB, Ribeiro TG, Pacheco RS, Teixeira TN, de Castro Monteiro E, Ramalho IO, de O Macedo R, Boddey RM, Zilli JE, Alves BJR.	Braz J Microbiol	10.1007/s42770-022-00821-2	2022
	Tolerance, growth and degradation of phenanthrene and benzo[a]pyrene by Rhizobium tropici CIAT 899 in liquid culture medium	Yessica GP, Alejandro A, Ronald FC, Jose AJ, Esperanza MR, Samuel CSJ, Remedios MLM, Ormeno-Orrillo E.	Appl Soil Ecol	10.1016/j.apsoil.2012.09.010	2013
Phylogeny	Complete genomic sequence and phylogenomics analysis of Agrobacterium strain AB2/73: a new Rhizobium species with a unique mega-Ti plasmid.	Hooykaas MJG, Hooykaas PJJ.	BMC Microbiol	10.1186/s12866-021-02358-0	2021
	Circadian Regulation Does Not Optimize Stomatal Behaviour.	Resco de Dios V, Anderegg WRL, Li X, Tissue DT, Bahn M, Landais D, Milcu A, Yao Y, Nolan RH, Roy J, Gessler A.	Plants (Basel)	10.3390/plants9091091	2020
Enzymology	Regulation of Protein Secretion Systems Mediated by Cyclic Diguanylate in Plant-Interacting Bacteria.	Lopez-Baena FJ, Vinardell JM, Medina C.	Front Microbiol	10.3389/fmicb.2019.01289	2019
	The MicroRNA319d/TCP10 Node Regulates the Common Bean - Rhizobia Nitrogen-Fixing Symbiosis.	Martin-Rodriguez JA, Leija A, Formey D, Hernandez G.	Front Plant Sci	10.3389/fpls.2018.01175	2018
	Enhancing the Efficiency of Soybean Inoculant for Nodulation under Multi-Environmental Stress Conditions.	Wongdee J, Yuttavanichakul W, Longthonglang A, Teamtisong K, Boonkerd N, Teaumroong N, Tittabutr P.	Pol J Microbiol	10.33073/pjm-2021-024	2021
	Phosphate solubilizing rhizobacteria isolated from jujube ziziphus lotus plant stimulate wheat germination rate and seedlings growth.	Fahsi N, Mahdi I, Mesfioui A, Biskri L, Allaoui A.	PeerJ	10.7717/peerj.11583	2021
Pathogenicity	Lectin from Canavalia brasiliensis seeds (ConBr) is a valuable biotechnological tool to stimulate the growth of Rhizobium tropici in vitro.	de Vasconcelos MA, Cunha CO, Arruda FV, Carneiro VA, Mercante FM, do Nascimento Neto LG, de Sousa GS, Rocha BA, Teixeira EH, Cavada BS, dos Santos RP.	Molecules	10.3390/molecules17055244	2012
Metabolism	Current Status of and Future Perspectives in Bacterial Degradation of Benzo[a]pyrene.	Nzila A, Musa MM.	Int J Environ Res Public Health	10.3390/ijerph18010262	2020
Phylogeny	Characterization and genus identification of rhizobial symbionts from Caragana arborescens in western Canada.	Moukoumi J, Hynes RK, Dumonceaux TJ, Town J, Belanger N.	Can J Microbiol	10.1139/cjm-2013-0158	2013
	Argonaute5 and its associated small RNAs modulate the transcriptional response during the rhizobia-Phaseolus vulgaris symbiosis.	Sanchez-Correa MDS, Isidra-Arellano MC, Pozas-Rodriguez EA, Reyero-Saavedra MDR, Morales-Salazar A, Del Castillo SML, Sanchez-Flores A, Jimenez-Jacinto V, Reyes JL, Formey D, Valdes-Lopez O.	Front Plant Sci	10.3389/fpls.2022.1034419	2022
Pathogenicity	Rhizobial-Host Interactions and Symbiotic Nitrogen Fixation in Legume Crops Toward Agriculture Sustainability.	Goyal RK, Mattoo AK, Schmidt MA.	Front Microbiol	10.3389/fmicb.2021.669404	2021
Enzymology	The NtrYX Two-Component System of Paracoccus denitrificans Is Required for the Maintenance of Cellular Iron Homeostasis and for a Complete Denitrification under Iron-Limited Conditions.	Olaya-Abril A, Luque-Almagro VM, Hidalgo-Carrillo J, Chicano-Galvez E, Urbano FJ, Moreno-Vivian C, Richardson DJ, Roldan MD.	Int J Mol Sci	10.3390/ijms23169172	2022
	Alleviation of drought stress in the common bean (Phaseolus vulgaris L.) by co-inoculation with Paenibacillus polymyxa and Rhizobium tropici	Figueiredo MVB, Burity HA, Martinez CR, Chanway CP.	Appl Soil Ecol	10.1016/j.apsoil.2008.04.005	2008
	Response of common bean lines to inoculation: comparison between the Rhizobium tropici CIAT899 and the native Rhizobium etli 12a3 and their persistence in Tunisian soils	Tajini F, Drevon JJ, Lamouchi L, Aouani ME, Trabelsi M.	World J Microbiol Biotechnol	10.1007/s11274-007-9490-8	2008
	The Rhizobium-Legume Symbiosis: Co-opting Successful Stress Management.	Hawkins JP, Oresnik IJ.	Front Plant Sci	10.3389/fpls.2021.796045	2021
Metabolism	Actin Depolymerizing Factor Modulates Rhizobial Infection and Nodule Organogenesis in Common Bean.	Ortega-Ortega Y, Carrasco-Castilla J, Juarez-Verdayes MA, Toscano-Morales R, Fonseca-Garcia C, Nava N, Cardenas L, Quinto C.	Int J Mol Sci	10.3390/ijms21061970	2020
	Proton release by nodulated roots varies among common bean genotypes (Phaseolus vulgaris) under phosphorus deficiency	Kouas S, Alkama N, Abdelly C, Drevon JJ.	Journal of plant nutrition and soil science = Zeitschrift fur Pflanzenernahrung und Bodenkunde.	10.1002/jpln.200700114	2008
	Microbial inoculants: reviewing the past, discussing the present and previewing an outstanding future for the use of beneficial bacteria in agriculture.	Santos MS, Nogueira MA, Hungria M.	AMB Express	10.1186/s13568-019-0932-0	2019
Metabolism	Degradation of benzo[a]pyrene by halophilic bacterial strain Staphylococcus haemoliticus strain 10SBZ1A.	Nzila A, Musa MM, Sankara S, Al-Momani M, Xiang L, Li QX.	PLoS One	10.1371/journal.pone.0247723	2021
Metabolism	Metallothionein1A Regulates Rhizobial Infection and Nodulation in Phaseolus vulgaris.	Fonseca-Garcia C, Lopez-Garcia CM, Pacheco R, Armada E, Nava N, Perez-Aguilar R, Solis-Miranda J, Quinto C.	Int J Mol Sci	10.3390/ijms23031491	2022
	Drought Tolerant Enterobacter sp./Leclercia adecarboxylata Secretes Indole-3-acetic Acid and Other Biomolecules and Enhances the Biological Attributes of Vigna radiata (L.) R. Wilczek in Water Deficit Conditions.	Ahmed B, Shahid M, Syed A, Rajput VD, Elgorban AM, Minkina T, Bahkali AH, Lee J.	Biology (Basel)	10.3390/biology10111149	2021
	Plant growth-promoting rhizobacteria for improving nodulation and nitrogen fixation in the common bean (Phaseolus vulgaris L.)	Figueiredo MVB, Martinez CR, Burity HA, Chanway CP.	World J Microbiol Biotechnol	10.1007/s11274-007-9591-4	2008
	Characterization of Rhizobium grahamii extrachromosomal replicons and their transfer among rhizobia.	Althabegoiti MJ, Ormeno-Orrillo E, Lozano L, Torres Tejerizo G, Rogel MA, Mora J, Martinez-Romero E.	BMC Microbiol	10.1186/1471-2180-14-6	2014
	Genotypic differences in symbiotic nitrogen fixation ability and seed yield of climbing bean.	Barbosa N, Portilla E, Buendia HF, Raatz B, Beebe S, Rao I.	Plant Soil	10.1007/s11104-018-3665-y	2018
	A Perspective on Developing a Plant 'Holobiont' for Future Saline Agriculture.	Ren CG, Kong CC, Liu ZY, Zhong ZH, Yang JC, Wang XL, Qin S.	Front Microbiol	10.3389/fmicb.2022.763014	2022
	The Phaseolus vulgaris Receptor-Like Kinase PvFER1 and the Small Peptides PvRALF1 and PvRALF6 Regulate Nodule Number as a Function of Nitrate Availability.	Solis-Miranda J, Juarez-Verdayes MA, Nava N, Rosas P, Leija-Salas A, Cardenas L, Quinto C.	Int J Mol Sci	10.3390/ijms24065230	2023
	Plant-microbe Interactions for Sustainable Agriculture in the Post-genomic Era.	Agrahari RK, Singh P, Koyama H, Panda SK.	Curr Genomics	10.2174/1389202921999200505082116	2020
	Sphingomonas sediminicola Is an Endosymbiotic Bacterium Able to Induce the Formation of Root Nodules in Pea (Pisum sativum L.) and to Enhance Plant Biomass Production.	Mazoyon C, Hirel B, Pecourt A, Catterou M, Gutierrez L, Sarazin V, Dubois F, Duclercq J.	Microorganisms	10.3390/microorganisms11010199	2023
	Isolation, Biochemical and Genomic Characterization of Glyphosate Tolerant Bacteria to Perform Microbe-Assisted Phytoremediation.	Massot F, Gkorezis P, Van Hamme J, Marino D, Trifunovic BS, Vukovic G, d'Haen J, Pintelon I, Giulietti AM, Merini L, Vangronsveld J, Thijs S.	Front Microbiol	10.3389/fmicb.2020.598507	2020
	Genes encoding conserved hypothetical proteins localized in the conjugative transfer region of plasmid pRet42a from Rhizobium etli CFN42 participate in modulating transfer and affect conjugation from different donors.	Lopez-Fuentes E, Torres-Tejerizo G, Cervantes L, Brom S.	Front Microbiol	10.3389/fmicb.2014.00793	2014
Genetics	Genomic features separating ten strains of Neorhizobium galegae with different symbiotic phenotypes.	Osterman J, Mousavi SA, Koskinen P, Paulin L, Lindstrom K.	BMC Genomics	10.1186/s12864-015-1576-3	2015
Genetics	Multifaceted Interactions Between Endophytes and Plant: Developments and Prospects.	Khare E, Mishra J, Arora NK.	Front Microbiol	10.3389/fmicb.2018.02732	2018
Enzymology	Structural and biochemical characterization of the biuret hydrolase (BiuH) from the cyanuric acid catabolism pathway of Rhizobium leguminasorum bv. viciae 3841.	Esquirol L, Peat TS, Wilding M, Lucent D, French NG, Hartley CJ, Newman J, Scott C.	PLoS One	10.1371/journal.pone.0192736	2018
	Differential pH-induced proteins in Rhizobium tropici CIAT 899 and Rhizobium etli CIAT 611	Peick B, Graumann P, Schmid R, Marahiel M, Verner D.	Soil Biol Biochem	10.1016/s0038-0717(98)00072-8	1999
	Co-inoculation effect of Rhizobium and Achillea millefolium L. oil extracts on growth of common bean (Phaseolus vulgaris L.) and soil microbial-chemical properties.	Turan V, Schroder P, Bilen S, Insam H, Fernandez-Delgado Juarez M.	Sci Rep	10.1038/s41598-019-51587-x	2019
	Two Broad Host Range Rhizobial Strains Isolated From Relict Legumes Have Various Complementary Effects on Symbiotic Parameters of Co-inoculated Plants.	Safronova V, Belimov A, Sazanova A, Chirak E, Kuznetsova I, Andronov E, Pinaev A, Tsyganova A, Seliverstova E, Kitaeva A, Tsyganov V, Tikhonovich I.	Front Microbiol	10.3389/fmicb.2019.00514	2019
	Protoplast isolation, transient transformation of leaf mesophyll protoplasts and improved Agrobacterium-mediated leaf disc infiltration of Phaseolus vulgaris: tools for rapid gene expression analysis.	Nanjareddy K, Arthikala MK, Blanco L, Arellano ES, Lara M.	BMC Biotechnol	10.1186/s12896-016-0283-8	2016
	Below-ground-above-ground Plant-microbial Interactions: Focusing on Soybean, Rhizobacteria and Mycorrhizal Fungi.	Igiehon NO, Babalola OO.	Open Microbiol J	10.2174/1874285801812010261	2018
Enzymology	A Bacterial Expression Vector Archive (BEVA) for Flexible Modular Assembly of Golden Gate-Compatible Vectors.	Geddes BA, Mendoza-Suarez MA, Poole PS.	Front Microbiol	10.3389/fmicb.2018.03345	2018
	Phenotypic and genotypic characterization of mutants of the virginiamycin producing strain 899 and its relatedness to the type strain of Streptomyces virginiae.	Lanoot B, Vancanneyt M, Hoste B, Cnockaert MC, Piecq M, Gossele F, Swings J.	Syst Appl Microbiol	10.1016/j.syapm.2004.09.006	2005
Metabolism	A novel way to synthesize pantothenate in bacteria involves beta-alanine synthase present in uracil degradation pathway.	Lopez-Samano M, Beltran LFL, Sanchez-Thomas R, Davalos A, Villasenor T, Garcia-Garcia JD, Garcia-de Los Santos A.	Microbiologyopen	10.1002/mbo3.1006	2020
	Role of plant compounds in the modulation of the conjugative transfer of pRet42a.	Banuelos-Vazquez LA, Castellani LG, Luchetti A, Romero D, Torres Tejerizo GA, Brom S.	PLoS One	10.1371/journal.pone.0238218	2020
	Benefits of inoculation, P fertilizer and manure on yields of common bean and soybean also increase yield of subsequent maize.	Rurangwa E, Vanlauwe B, Giller KE.	Agric Ecosyst Environ	10.1016/j.agee.2017.08.015	2018
	RpuS/R Is a Novel Two-Component Signal Transduction System That Regulates the Expression of the Pyruvate Symporter MctP in Sinorhizobium fredii NGR234.	Ramos AL, Aquino M, Garcia G, Gaspar M, de la Cruz C, Saavedra-Flores A, Brom S, Cervantes-Rivera R, Galindo-Sanchez CE, Hernandez R, Puhar A, Lupas AN, Sepulveda E.	Front Microbiol	10.3389/fmicb.2022.871077	2022
	Phosphate Deficiency Negatively Affects Early Steps of the Symbiosis between Common Bean and Rhizobia.	Isidra-Arellano MC, Reyero-Saavedra MDR, Sanchez-Correa MDS, Pingault L, Sen S, Joshi T, Girard L, Castro-Guerrero NA, Mendoza-Cozatl DG, Libault M, Valdes-Lopez O.	Genes (Basel)	10.3390/genes9100498	2018
	Responses of symbiotic nitrogen-fixing common bean to aluminum toxicity and delineation of nodule responsive microRNAs.	Mendoza-Soto AB, Naya L, Leija A, Hernandez G.	Front Plant Sci	10.3389/fpls.2015.00587	2015
	The Role of Plant-Associated Bacteria, Fungi, and Viruses in Drought Stress Mitigation.	Poudel M, Mendes R, Costa LAS, Bueno CG, Meng Y, Folimonova SY, Garrett KA, Martins SJ.	Front Microbiol	10.3389/fmicb.2021.743512	2021
	Differential tetraspanin genes expression and subcellular localization during mutualistic interactions in Phaseolus vulgaris.	Jimenez-Jimenez S, Santana O, Lara-Rojas F, Arthikala MK, Armada E, Hashimoto K, Kuchitsu K, Salgado S, Aguirre J, Quinto C, Cardenas L.	PLoS One	10.1371/journal.pone.0219765	2019
Genetics	Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum.	Borland S, Oudart A, Prigent-Combaret C, Brochier-Armanet C, Wisniewski-Dye F.	BMC Genomics	10.1186/s12864-015-1962-x	2015
Phylogeny	A comprehensive phylogenetic analysis of copper transporting P_1B ATPases from bacteria of the Rhizobiales order uncovers multiplicity, diversity and novel taxonomic subtypes.	Cubillas C, Miranda-Sanchez F, Gonzalez-Sanchez A, Elizalde JP, Vinuesa P, Brom S, Garcia-de Los Santos A.	Microbiologyopen	10.1002/mbo3.452	2017
	Competition for nodule occupancy on Phaseolus vulgaris by Rhizobium etli and Rhizobium tropici strains can be efficiently monitored in an ultisol during the early stages of growth using a constitutive GUS gene fusion	Streit W, Botero L, Verner D, Beck D.	Soil Biol Biochem	10.1016/0038-0717(95)00003-w	1995
Metabolism	Interaction and Regulation of Carbon, Nitrogen, and Phosphorus Metabolisms in Root Nodules of Legumes.	Liu A, Contador CA, Fan K, Lam HM.	Front Plant Sci	10.3389/fpls.2018.01860	2018
Phylogeny	Genetic diversity and host range of rhizobia nodulating Lotus tenuis in typical soils of the Salado River Basin (Argentina).	Estrella MJ, Munoz S, Soto MJ, Ruiz O, Sanjuan J.	Appl Environ Microbiol	10.1128/aem.02405-08	2009
Metabolism	Circadian rhythms have significant effects on leaf-to-canopy scale gas exchange under field conditions.	Resco de Dios V, Gessler A, Ferrio JP, Alday JG, Bahn M, Del Castillo J, Devidal S, Garcia-Munoz S, Kayler Z, Landais D, Martin-Gomez P, Milcu A, Piel C, Pirhofer-Walzl K, Ravel O, Salekin S, Tissue DT, Tjoelker MG, Voltas J, Roy J.	Gigascience	10.1186/s13742-016-0149-y	2016
Pathogenicity	A transcriptomic analysis of the effect of genistein on Sinorhizobium fredii HH103 reveals novel rhizobial genes putatively involved in symbiosis.	Perez-Montano F, Jimenez-Guerrero I, Acosta-Jurado S, Navarro-Gomez P, Ollero FJ, Ruiz-Sainz JE, Lopez-Baena FJ, Vinardell JM.	Sci Rep	10.1038/srep31592	2016
Genetics	Delineation of mechanistic approaches of rhizosphere microorganisms facilitated plant health and resilience under challenging conditions.	Dukare A, Mhatre P, Maheshwari HS, Bagul S, Manjunatha BS, Khade Y, Kamble U.	3 Biotech	10.1007/s13205-022-03115-4	2022
	Induction of drought tolerance in cucumber plants by a consortium of three plant growth-promoting rhizobacterium strains.	Wang CJ, Yang W, Wang C, Gu C, Niu DD, Liu HX, Wang YP, Guo JH.	PLoS One	10.1371/journal.pone.0052565	2012
	The role of legumes in the sustainable intensification of African smallholder agriculture: Lessons learnt and challenges for the future.	Vanlauwe B, Hungria M, Kanampiu F, Giller KE.	Agric Ecosyst Environ	10.1016/j.agee.2019.106583	2019
	Salt-Tolerant Plant Growth Promoting Rhizobacteria for Enhancing Crop Productivity of Saline Soils.	Egamberdieva D, Wirth S, Bellingrath-Kimura SD, Mishra J, Arora NK.	Front Microbiol	10.3389/fmicb.2019.02791	2019
	High-quality permanent draft genome sequence of Ensifer meliloti strain 4H41, an effective salt- and drought-tolerant microsymbiont of Phaseolus vulgaris.	Mhamdi R, Ardley J, Tian R, Seshadri R, Reddy TB, Pati A, Woyke T, Markowitz V, Ivanova N, Kyrpides N, Reeve W.	Stand Genomic Sci	10.1186/s40793-015-0005-1	2015
	Mechanistic Insights of the Interaction of Plant Growth-Promoting Rhizobacteria (PGPR) With Plant Roots Toward Enhancing Plant Productivity by Alleviating Salinity Stress.	Bhat MA, Kumar V, Bhat MA, Wani IA, Dar FL, Farooq I, Bhatti F, Koser R, Rahman S, Jan AT.	Front Microbiol	10.3389/fmicb.2020.01952	2020
	Thermodynamic matchers for the construction of the cuckoo RNA family.	Reinkensmeier J, Giegerich R.	RNA Biol	10.1080/15476286.2015.1017206	2015
Metabolism	Structures of Exopolysaccharides Involved in Receptor-mediated Perception of Mesorhizobium loti by Lotus japonicus.	Muszynski A, Heiss C, Hjuler CT, Sullivan JT, Kelly SJ, Thygesen MB, Stougaard J, Azadi P, Carlson RW, Ronson CW.	J Biol Chem	10.1074/jbc.m116.743856	2016
Metabolism	Manganese scavenging and oxidative stress response mediated by type VI secretion system in Burkholderia thailandensis.	Si M, Zhao C, Burkinshaw B, Zhang B, Wei D, Wang Y, Dong TG, Shen X.	Proc Natl Acad Sci U S A	10.1073/pnas.1614902114	2017
	An RNA-Seq based gene expression atlas of the common bean.	O'Rourke JA, Iniguez LP, Fu F, Bucciarelli B, Miller SS, Jackson SA, McClean PE, Li J, Dai X, Zhao PX, Hernandez G, Vance CP.	BMC Genomics	10.1186/1471-2164-15-866	2014
Phylogeny	Limited genetic diversity of Brucella spp.	Gandara B, Merino AL, Rogel MA, Martinez-Romero E.	J Clin Microbiol	10.1128/jcm.39.1.235-240.2001	2001
Genetics	The combination of functional metagenomics and an oil-fed enrichment strategy revealed the phylogenetic diversity of lipolytic bacteria overlooked by the cultivation-based method.	Narihiro T, Suzuki A, Yoshimune K, Hori T, Hoshino T, Yumoto I, Yokota A, Kimura N, Kamagata Y.	Microbes Environ	10.1264/jsme2.me14002	2014
Phylogeny	A new species of Devosia that forms a unique nitrogen-fixing root-nodule symbiosis with the aquatic legume Neptunia natans (L.f.) druce.	Rivas R, Velazquez E, Willems A, Vizcaino N, Subba-Rao NS, Mateos PF, Gillis M, Dazzo FB, Martinez-Molina E.	Appl Environ Microbiol	10.1128/aem.68.11.5217-5222.2002	2002
	Functional Genomics Approaches to Studying Symbioses between Legumes and Nitrogen-Fixing Rhizobia.	Lardi M, Pessi G.	High Throughput	10.3390/ht7020015	2018
	Uptake Hydrogenase (Hup) in Common Bean (Phaseolus vulgaris) Symbioses.	Navarro RB, Vargas AA, Schroder EC, van Berkum P.	Appl Environ Microbiol	10.1128/aem.59.12.4161-4165.1993	1993
Metabolism	Fermentative and aerobic metabolism in Rhizobium etli.	Encarnacion S, Dunn M, Willms K, Mora J.	J Bacteriol	10.1128/jb.177.11.3058-3066.1995	1995
	The Absence of the N-acyl-homoserine-lactone Autoinducer Synthase Genes traI and ngrI Increases the Copy Number of the Symbiotic Plasmid in Sinorhizobium fredii NGR234.	Grote J, Krysciak D, Petersen K, Gullert S, Schmeisser C, Forstner KU, Krishnan HB, Schwalbe H, Kubatova N, Streit WR.	Front Microbiol	10.3389/fmicb.2016.01858	2016
Enzymology	Preferential association of endophytic bradyrhizobia with different rice cultivars and its implications for rice endophyte evolution.	Piromyou P, Greetatorn T, Teamtisong K, Okubo T, Shinoda R, Nuntakij A, Tittabutr P, Boonkerd N, Minamisawa K, Teaumroong N.	Appl Environ Microbiol	10.1128/aem.04253-14	2015
	Cytochrome aa3 gene regulation in members of the family Rhizobiaceae: comparison of copper and oxygen effects in Bradyrhizobium japonicum and Rhizobium tropici.	Gabel C, Bittinger MA, Maier RJ.	Appl Environ Microbiol	10.1128/aem.60.1.141-148.1994	1994
Metabolism	Identification and characterization of a periplasmic aminoacyl-phosphatidylglycerol hydrolase responsible for Pseudomonas aeruginosa lipid homeostasis.	Arendt W, Groenewold MK, Hebecker S, Dickschat JS, Moser J.	J Biol Chem	10.1074/jbc.m113.482935	2013
Metabolism	Heme compounds as iron sources for nonpathogenic Rhizobium bacteria.	Noya F, Arias A, Fabiano E.	J Bacteriol	10.1128/jb.179.9.3076-3078.1997	1997
Phylogeny	Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil.	Rosch C, Mergel A, Bothe H.	Appl Environ Microbiol	10.1128/aem.68.8.3818-3829.2002	2002
Enzymology	Prey range characterization, ribotyping, and diversity of soil and rhizosphere Bdellovibrio spp. isolated on phytopathogenic bacteria.	Jurkevitch E, Minz D, Ramati B, Barel G.	Appl Environ Microbiol	10.1128/aem.66.6.2365-2371.2000	2000
Enzymology	Specific detection of Bradyrhizobium and Rhizobium strains colonizing rice (Oryza sativa) roots by 16S-23S ribosomal DNA intergenic spacer-targeted PCR.	Tan Z, Hurek T, Vinuesa P, Muller P, Ladha JK, Reinhold-Hurek B.	Appl Environ Microbiol	10.1128/aem.67.8.3655-3664.2001	2001
	Effect of canavanine from alfalfa seeds on the population biology of bacillus cereus	Emmert EAB, Milner JL, Lee JC, Pulvermacher KL, Olivares HA, Clardy J, Handelsman J.	Appl Environ Microbiol	10.1128/aem.64.12.4683-4688.1998	1998
	Rapid Identification of Rhizobia by Restriction Fragment Length Polymorphism Analysis of PCR-Amplified 16S rRNA Genes.	Laguerre G, Allard MR, Revoy F, Amarger N.	Appl Environ Microbiol	10.1128/aem.60.1.56-63.1994	1994
	Assessment of competitiveness of rhizobia infecting Galega orientalis on the basis of plant yield, nodulation, and strain identification by antibiotic resistance and PCR.	Tas E, Leinonen P, Saano A, Rasanen LA, Kaijalainen S, Piippola S, Hakola S, Lindstrom K.	Appl Environ Microbiol	10.1128/aem.62.2.529-535.1996	1996
Phylogeny	Typing of rhizobia by PCR DNA fingerprinting and PCR-restriction fragment length polymorphism analysis of chromosomal and symbiotic gene regions: application to Rhizobium leguminosarum and its different biovars.	Laguerre G, Mavingui P, Allard MR, Charnay MP, Louvrier P, Mazurier SI, Rigottier-Gois L, Amarger N.	Appl Environ Microbiol	10.1128/aem.62.6.2029-2036.1996	1996
	A Comprehensive Study of Biohopanoid Production in Alphaproteobacteria: Biosynthetic, Chemotaxonomical, and Geobiological Implications.	Sinninghe Damste JS, Koenen M, Thiel V, Richter N, Hopmans EC, Bale NJ.	Geobiology	10.1111/gbi.70038	2025
Metabolism	Priming of defense-related genes in Brassica oleracea var. capitata using concentrated metabolites produced by Rhizobium tropici CIAT 899.	Santos IR, Ribeiro DG, Tavora FTPK, Maximiano MR, Rabelo AC, Rios TB, Reis Junior FB, Megias M, Silva LP, Mehta A	Braz J Microbiol	10.1007/s42770-022-00722-4	2022
	The nodD1 Gene of Sinorhizobium fredii HH103 Restores Nodulation Capacity on Bean in a Rhizobium tropici CIAT 899 nodD1/nodD2 Mutant, but the Secondary Symbiotic Regulators nolR, nodD2 or syrM Prevent HH103 to Nodulate with This Legume.	Fuentes-Romero F, Navarro-Gomez P, Ayala-Garcia P, Moyano-Bravo I, Lopez-Baena FJ, Perez-Montano F, Ollero-Marquez FJ, Acosta-Jurado S, Vinardell JM	Microorganisms	10.3390/microorganisms10010139	2022
Phylogeny	Isolation and Characterization of High-Efficiency Rhizobia From Western Kenya Nodulating With Common Bean.	Wekesa CS, Furch ACU, Oelmuller R	Front Microbiol	10.3389/fmicb.2021.697567	2021
Metabolism	OnfD, an AraC-Type Transcriptional Regulator Encoded by Rhizobium tropici CIAT 899 and Involved in Nod Factor Synthesis and Symbiosis.	Del Cerro P, Ayala-Garcia P, Buzon P, Castells-Graells R, Lopez-Baena FJ, Ollero FJ, Perez-Montano F	Appl Environ Microbiol	10.1128/AEM.01297-20	2020
Metabolism	Hydrogen-uptake genes improve symbiotic efficiency in common beans (Phaseolus vulgaris L.).	Torres AR, Brito B, Imperial J, Palacios JM, Ciampitti IA, Ruiz-Argueso T, Hungria M	Antonie Van Leeuwenhoek	10.1007/s10482-019-01381-6	2020
	A bioinspired approach to engineer seed microenvironment to boost germination and mitigate soil salinity.	Zvinavashe AT, Lim E, Sun H, Marelli B	Proc Natl Acad Sci U S A	10.1073/pnas.1915902116	2019
Phylogeny	Genetic Interaction Studies Reveal Superior Performance of Rhizobium tropici CIAT899 on a Range of Diverse East African Common Bean (Phaseolus vulgaris L.) Genotypes.	Gunnabo AH, Geurts R, Wolde-Meskel E, Degefu T, Giller KE, van Heerwaarden J	Appl Environ Microbiol	10.1128/AEM.01763-19	2019
	Regulation of hsnT, nodF and nodE genes in Rhizobium tropici CIAT 899 and their roles in the synthesis of Nod factors and in the symbiosis.	Gomes DF, Tullio LD, Del Cerro P, Nakatani AS, Rolla-Santos AAP, Gil-Serrano A, Megias M, Ollero FJ, Hungria M	Microbiology (Reading)	10.1099/mic.0.000824	2019
	Exo-Metabolites of Phaseolus vulgaris-Nodulating Rhizobial Strains.	Montes-Grajales D, Esturau-Escofet N, Esquivel B, Martinez-Romero E	Metabolites	10.3390/metabo9060105	2019
Metabolism	Rhizobium tropici CIAT 899 copA gene plays a fundamental role in copper tolerance in both free life and symbiosis with Phaseolus vulgaris.	Elizalde-Diaz JP, Hernandez-Lucas I, Medina-Aparicio L, Davalos A, Leija A, Alvarado-Affantranger X, Garcia-Garcia JD, Hernandez G, Garcia-de Los Santos A	Microbiology (Reading)	10.1099/mic.0.000803	2019
Metabolism	Osmotic stress activates nif and fix genes and induces the Rhizobium tropici CIAT 899 Nod factor production via NodD2 by up-regulation of the nodA2 operon and the nodA3 gene.	Del Cerro P, Megias M, Lopez-Baena FJ, Gil-Serrano A, Perez-Montano F, Ollero FJ	PLoS One	10.1371/journal.pone.0213298	2019
Metabolism	ACC deaminase plays a major role in Pseudomonas fluorescens YsS6 ability to promote the nodulation of Alpha- and Betaproteobacteria rhizobial strains.	Nascimento FX, Tavares MJ, Franck J, Ali S, Glick BR, Rossi MJ	Arch Microbiol	10.1007/s00203-019-01649-5	2019
Metabolism	Revealing the roles of y4wF and tidC genes in Rhizobium tropici CIAT 899: biosynthesis of indolic compounds and impact on symbiotic properties.	Tullio LD, Nakatani AS, Gomes DF, Ollero FJ, Megias M, Hungria M	Arch Microbiol	10.1007/s00203-018-1607-y	2018
	Response of common bean (Phaseolus vulgaris L.) to nitrogen, phosphorus and rhizobia inoculation across variable soils in Zimbabwe.	Chekanai V, Chikowo R, Vanlauwe B	Agric Ecosyst Environ	10.1016/j.agee.2018.08.010	2018
Pathogenicity	[Responses of the common bean (Phaseolus vulgaris L.) and Rhizobium tropici CIAT899 symbiosystem to induced allelopathy by Ipomoea purpurea L. Roth].	Perez-Peralta PJ, Ferrera-Cerrato R, Alarcon A, Trejo-Tellez LI, Cruz-Ortega R, Silva-Rojas HV	Rev Argent Microbiol	10.1016/j.ram.2018.01.006	2018
Stress	Dissecting the Acid Stress Response of Rhizobium tropici CIAT 899.	Guerrero-Castro J, Lozano L, Sohlenkamp C	Front Microbiol	10.3389/fmicb.2018.00846	2018
Phylogeny	Genetic diversity and symbiotic effectiveness of Phaseolus vulgaris-nodulating rhizobia in Kenya.	Mwenda GM, O'Hara GW, De Meyer SE, Howieson JG, Terpolilli JJ	Syst Appl Microbiol	10.1016/j.syapm.2018.02.001	2018
Stress	Co-inoculation of maize with Azospirillum brasilense and Rhizobium tropici as a strategy to mitigate salinity stress.	Fukami J, de la Osa C, Ollero FJ, Megias M, Hungria M	Funct Plant Biol	10.1071/FP17167	2018
Metabolism	The expression of an exogenous ACC deaminase by the endophyte Serratia grimesii BXF1 promotes the early nodulation and growth of common bean.	Tavares MJ, Nascimento FX, Glick BR, Rossi MJ	Lett Appl Microbiol	10.1111/lam.12847	2018
	Transcriptomic Studies of the Effect of nod Gene-Inducing Molecules in Rhizobia: Different Weapons, One Purpose.	Jimenez-Guerrero I, Acosta-Jurado S, Del Cerro P, Navarro-Gomez P, Lopez-Baena FJ, Ollero FJ, Vinardell JM, Perez-Montano F	Genes (Basel)	10.3390/genes9010001	2017
Metabolism	The Rhizobium tropici CIAT 899 NodD2 protein regulates the production of Nod factors under salt stress in a flavonoid-independent manner.	Del Cerro P, Perez-Montano F, Gil-Serrano A, Lopez-Baena FJ, Megias M, Hungria M, Ollero FJ	Sci Rep	10.1038/srep46712	2017
Biotechnology	Impact of rhizobial inoculation and reduced N supply on biomass production and biological N2 fixation in common bean grown hydroponically.	Kontopoulou CK, Liasis E, Iannetta PP, Tampakaki A, Savvas D	J Sci Food Agric	10.1002/jsfa.8202	2017
Metabolism	Indole-3-acetic acid production via the indole-3-pyruvate pathway by plant growth promoter Rhizobium tropici CIAT 899 is strongly inhibited by ammonium.	Imada EL, Rolla Dos Santos AAP, Oliveira ALM, Hungria M, Rodrigues EP	Res Microbiol	10.1016/j.resmic.2016.10.010	2016
Phylogeny	Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.	Cardoso AA, Andraus MP, Borba TC, Martin-Didonet CC, Ferreira EP	Braz J Microbiol	10.1016/j.bjm.2016.09.002	2016
Stress	Genome of Rhizobium leucaenae strains CFN 299(T) and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions.	Ormeno-Orrillo E, Gomes DF, Del Cerro P, Vasconcelos AT, Canchaya C, Almeida LG, Mercante FM, Ollero FJ, Megias M, Hungria M	BMC Genomics	10.1186/s12864-016-2859-z	2016
	NrcR, a New Transcriptional Regulator of Rhizobium tropici CIAT 899 Involved in the Legume Root-Nodule Symbiosis.	Del Cerro P, Rolla-Santos AA, Valderrama-Fernandez R, Gil-Serrano A, Bellogin RA, Gomes DF, Perez-Montano F, Megias M, Hungria M, Ollero FJ	PLoS One	10.1371/journal.pone.0154029	2016
Transcriptome	RNA-seq analysis of the Rhizobium tropici CIAT 899 transcriptome shows similarities in the activation patterns of symbiotic genes in the presence of apigenin and salt.	Perez-Montano F, Del Cerro P, Jimenez-Guerrero I, Lopez-Baena FJ, Cubo MT, Hungria M, Megias M, Ollero FJ	BMC Genomics	10.1186/s12864-016-2543-3	2016
	Maize growth promotion by inoculation with Azospirillum brasilense and metabolites of Rhizobium tropici enriched on lipo-chitooligosaccharides (LCOs).	Marks BB, Megias M, Ollero FJ, Nogueira MA, Araujo RS, Hungria M	AMB Express	10.1186/s13568-015-0154-z	2015
Metabolism	Opening the "black box" of nodD3, nodD4 and nodD5 genes of Rhizobium tropici strain CIAT 899.	del Cerro P, Rolla-Santos AA, Gomes DF, Marks BB, del Rosario Espuny M, Rodriguez-Carvajal MA, Soria-Diaz ME, Nakatani AS, Hungria M, Ollero FJ, Megias M	BMC Genomics	10.1186/s12864-015-2033-z	2015
	Site-specific distribution and competitive ability of indigenous bean-nodulating rhizobia isolated from organic fields in Minnesota.	Wongphatcharachai M, Wang P, Staley C, Chun CL, Ferguson JA, Moncada KM, Sheaffer CC, Sadowsky MJ	J Biotechnol	10.1016/j.jbiotec.2015.09.009	2015
Pathogenicity	Regulatory nodD1 and nodD2 genes of Rhizobium tropici strain CIAT 899 and their roles in the early stages of molecular signaling and host-legume nodulation.	del Cerro P, Rolla-Santos AA, Gomes DF, Marks BB, Perez-Montano F, Rodriguez-Carvajal MA, Nakatani AS, Gil-Serrano A, Megias M, Ollero FJ, Hungria M	BMC Genomics	10.1186/s12864-015-1458-8	2015
Metabolism	The nodule conductance to O(2) diffusion increases with phytase activity in N(2)-fixing Phaseolus vulgaris L.	Lazali M, Drevon JJ	Plant Physiol Biochem	10.1016/j.plaphy.2014.03.023	2014
Metabolism	Localization of the Bacillus subtilis beta-propeller phytase transcripts in nodulated roots of Phaseolus vulgaris supplied with phytate.	Maougal RT, Bargaz A, Sahel C, Amenc L, Djekoun A, Plassard C, Drevon JJ	Planta	10.1007/s00425-013-2023-9	2014
Metabolism	Discrimination against 15N among recombinant inbred lines of Phaseolus vulgaris L. contrasting in phosphorus use efficiency for nitrogen fixation.	Lazali M, Bargaz A, Carlsson G, Ounane SM, Drevon JJ	J Plant Physiol	10.1016/j.jplph.2013.07.009	2013
Enzymology	Effect of leguminous lectins on the growth of Rhizobium tropici CIAT899.	de Vasconcelos MA, Cunha CO, Arruda FV, Carneiro VA, Bastos RM, Mercante FM, do Nascimento KS, Cavada BS, dos Santos RP, Teixeira EH	Molecules	10.3390/molecules18055792	2013
Metabolism	A phytase gene is overexpressed in root nodules cortex of Phaseolus vulgaris-rhizobia symbiosis under phosphorus deficiency.	Lazali M, Zaman-Allah M, Amenc L, Ounane G, Abadie J, Drevon JJ	Planta	10.1007/s00425-013-1893-1	2013
Pathogenicity	Fast induction of biosynthetic polysaccharide genes lpxA, lpxE, and rkpI of Rhizobium sp. strain PRF 81 by common bean seed exudates is indicative of a key role in symbiosis.	Oliveira LR, Rodrigues EP, Marcelino-Guimaraes FC, Oliveira AL, Hungria M	Funct Integr Genomics	10.1007/s10142-013-0322-7	2013
	Biotechnological potential of rhizobial metabolites to enhance the performance of Bradyrhizobium spp. and Azospirillum brasilense inoculants with soybean and maize.	Marks BB, Megias M, Nogueira MA, Hungria M	AMB Express	10.1186/2191-0855-3-21	2013
Metabolism	Differential expression of trehalose 6-P phosphatase and ascorbate peroxidase transcripts in nodule cortex of Phaseolus vulgaris and regulation of nodule O2 permeability.	Bargaz A, Lazali M, Amenc L, Abadie J, Ghoulam C, Farissi M, Faghire M, Drevon JJ	Planta	10.1007/s00425-013-1877-1	2013
Genetics	Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.).	Ormeno-Orrillo E, Menna P, Almeida LG, Ollero FJ, Nicolas MF, Pains Rodrigues E, Shigueyoshi Nakatani A, Silva Batista JS, Oliveira Chueire LM, Souza RC, Ribeiro Vasconcelos AT, Megias M, Hungria M, Martinez-Romero E	BMC Genomics	10.1186/1471-2164-13-735	2012
Pathogenicity	High NaCl concentrations induce the nod genes of Rhizobium tropici CIAT899 in the absence of flavonoid inducers.	Guasch-Vidal B, Estevez J, Dardanelli MS, Soria-Diaz ME, de Cordoba FF, Balog CI, Manyani H, Gil-Serrano A, Thomas-Oates J, Hensbergen PJ, Deelder AM, Megias M, van Brussel AA	Mol Plant Microbe Interact	10.1094/MPMI-09-12-0213-R	2013
Phylogeny	Production of extracellular biopolymers and identification of intracellular proteins and Rhizobium tropici.	Oliveira J, Figueiredo M, Silva M, Malta M, Vendruscolo C, Almeida H	Curr Microbiol	10.1007/s00284-012-0211-7	2012
Enzymology	A phosphoenol pyruvate phosphatase transcript is induced in the root nodule cortex of Phaseolus vulgaris under conditions of phosphorus deficiency.	Bargaz A, Ghoulam C, Amenc L, Lazali M, Faghire M, Abadie J, Drevon JJ	J Exp Bot	10.1093/jxb/ers151	2012
Metabolism	Is genotypic variation of H(+) efflux under P deficiency linked with nodulated-root respiration of N(2) fixing common-bean (Phaseolus vulgaris L.)?	Alkama N, Ounane G, Drevon JJ	J Plant Physiol	10.1016/j.jplph.2012.03.013	2012
	Combined inoculation with Glomus intraradices and Rhizobium tropici CIAT899 increases phosphorus use efficiency for symbiotic nitrogen fixation in common bean (Phaseolus vulgaris L.).	Tajini F, Trabelsi M, Drevon JJ	Saudi J Biol Sci	10.1016/j.sjbs.2011.11.003	2011
Phylogeny	[Phenotypic and genotypic characterization of twelve rhizobial isolates from different regions of Venezuela].	Eugenia Marquina M, Enrique Gonzalez N, Castro Y	Rev Biol Trop		2011
Metabolism	Hydroxylated ornithine lipids increase stress tolerance in Rhizobium tropici CIAT899.	Vences-Guzman MA, Guan Z, Ormeno-Orrillo E, Gonzalez-Silva N, Lopez-Lara IM, Martinez-Romero E, Geiger O, Sohlenkamp C	Mol Microbiol	10.1111/j.1365-2958.2011.07535.x	2011
Phylogeny	Biosynthesis of compatible solutes in rhizobial strains isolated from Phaseolus vulgaris nodules in Tunisian fields.	Fernandez-Aunion C, Hamouda TB, Iglesias-Guerra F, Argandona M, Reina-Bueno M, Nieto JJ, Aouani ME, Vargas C	BMC Microbiol	10.1186/1471-2180-10-192	2010
Enzymology	Experimental evidences of pSym transfer in a native peanut-associated rhizobia.	Ibanez F, Reinoso H, Fabra A	Microbiol Res	10.1016/j.micres.2009.08.004	2009
Metabolism	Global changes in the transcript and metabolic profiles during symbiotic nitrogen fixation in phosphorus-stressed common bean plants.	Hernandez G, Valdes-Lopez O, Ramirez M, Goffard N, Weiller G, Aparicio-Fabre R, Fuentes SI, Erban A, Kopka J, Udvardi MK, Vance CP	Plant Physiol	10.1104/pp.109.143842	2009
Metabolism	An alternative succinate (2-oxoglutarate) transport system in Rhizobium tropici is induced in nodules of Phaseolus vulgaris.	Batista S, Patriarca EJ, Tate R, Martinez-Drets G, Gill PR	J Bacteriol	10.1128/JB.00252-09	2009
Metabolism	Different and new Nod factors produced by Rhizobium tropici CIAT899 following Na+ stress.	Estevez J, Soria-Diaz ME, de Cordoba FF, Moron B, Manyani H, Gil A, Thomas-Oates J, van Brussel AA, Dardanelli MS, Sousa C, Megias M	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01540.x	2009
Metabolism	Glutathione produced by Rhizobium tropici is important to prevent early senescence in common bean nodules.	Muglia C, Comai G, Spegazzini E, Riccillo PM, Aguilar OM	FEMS Microbiol Lett	10.1111/j.1574-6968.2008.01285.x	2008
Genetics	Mutations in lipopolysaccharide biosynthetic genes impair maize rhizosphere and root colonization of Rhizobium tropici CIAT899.	Ormeno-Orrillo E, Rosenblueth M, Luyten E, Vanderleyden J, Martinez-Romero E	Environ Microbiol	10.1111/j.1462-2920.2007.01541.x	2008
Metabolism	The lipid lysyl-phosphatidylglycerol is present in membranes of Rhizobium tropici CIAT899 and confers increased resistance to polymyxin B under acidic growth conditions.	Sohlenkamp C, Galindo-Lagunas KA, Guan Z, Vinuesa P, Robinson S, Thomas-Oates J, Raetz CR, Geiger O	Mol Plant Microbe Interact	10.1094/MPMI-20-11-1421	2007
Metabolism	Rhizobium tropici response to acidity involves activation of glutathione synthesis.	Muglia CI, Grasso DH, Aguilar OM	Microbiology (Reading)	10.1099/mic.0.2006/003483-0	2007
Genetics	Genotypic variation of N2-fixing common bean (Phaseolus vulgaris L.) in response to iron deficiency.	Krouma A, Drevon JJ, Abdelly C	J Plant Physiol	10.1016/j.jplph.2005.08.013	2005
Genetics	A ClC chloride channel homolog and ornithine-containing membrane lipids of Rhizobium tropici CIAT899 are involved in symbiotic efficiency and acid tolerance.	Rojas-Jimenez K, Sohlenkamp C, Geiger O, Martinez-Romero E, Werner D, Vinuesa P	Mol Plant Microbe Interact	10.1094/MPMI-18-1175	2005
Enzymology	Low pH changes the profile of nodulation factors produced by Rhizobium tropici CIAT899.	Moron B, Soria-Diaz ME, Ault J, Verroios G, Noreen S, Rodriguez-Navarro DN, Gil-Serrano A, Thomas-Oates J, Megias M, Sousa C	Chem Biol	10.1016/j.chembiol.2005.06.014	2005
Metabolism	An abundance of nodulation factors.	Kannenberg E, Carlson RW	Chem Biol	10.1016/j.chembiol.2005.09.004	2005
Phenotype	GuaB activity is required in Rhizobium tropici during the early stages of nodulation of determinate nodules but is dispensable for the Sinorhizobium meliloti-alfalfa symbiotic interaction.	Collavino M, Riccillo PM, Grasso DH, Crespi M, Aguilar M	Mol Plant Microbe Interact	10.1094/MPMI-18-0742	2005
Genetics	Nodule conductance varied among common bean (Phaseolus vulgaris) genotypes under phosphorus deficiency.	Jebara M, Aouani ME, Payre H, Drevon JJ	J Plant Physiol	10.1016/j.jplph.2004.06.015	2005
Phylogeny	High salt and high pH tolerance of new isolated Rhizobium etli strains from Egyptian soils.	Shamseldin A, Werner D	Curr Microbiol	10.1007/s00284-004-4391-7	2005
Enzymology	Nitrogenase and antioxidant enzyme activities in Phaseolus vulgaris nodules formed by Rhizobium tropici isogenic strains with varying tolerance to salt stress.	Tejera NA, Campos R, Sanjuan J, Lluch C	J Plant Physiol	10.1078/0176-1617-01050	2004
Genetics	Genetic analysis of a pH-regulated operon from Rhizobium tropici CIAT899 involved in acid tolerance and nodulation competitiveness.	Vinuesa P, Neumann-Silkow F, Pacios-Bras C, Spaink HP, Martinez-Romero E, Werner D	Mol Plant Microbe Interact	10.1094/MPMI.2003.16.2.159	2003
	Co-inoculation with Bacillus sp. CECT 450 improves nodulation in Phaseolus vulgaris L.	Camacho M, Santamaria C, Temprano F, Rodriguez-Navarro DN, Daza A	Can J Microbiol	10.1139/w01-107	2001
Metabolism	Regulation of nod factor sulphation genes in Rhizobium tropici CIAT899.	Manyani H, Sousa C, Soria Diaz ME, Gil-Serrano A, Megias M	Can J Microbiol	10.1139/w01-032	2001
Metabolism	Identification of a system that allows a Rhizobium tropici dctA mutant to grow on succinate, but not on other C4-dicarboxylates.	Batista S, Catalan AI, Hernandez-Lucas I, Martinez-Romero E, Aguilar OM, Martinez-Drets G	Can J Microbiol	10.1139/w01-041	2001
Enzymology	Periplasmic PQQ-dependent glucose oxidation in free-living and symbiotic rhizobia.	Bernardelli CE, Luna MF, Galar ML, Boiardi JL	Curr Microbiol	10.1007/s002840010222	2001
Stress	A guaB mutant strain of Rhizobium tropici CIAT899 pleiotropically defective in thermal tolerance and symbiosis.	Riccillo PM, Collavino MM, Grasso DH, England R, de Bruijn FJ, Aguilar OM	Mol Plant Microbe Interact	10.1094/MPMI.2000.13.11.1228	2000
Metabolism	Glutathione is involved in environmental stress responses in Rhizobium tropici, including acid tolerance.	Riccillo PM, Muglia CI, de Bruijn FJ, Roe AJ, Booth IR, Aguilar OM	J Bacteriol	10.1128/JB.182.6.1748-1753.2000	2000
Metabolism	Mutants of Rhizobium tropici strain CIAT899 that do not induce chlorosis in plants.	O'Connell KP, Raffel SJ, Saville BJ, Handelsman J	Microbiology (Reading)	10.1099/00221287-144-9-2607	1998
Metabolism	Sulfation of nod factors via nodHPQ is nodD independent in Rhizobium tropici CIAT899.	Folch-Mallol JL, Manyani H, Marroqui S, Sousa C, Vargas C, Nava N, Colmenero-Flores JM, Quinto C, Megias M	Mol Plant Microbe Interact	10.1094/MPMI.1998.11.10.979	1998
Genetics	Rhizobium tropici teu genes involved in specific uptake of Phaseolus vulgaris bean-exudate compounds.	Rosenblueth M, Hynes MF, Martinez-Romero E	Mol Gen Genet	10.1007/s004380050772	1998
	A 150-megadalton plasmid in Rhizobium etli strain TAL182 contains genes for nodulation competitiveness on Phaseolus vulgaris L.	Borthakur D, Gao X	Can J Microbiol	10.1139/m96-116	1996
Enzymology	Characterization of Rhizobium tropici CIAT899 nodulation factors: the role of nodH and nodPQ genes in their sulfation.	Folch-Mallol JL, Marroqui S, Sousa C, Manyani H, Lopez-Lara IM, van der Drift KM, Haverkamp J, Quinto C, Gil-Serrano A, Thomas-Oates J, Spaink HP, Megias M	Mol Plant Microbe Interact	10.1094/mpmi-9-0151	1996
Genetics	Structural analysis of the O-antigen of the lipopolysaccharide of Rhizobium tropici CIAT899.	Gil-Serrano AM, Gonzalez-Jimenez I, Tejero Mateo P, Bernabe M, Jimenez-Barbero J, Megias M, Romero-Vazquez MJ	Carbohydr Res	10.1016/0008-6215(95)00178-v	1995
Genetics	The nodS gene of Rhizobium tropici strain CIAT899 is necessary for nodulation on Phaseolus vulgaris and on Leucaena leucocephala.	Waelkens F, Voets T, Vlassak K, Vanderleyden J, van Rhijn P	Mol Plant Microbe Interact	10.1094/mpmi-8-0147	1995
	Analysis of the lipid moiety of lipopolysaccharide from Rhizobium tropici CIAT899: identification of 29-hydroxytriacontanoic acid.	Gil-Serrano AM, Gonzalez-Jimenez I, Tejero-Mateo P, Megias M, Romero-Vazquez MJ	J Bacteriol	10.1128/jb.176.8.2454-2457.1994	1994
Phylogeny	Classification of the uptake hydrogenase-positive (Hup+) bean rhizobia as Rhizobium tropici.	van Berkum P, Navarro RB, Vargas AA	Appl Environ Microbiol	10.1128/aem.60.2.554-561.1994	1994
Enzymology	A Rhizobium tropici DNA region carrying the amino-terminal half of a nodD gene and a nod-box-like sequence confers host-range extension.	Sousa C, Folch JL, Boloix P, Megias M, Nava N, Quinto C	Mol Microbiol	10.1111/j.1365-2958.1993.tb01245.x	1993
Pathogenicity	Foliar Chlorosis in Symbiotic Host and Nonhost Plants Induced by Rhizobium tropici Type B Strains.	O'connell KP, Handelsman J	Appl Environ Microbiol	10.1128/aem.59.7.2184-2189.1993	1993
Enzymology	Multiple copies of nodD in Rhizobium tropici CIAT899 and BR816.	van Rhijn PJ, Feys B, Verreth C, Vanderleyden J	J Bacteriol	10.1128/jb.175.2.438-447.1993	1993
Phenotype	Molecular and symbiotic characterization of exopolysaccharide-deficient mutants of Rhizobium tropici strain CIAT899.	Milner JL, Araujo RS, Handelsman J	Mol Microbiol	10.1111/j.1365-2958.1992.tb01770.x	1992
Phylogeny	Phylogenetic position of Rhizobium sp. strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes.	Eardly BD, Young JP, Selander RK	Appl Environ Microbiol	10.1128/aem.58.6.1809-1815.1992	1992
Metabolism	The Rhizobium tropici CIAT 899 NodD2 protein promotes symbiosis and extends rhizobial nodulation range by constitutive nodulation factor synthesis.	Ayala-Garcia P, Jimenez-Guerrero I, Jacott CN, Lopez-Baena FJ, Ollero FJ, Del Cerro P, Perez-Montano F	J Exp Bot	10.1093/jxb/erac325	2022
Phylogeny	Rhizobium dioscoreae sp. nov., a plant growth-promoting bacterium isolated from yam (Dioscorea species).	Ouyabe M, Tanaka N, Shiwa Y, Fujita N, Kikuno H, Babil P, Shiwachi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004381	2020
Phylogeny	Rhizobium multihospitium sp. nov., isolated from multiple legume species native of Xinjiang, China.	Han TX, Wang ET, Wu LJ, Chen WF, Gu JG, Gu CT, Tian CF, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.65568-0	2008
Phylogeny	Rhizobium lusitanum sp. nov. a bacterium that nodulates Phaseolus vulgaris.	Valverde A, Igual JM, Peix A, Cervantes E, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.64402-0	2006

References

#4356	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11418
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#33110	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123592	Collection of Institut Pasteur ; Curators of the CIP; CIP 107331
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Rhizobium tropici (DSM 11418, ATCC 49672, CIAT 899)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000330885

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media