Name: Rhizobium tropici DSM 11418
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13624

Type strain:

Species: Rhizobium tropici

Culture col. no.: DSM 11418, ATCC 49672, CIAT 899, HAMBI 1163, JCM 21072, IAM 14206, IFO 15247, LMG 9503, NBRC 15247, OUT 30011, CIP 107331, ORS 1163

Strain history: CIP <- 2002, P. De Lajudie, Montpellier, France: strain ORS 1163 <- 1989, LMG <- J. Vanderleyden, Rhizobium phaseoli

NCBI tax ID(s): 698761 (strain), 398 (species)

SI-ID 4808

LMG 9503, ATCC 49672, ATCC 700750, DSM 11418, IFO 15247, IAM 14206, CECT 4654, CCT 4160, HAMBI 1163, NBRC 15247, BCRC 15724, CCRC 15724, ICMP 13646, KACC 10636, JCM 21072, CIP 107331, NCPPB 4144

Section

Rhizobium tropici DSM 11418 is a mesophilic, Gram-negative bacterium that was isolated from root nodule of Phaseolus vulgaris.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium tropici**
	Full Scientific Name (LPSN)	Rhizobium tropici Martínez-Romero et al. 1991

Information on morphological and physiological properties Morphology

[Ref.: #123592]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.959

[Ref.: #123592]	Cell shape	rod-shaped

[Ref.: #123592]	Motility	no

[Ref.: #4356]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4356]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #4356]

Culture medium growth

[Ref.: #4356]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4356]

Culture medium composition

expand / minimize

[Ref.: #33110]

Culture medium

MEDIUM 296 - for Rhizobium

[Ref.: #33110]

Culture medium growth

[Ref.: #33110]

Culture medium composition

expand / minimize

[Ref.: #123592]

Culture medium

CIP Medium 296

[Ref.: #123592]

Culture medium growth

[Ref.: #123592]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4356]		growth	30 °C
[Ref.: #33110]		growth	30 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #123592]		growth	25-37 °C
[Ref.: #123592]	no	growth	10 °C
[Ref.: #123592]	no	growth	41 °C
[Ref.: #123592]	no	growth	45 °C

[Ref.: #4356]	Temperature range	mesophilic
[Ref.: #33110]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #123592]	Temperature range	mesophilic
[Ref.: #123592]	Temperature range	psychrophilic
[Ref.: #123592]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.973

	Salt	Tested relation		Salt conc.
[Ref.: #123592]	NaCl		growth	0-4	%
[Ref.: #123592]	NaCl	no	growth	6	%
[Ref.: #123592]	NaCl	no	growth	8	%
[Ref.: #123592]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123592]	citrate ChEBI	+	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123592]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123592]	hippurate ChEBI	+	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123592]	nitrate ChEBI	-	reduction
[Ref.: #123592]	nitrate ChEBI	-	respiration
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #123592]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123592]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #123592]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #123592]	acetoin ChEBI	+
[Ref.: #123592]	glucose ChEBI		-
[Ref.: #68369]	indole ChEBI			-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123592]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123592]	amylase	-
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #123592]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123592]	caseinase	-	3.4.21.50
[Ref.: #4356]	catalase	+	1.11.1.6
[Ref.: #123592]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #4356]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #123592]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #123592]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #123592]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #123592]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123592]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123592]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123592]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123592]	oxidase	+
[Ref.: #123592]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #123592]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123592]	tryptophan deaminase	-
[Ref.: #123592]	tween esterase	-
[Ref.: #123592]	urease	+	3.5.1.5
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #4356]	23688	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+/-	-	-	+	+	-	not determinedn.d.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123592]	10938	not determinedn.d.	-	-	-	+/-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123592]	2158	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	-	-	+	+	+	+	+	+	+	-	+	+	-	-	+	-	-	-	-	+	+	+	+	-	+	-	-	+	-	-	+	+	-	+	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123592]	10269	-	+	+	-	-	+	+	-	+	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4356]	Sample type/isolated from	root nodule of Phaseolus vulgaris
[Ref.: #4356]	Host species	Phaseolus vulgaris
[Ref.: #4356]	Geographic location (country and/or sea, region)	South America

[Ref.: #67770]	Sample type/isolated from	Phaseolus vulgaris
[Ref.: #67770]	Host species	Phaseolus vulgaris
[Ref.: #67770]	Country	Colombia
[Ref.: #67770]	Country ISO 3 Code	COL
[Ref.: #67770]	Continent	Middle and South America

[Ref.: #123592]	Sample type/isolated from	Phaseolus vulgaris L.
[Ref.: #123592]	Geographic location (country and/or sea, region)	Columbia, Missouri
[Ref.: #123592]	Country	United States of America
[Ref.: #123592]	Country ISO 3 Code	USA
[Ref.: #123592]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U89832 (>99% sequence identity) for Rhizobiaceae from Microbeatlas

Aquatic Samples	403
Soil Samples	3171
Animal Samples	1252
Plant Samples	1013
Total Samples	5839

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4356]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123592]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhizobium tropici gene for 16S rRNA, strain: IAM 14206	D12798	1434	ENA	398 tax ID
[Ref.: #4356]	Rhizobium tropici gene for 16S rRNA, partial sequence, strain: NBRC 15247	AB680818	1406	ENA	398 tax ID
[Ref.: #20218]	Rhizobium tropici CIAT 899 16S ribosomal RNA gene, partial sequence	HQ850704	1471	ENA	698761 tax ID	*
[Ref.: #20218]	Rhizobium tropici strain CIAT 899 16S-23S intergenic spacer, partial sequence	AF271645	1072	ENA	698761 tax ID	*
[Ref.: #20218]	Rhizobium tropici CIAT 899 16S ribosomal RNA gene, partial sequence	EU488752	1422	ENA	698761 tax ID	*
[Ref.: #20218]	Rhizobium tropici 16S ribosomal RNA gene, partial sequence	U89832	1474	ENA	698761 tax ID	*
[Ref.: #20218]	Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	AY491966	1157	ENA	698761 tax ID	*
[Ref.: #20218]	Rhizobium leguminosarum 16S ribosomal RNA, partial	M55233	260	ENA	385 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium tropici CIAT 899	GCA_000330885	complete	GenBank	698761 tax ID	*
[Ref.: #66792]	Rhizobium tropici CIAT 899	698761.32	plasmid	PATRIC	698761 tax ID	*
[Ref.: #66792]	Rhizobium tropici CIAT 899	698761.4	complete	PATRIC	698761 tax ID	*
[Ref.: #66792]	Rhizobium tropici CIAT 899	698761.31	plasmid	PATRIC	698761 tax ID	*
[Ref.: #66792]	Rhizobium tropici CIAT 899	698761.30	plasmid	PATRIC	698761 tax ID	*
[Ref.: #66792]	Rhizobium tropici CIAT899	2524023199	complete	JGI IMG/M	698761 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhizobium tropici CIAT 899 CIAT 899 NCBI: GCA_000330885.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhizobium tropici CIAT 899 CIAT 899 NCBI: GCA_000330885.1
[Ref.: #69480]	motile	yes	84.313	no
[Ref.: #69480]	flagellated	no	79.166	no
[Ref.: #69480]	gram-positive	no	97.68	no
[Ref.: #69480]	anaerobic	no	98.183	no
[Ref.: #69480]	aerobic	yes	90.318	no
[Ref.: #69480]	halophile	no	93.086	no
[Ref.: #69480]	spore-forming	no	93.582	no
[Ref.: #69480]	thermophile	no	99.583	no
[Ref.: #69480]	glucose-util	yes	91.054	no
[Ref.: #69480]	glucose-ferment	no	87.302	no

Availability in culture collections External links

[Ref.: #4356]

Culture collection no.

DSM 11418, ATCC 49672, CIAT 899, HAMBI 1163, JCM 21072, IAM 14206, IFO 15247, LMG 9503, NBRC 15247, OUT 30011, CIP 107331, ORS 1163

[Ref.: #82810]

SI-ID 4808

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Priming of defense-related genes in Brassica oleracea var. capitata using concentrated metabolites produced by Rhizobium tropici CIAT 899.	Santos IR, Ribeiro DG, Tavora FTPK, Maximiano MR, Rabelo AC, Rios TB, Reis Junior FB, Megias M, Silva LP, Mehta A	Braz J Microbiol	10.1007/s42770-022-00722-4	2022	*
Phylogeny	Isolation and Characterization of High-Efficiency Rhizobia From Western Kenya Nodulating With Common Bean.	Wekesa CS, Furch ACU, Oelmuller R	Front Microbiol	10.3389/fmicb.2021.697567	2021	*
Phylogeny	Rhizobium dioscoreae sp. nov., a plant growth-promoting bacterium isolated from yam (Dioscorea species).	Ouyabe M, Tanaka N, Shiwa Y, Fujita N, Kikuno H, Babil P, Shiwachi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004381	2020	*
Metabolism	OnfD, an AraC-Type Transcriptional Regulator Encoded by Rhizobium tropici CIAT 899 and Involved in Nod Factor Synthesis and Symbiosis.	Del Cerro P, Ayala-Garcia P, Buzon P, Castells-Graells R, Lopez-Baena FJ, Ollero FJ, Perez-Montano F	Appl Environ Microbiol	10.1128/AEM.01297-20	2020	*
Metabolism	Hydrogen-uptake genes improve symbiotic efficiency in common beans (Phaseolus vulgaris L.).	Torres AR, Brito B, Imperial J, Palacios JM, Ciampitti IA, Ruiz-Argueso T, Hungria M	Antonie Van Leeuwenhoek	10.1007/s10482-019-01381-6	2020	*
Phylogeny	Genetic Interaction Studies Reveal Superior Performance of Rhizobium tropici CIAT899 on a Range of Diverse East African Common Bean (Phaseolus vulgaris L.) Genotypes.	Gunnabo AH, Geurts R, Wolde-Meskel E, Degefu T, Giller KE, van Heerwaarden J	Appl Environ Microbiol	10.1128/AEM.01763-19	2019	*
Metabolism	Rhizobium tropici CIAT 899 copA gene plays a fundamental role in copper tolerance in both free life and symbiosis with Phaseolus vulgaris.	Elizalde-Diaz JP, Hernandez-Lucas I, Medina-Aparicio L, Davalos A, Leija A, Alvarado-Affantranger X, Garcia-Garcia JD, Hernandez G, Garcia-de Los Santos A	Microbiology (Reading)	10.1099/mic.0.000803	2019	*
Metabolism	Osmotic stress activates nif and fix genes and induces the Rhizobium tropici CIAT 899 Nod factor production via NodD2 by up-regulation of the nodA2 operon and the nodA3 gene.	Del Cerro P, Megias M, Lopez-Baena FJ, Gil-Serrano A, Perez-Montano F, Ollero FJ	PLoS One	10.1371/journal.pone.0213298	2019	*
Metabolism	ACC deaminase plays a major role in Pseudomonas fluorescens YsS6 ability to promote the nodulation of Alpha- and Betaproteobacteria rhizobial strains.	Nascimento FX, Tavares MJ, Franck J, Ali S, Glick BR, Rossi MJ	Arch Microbiol	10.1007/s00203-019-01649-5	2019	*
Metabolism	Revealing the roles of y4wF and tidC genes in Rhizobium tropici CIAT 899: biosynthesis of indolic compounds and impact on symbiotic properties.	Tullio LD, Nakatani AS, Gomes DF, Ollero FJ, Megias M, Hungria M	Arch Microbiol	10.1007/s00203-018-1607-y	2018	*
Pathogenicity	[Responses of the common bean (Phaseolus vulgaris L.) and Rhizobium tropici CIAT899 symbiosystem to induced allelopathy by Ipomoea purpurea L. Roth].	Perez-Peralta PJ, Ferrera-Cerrato R, Alarcon A, Trejo-Tellez LI, Cruz-Ortega R, Silva-Rojas HV	Rev Argent Microbiol	10.1016/j.ram.2018.01.006	2018	*
Stress	Dissecting the Acid Stress Response of Rhizobium tropici CIAT 899.	Guerrero-Castro J, Lozano L, Sohlenkamp C	Front Microbiol	10.3389/fmicb.2018.00846	2018	*
Phylogeny	Genetic diversity and symbiotic effectiveness of Phaseolus vulgaris-nodulating rhizobia in Kenya.	Mwenda GM, O'Hara GW, De Meyer SE, Howieson JG, Terpolilli JJ	Syst Appl Microbiol	10.1016/j.syapm.2018.02.001	2018	*
Stress	Co-inoculation of maize with Azospirillum brasilense and Rhizobium tropici as a strategy to mitigate salinity stress.	Fukami J, de la Osa C, Ollero FJ, Megias M, Hungria M	Funct Plant Biol	10.1071/FP17167	2018	*
Metabolism	The expression of an exogenous ACC deaminase by the endophyte Serratia grimesii BXF1 promotes the early nodulation and growth of common bean.	Tavares MJ, Nascimento FX, Glick BR, Rossi MJ	Lett Appl Microbiol	10.1111/lam.12847	2018	*
Metabolism	The Rhizobium tropici CIAT 899 NodD2 protein regulates the production of Nod factors under salt stress in a flavonoid-independent manner.	Del Cerro P, Perez-Montano F, Gil-Serrano A, Lopez-Baena FJ, Megias M, Hungria M, Ollero FJ	Sci Rep	10.1038/srep46712	2017	*
Biotechnology	Impact of rhizobial inoculation and reduced N supply on biomass production and biological N2 fixation in common bean grown hydroponically.	Kontopoulou CK, Liasis E, Iannetta PP, Tampakaki A, Savvas D	J Sci Food Agric	10.1002/jsfa.8202	2017	*
Metabolism	Indole-3-acetic acid production via the indole-3-pyruvate pathway by plant growth promoter Rhizobium tropici CIAT 899 is strongly inhibited by ammonium.	Imada EL, Rolla Dos Santos AAP, Oliveira ALM, Hungria M, Rodrigues EP	Res Microbiol	10.1016/j.resmic.2016.10.010	2016	*
Phylogeny	Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.	Cardoso AA, Andraus MP, Borba TC, Martin-Didonet CC, Ferreira EP	Braz J Microbiol	10.1016/j.bjm.2016.09.002	2016	*
Stress	Genome of Rhizobium leucaenae strains CFN 299(T) and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions.	Ormeno-Orrillo E, Gomes DF, Del Cerro P, Vasconcelos AT, Canchaya C, Almeida LG, Mercante FM, Ollero FJ, Megias M, Hungria M	BMC Genomics	10.1186/s12864-016-2859-z	2016	*
Transcriptome	RNA-seq analysis of the Rhizobium tropici CIAT 899 transcriptome shows similarities in the activation patterns of symbiotic genes in the presence of apigenin and salt.	Perez-Montano F, Del Cerro P, Jimenez-Guerrero I, Lopez-Baena FJ, Cubo MT, Hungria M, Megias M, Ollero FJ	BMC Genomics	10.1186/s12864-016-2543-3	2016	*
Metabolism	Opening the "black box" of nodD3, nodD4 and nodD5 genes of Rhizobium tropici strain CIAT 899.	del Cerro P, Rolla-Santos AA, Gomes DF, Marks BB, del Rosario Espuny M, Rodriguez-Carvajal MA, Soria-Diaz ME, Nakatani AS, Hungria M, Ollero FJ, Megias M	BMC Genomics	10.1186/s12864-015-2033-z	2015	*
Pathogenicity	Regulatory nodD1 and nodD2 genes of Rhizobium tropici strain CIAT 899 and their roles in the early stages of molecular signaling and host-legume nodulation.	del Cerro P, Rolla-Santos AA, Gomes DF, Marks BB, Perez-Montano F, Rodriguez-Carvajal MA, Nakatani AS, Gil-Serrano A, Megias M, Ollero FJ, Hungria M	BMC Genomics	10.1186/s12864-015-1458-8	2015	*
Metabolism	The nodule conductance to O(2) diffusion increases with phytase activity in N(2)-fixing Phaseolus vulgaris L.	Lazali M, Drevon JJ	Plant Physiol Biochem	10.1016/j.plaphy.2014.03.023	2014	*
Metabolism	Localization of the Bacillus subtilis beta-propeller phytase transcripts in nodulated roots of Phaseolus vulgaris supplied with phytate.	Maougal RT, Bargaz A, Sahel C, Amenc L, Djekoun A, Plassard C, Drevon JJ	Planta	10.1007/s00425-013-2023-9	2014	*
Metabolism	Discrimination against 15N among recombinant inbred lines of Phaseolus vulgaris L. contrasting in phosphorus use efficiency for nitrogen fixation.	Lazali M, Bargaz A, Carlsson G, Ounane SM, Drevon JJ	J Plant Physiol	10.1016/j.jplph.2013.07.009	2013	*
Enzymology	Effect of leguminous lectins on the growth of Rhizobium tropici CIAT899.	de Vasconcelos MA, Cunha CO, Arruda FV, Carneiro VA, Bastos RM, Mercante FM, do Nascimento KS, Cavada BS, dos Santos RP, Teixeira EH	Molecules	10.3390/molecules18055792	2013	*
Metabolism	A phytase gene is overexpressed in root nodules cortex of Phaseolus vulgaris-rhizobia symbiosis under phosphorus deficiency.	Lazali M, Zaman-Allah M, Amenc L, Ounane G, Abadie J, Drevon JJ	Planta	10.1007/s00425-013-1893-1	2013	*
Pathogenicity	Fast induction of biosynthetic polysaccharide genes lpxA, lpxE, and rkpI of Rhizobium sp. strain PRF 81 by common bean seed exudates is indicative of a key role in symbiosis.	Oliveira LR, Rodrigues EP, Marcelino-Guimaraes FC, Oliveira AL, Hungria M	Funct Integr Genomics	10.1007/s10142-013-0322-7	2013	*
Metabolism	Differential expression of trehalose 6-P phosphatase and ascorbate peroxidase transcripts in nodule cortex of Phaseolus vulgaris and regulation of nodule O2 permeability.	Bargaz A, Lazali M, Amenc L, Abadie J, Ghoulam C, Farissi M, Faghire M, Drevon JJ	Planta	10.1007/s00425-013-1877-1	2013	*
Genetics	Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.).	Ormeno-Orrillo E, Menna P, Almeida LG, Ollero FJ, Nicolas MF, Pains Rodrigues E, Shigueyoshi Nakatani A, Silva Batista JS, Oliveira Chueire LM, Souza RC, Ribeiro Vasconcelos AT, Megias M, Hungria M, Martinez-Romero E	BMC Genomics	10.1186/1471-2164-13-735	2012	*
Pathogenicity	High NaCl concentrations induce the nod genes of Rhizobium tropici CIAT899 in the absence of flavonoid inducers.	Guasch-Vidal B, Estevez J, Dardanelli MS, Soria-Diaz ME, de Cordoba FF, Balog CI, Manyani H, Gil-Serrano A, Thomas-Oates J, Hensbergen PJ, Deelder AM, Megias M, van Brussel AA	Mol Plant Microbe Interact	10.1094/MPMI-09-12-0213-R	2013	*
Phylogeny	Production of extracellular biopolymers and identification of intracellular proteins and Rhizobium tropici.	Oliveira J, Figueiredo M, Silva M, Malta M, Vendruscolo C, Almeida H	Curr Microbiol	10.1007/s00284-012-0211-7	2012	*
Enzymology	A phosphoenol pyruvate phosphatase transcript is induced in the root nodule cortex of Phaseolus vulgaris under conditions of phosphorus deficiency.	Bargaz A, Ghoulam C, Amenc L, Lazali M, Faghire M, Abadie J, Drevon JJ	J Exp Bot	10.1093/jxb/ers151	2012	*
Metabolism	Is genotypic variation of H(+) efflux under P deficiency linked with nodulated-root respiration of N(2) fixing common-bean (Phaseolus vulgaris L.)?	Alkama N, Ounane G, Drevon JJ	J Plant Physiol	10.1016/j.jplph.2012.03.013	2012	*
Phylogeny	[Phenotypic and genotypic characterization of twelve rhizobial isolates from different regions of Venezuela].	Eugenia Marquina M, Enrique Gonzalez N, Castro Y	Rev Biol Trop		2011	*
Metabolism	Hydroxylated ornithine lipids increase stress tolerance in Rhizobium tropici CIAT899.	Vences-Guzman MA, Guan Z, Ormeno-Orrillo E, Gonzalez-Silva N, Lopez-Lara IM, Martinez-Romero E, Geiger O, Sohlenkamp C	Mol Microbiol	10.1111/j.1365-2958.2011.07535.x	2011	*
Phylogeny	Biosynthesis of compatible solutes in rhizobial strains isolated from Phaseolus vulgaris nodules in Tunisian fields.	Fernandez-Aunion C, Hamouda TB, Iglesias-Guerra F, Argandona M, Reina-Bueno M, Nieto JJ, Aouani ME, Vargas C	BMC Microbiol	10.1186/1471-2180-10-192	2010	*
Enzymology	Experimental evidences of pSym transfer in a native peanut-associated rhizobia.	Ibanez F, Reinoso H, Fabra A	Microbiol Res	10.1016/j.micres.2009.08.004	2009	*
Metabolism	Global changes in the transcript and metabolic profiles during symbiotic nitrogen fixation in phosphorus-stressed common bean plants.	Hernandez G, Valdes-Lopez O, Ramirez M, Goffard N, Weiller G, Aparicio-Fabre R, Fuentes SI, Erban A, Kopka J, Udvardi MK, Vance CP	Plant Physiol	10.1104/pp.109.143842	2009	*
Metabolism	An alternative succinate (2-oxoglutarate) transport system in Rhizobium tropici is induced in nodules of Phaseolus vulgaris.	Batista S, Patriarca EJ, Tate R, Martinez-Drets G, Gill PR	J Bacteriol	10.1128/JB.00252-09	2009	*
Metabolism	Different and new Nod factors produced by Rhizobium tropici CIAT899 following Na+ stress.	Estevez J, Soria-Diaz ME, de Cordoba FF, Moron B, Manyani H, Gil A, Thomas-Oates J, van Brussel AA, Dardanelli MS, Sousa C, Megias M	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01540.x	2009	*
Metabolism	Glutathione produced by Rhizobium tropici is important to prevent early senescence in common bean nodules.	Muglia C, Comai G, Spegazzini E, Riccillo PM, Aguilar OM	FEMS Microbiol Lett	10.1111/j.1574-6968.2008.01285.x	2008	*
Phylogeny	Rhizobium multihospitium sp. nov., isolated from multiple legume species native of Xinjiang, China.	Han TX, Wang ET, Wu LJ, Chen WF, Gu JG, Gu CT, Tian CF, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.65568-0	2008	*
Genetics	Mutations in lipopolysaccharide biosynthetic genes impair maize rhizosphere and root colonization of Rhizobium tropici CIAT899.	Ormeno-Orrillo E, Rosenblueth M, Luyten E, Vanderleyden J, Martinez-Romero E	Environ Microbiol	10.1111/j.1462-2920.2007.01541.x	2008	*
Metabolism	The lipid lysyl-phosphatidylglycerol is present in membranes of Rhizobium tropici CIAT899 and confers increased resistance to polymyxin B under acidic growth conditions.	Sohlenkamp C, Galindo-Lagunas KA, Guan Z, Vinuesa P, Robinson S, Thomas-Oates J, Raetz CR, Geiger O	Mol Plant Microbe Interact	10.1094/MPMI-20-11-1421	2007	*
Metabolism	Rhizobium tropici response to acidity involves activation of glutathione synthesis.	Muglia CI, Grasso DH, Aguilar OM	Microbiology (Reading)	10.1099/mic.0.2006/003483-0	2007	*
Phylogeny	Rhizobium lusitanum sp. nov. a bacterium that nodulates Phaseolus vulgaris.	Valverde A, Igual JM, Peix A, Cervantes E, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.64402-0	2006	*
Genetics	Genotypic variation of N2-fixing common bean (Phaseolus vulgaris L.) in response to iron deficiency.	Krouma A, Drevon JJ, Abdelly C	J Plant Physiol	10.1016/j.jplph.2005.08.013	2005	*
Genetics	A ClC chloride channel homolog and ornithine-containing membrane lipids of Rhizobium tropici CIAT899 are involved in symbiotic efficiency and acid tolerance.	Rojas-Jimenez K, Sohlenkamp C, Geiger O, Martinez-Romero E, Werner D, Vinuesa P	Mol Plant Microbe Interact	10.1094/MPMI-18-1175	2005	*
Enzymology	Low pH changes the profile of nodulation factors produced by Rhizobium tropici CIAT899.	Moron B, Soria-Diaz ME, Ault J, Verroios G, Noreen S, Rodriguez-Navarro DN, Gil-Serrano A, Thomas-Oates J, Megias M, Sousa C	Chem Biol	10.1016/j.chembiol.2005.06.014	2005	*
Metabolism	An abundance of nodulation factors.	Kannenberg E, Carlson RW	Chem Biol	10.1016/j.chembiol.2005.09.004	2005	*
Phenotype	GuaB activity is required in Rhizobium tropici during the early stages of nodulation of determinate nodules but is dispensable for the Sinorhizobium meliloti-alfalfa symbiotic interaction.	Collavino M, Riccillo PM, Grasso DH, Crespi M, Aguilar M	Mol Plant Microbe Interact	10.1094/MPMI-18-0742	2005	*
Genetics	Nodule conductance varied among common bean (Phaseolus vulgaris) genotypes under phosphorus deficiency.	Jebara M, Aouani ME, Payre H, Drevon JJ	J Plant Physiol	10.1016/j.jplph.2004.06.015	2005	*
Phylogeny	High salt and high pH tolerance of new isolated Rhizobium etli strains from Egyptian soils.	Shamseldin A, Werner D	Curr Microbiol	10.1007/s00284-004-4391-7	2005	*
Enzymology	Nitrogenase and antioxidant enzyme activities in Phaseolus vulgaris nodules formed by Rhizobium tropici isogenic strains with varying tolerance to salt stress.	Tejera NA, Campos R, Sanjuan J, Lluch C	J Plant Physiol	10.1078/0176-1617-01050	2004	*
Genetics	Genetic analysis of a pH-regulated operon from Rhizobium tropici CIAT899 involved in acid tolerance and nodulation competitiveness.	Vinuesa P, Neumann-Silkow F, Pacios-Bras C, Spaink HP, Martinez-Romero E, Werner D	Mol Plant Microbe Interact	10.1094/MPMI.2003.16.2.159	2003	*
Metabolism	Regulation of nod factor sulphation genes in Rhizobium tropici CIAT899.	Manyani H, Sousa C, Soria Diaz ME, Gil-Serrano A, Megias M	Can J Microbiol	10.1139/w01-032	2001	*
Metabolism	Identification of a system that allows a Rhizobium tropici dctA mutant to grow on succinate, but not on other C4-dicarboxylates.	Batista S, Catalan AI, Hernandez-Lucas I, Martinez-Romero E, Aguilar OM, Martinez-Drets G	Can J Microbiol	10.1139/w01-041	2001	*
Enzymology	Periplasmic PQQ-dependent glucose oxidation in free-living and symbiotic rhizobia.	Bernardelli CE, Luna MF, Galar ML, Boiardi JL	Curr Microbiol	10.1007/s002840010222	2001	*
Stress	A guaB mutant strain of Rhizobium tropici CIAT899 pleiotropically defective in thermal tolerance and symbiosis.	Riccillo PM, Collavino MM, Grasso DH, England R, de Bruijn FJ, Aguilar OM	Mol Plant Microbe Interact	10.1094/MPMI.2000.13.11.1228	2000	*
Metabolism	Glutathione is involved in environmental stress responses in Rhizobium tropici, including acid tolerance.	Riccillo PM, Muglia CI, de Bruijn FJ, Roe AJ, Booth IR, Aguilar OM	J Bacteriol	10.1128/JB.182.6.1748-1753.2000	2000	*
Metabolism	Mutants of Rhizobium tropici strain CIAT899 that do not induce chlorosis in plants.	O'Connell KP, Raffel SJ, Saville BJ, Handelsman J	Microbiology (Reading)	10.1099/00221287-144-9-2607	1998	*
Metabolism	Sulfation of nod factors via nodHPQ is nodD independent in Rhizobium tropici CIAT899.	Folch-Mallol JL, Manyani H, Marroqui S, Sousa C, Vargas C, Nava N, Colmenero-Flores JM, Quinto C, Megias M	Mol Plant Microbe Interact	10.1094/MPMI.1998.11.10.979	1998	*
Genetics	Rhizobium tropici teu genes involved in specific uptake of Phaseolus vulgaris bean-exudate compounds.	Rosenblueth M, Hynes MF, Martinez-Romero E	Mol Gen Genet	10.1007/s004380050772	1998	*
Enzymology	Characterization of Rhizobium tropici CIAT899 nodulation factors: the role of nodH and nodPQ genes in their sulfation.	Folch-Mallol JL, Marroqui S, Sousa C, Manyani H, Lopez-Lara IM, van der Drift KM, Haverkamp J, Quinto C, Gil-Serrano A, Thomas-Oates J, Spaink HP, Megias M	Mol Plant Microbe Interact	10.1094/mpmi-9-0151	1996	*
Genetics	Structural analysis of the O-antigen of the lipopolysaccharide of Rhizobium tropici CIAT899.	Gil-Serrano AM, Gonzalez-Jimenez I, Tejero Mateo P, Bernabe M, Jimenez-Barbero J, Megias M, Romero-Vazquez MJ	Carbohydr Res	10.1016/0008-6215(95)00178-v	1995	*
Genetics	The nodS gene of Rhizobium tropici strain CIAT899 is necessary for nodulation on Phaseolus vulgaris and on Leucaena leucocephala.	Waelkens F, Voets T, Vlassak K, Vanderleyden J, van Rhijn P	Mol Plant Microbe Interact	10.1094/mpmi-8-0147	1995	*
Phylogeny	Classification of the uptake hydrogenase-positive (Hup+) bean rhizobia as Rhizobium tropici.	van Berkum P, Navarro RB, Vargas AA	Appl Environ Microbiol	10.1128/aem.60.2.554-561.1994	1994	*
Enzymology	A Rhizobium tropici DNA region carrying the amino-terminal half of a nodD gene and a nod-box-like sequence confers host-range extension.	Sousa C, Folch JL, Boloix P, Megias M, Nava N, Quinto C	Mol Microbiol	10.1111/j.1365-2958.1993.tb01245.x	1993	*
Pathogenicity	Foliar Chlorosis in Symbiotic Host and Nonhost Plants Induced by Rhizobium tropici Type B Strains.	O'connell KP, Handelsman J	Appl Environ Microbiol	10.1128/aem.59.7.2184-2189.1993	1993	*
Enzymology	Multiple copies of nodD in Rhizobium tropici CIAT899 and BR816.	van Rhijn PJ, Feys B, Verreth C, Vanderleyden J	J Bacteriol	10.1128/jb.175.2.438-447.1993	1993	*
Phenotype	Molecular and symbiotic characterization of exopolysaccharide-deficient mutants of Rhizobium tropici strain CIAT899.	Milner JL, Araujo RS, Handelsman J	Mol Microbiol	10.1111/j.1365-2958.1992.tb01770.x	1992	*
Phylogeny	Phylogenetic position of Rhizobium sp. strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes.	Eardly BD, Young JP, Selander RK	Appl Environ Microbiol	10.1128/aem.58.6.1809-1815.1992	1992	*
Metabolism	The Rhizobium tropici CIAT 899 NodD2 protein promotes symbiosis and extends rhizobial nodulation range by constitutive nodulation factor synthesis.	Ayala-Garcia P, Jimenez-Guerrero I, Jacott CN, Lopez-Baena FJ, Ollero FJ, Del Cerro P, Perez-Montano F	J Exp Bot	10.1093/jxb/erac325	2022	*
	The nodD1 Gene of Sinorhizobium fredii HH103 Restores Nodulation Capacity on Bean in a Rhizobium tropici CIAT 899 nodD1/nodD2 Mutant, but the Secondary Symbiotic Regulators nolR, nodD2 or syrM Prevent HH103 to Nodulate with This Legume.	Fuentes-Romero F, Navarro-Gomez P, Ayala-Garcia P, Moyano-Bravo I, Lopez-Baena FJ, Perez-Montano F, Ollero-Marquez FJ, Acosta-Jurado S, Vinardell JM	Microorganisms	10.3390/microorganisms10010139	2022	*
	A bioinspired approach to engineer seed microenvironment to boost germination and mitigate soil salinity.	Zvinavashe AT, Lim E, Sun H, Marelli B	Proc Natl Acad Sci U S A	10.1073/pnas.1915902116	2019	*
	Regulation of hsnT, nodF and nodE genes in Rhizobium tropici CIAT 899 and their roles in the synthesis of Nod factors and in the symbiosis.	Gomes DF, Tullio LD, Del Cerro P, Nakatani AS, Rolla-Santos AAP, Gil-Serrano A, Megias M, Ollero FJ, Hungria M	Microbiology (Reading)	10.1099/mic.0.000824	2019	*
	Exo-Metabolites of Phaseolus vulgaris-Nodulating Rhizobial Strains.	Montes-Grajales D, Esturau-Escofet N, Esquivel B, Martinez-Romero E	Metabolites	10.3390/metabo9060105	2019	*
	Response of common bean (Phaseolus vulgaris L.) to nitrogen, phosphorus and rhizobia inoculation across variable soils in Zimbabwe.	Chekanai V, Chikowo R, Vanlauwe B	Agric Ecosyst Environ	10.1016/j.agee.2018.08.010	2018	*
	Transcriptomic Studies of the Effect of nod Gene-Inducing Molecules in Rhizobia: Different Weapons, One Purpose.	Jimenez-Guerrero I, Acosta-Jurado S, Del Cerro P, Navarro-Gomez P, Lopez-Baena FJ, Ollero FJ, Vinardell JM, Perez-Montano F	Genes (Basel)	10.3390/genes9010001	2017	*
	NrcR, a New Transcriptional Regulator of Rhizobium tropici CIAT 899 Involved in the Legume Root-Nodule Symbiosis.	Del Cerro P, Rolla-Santos AA, Valderrama-Fernandez R, Gil-Serrano A, Bellogin RA, Gomes DF, Perez-Montano F, Megias M, Hungria M, Ollero FJ	PLoS One	10.1371/journal.pone.0154029	2016	*
	Maize growth promotion by inoculation with Azospirillum brasilense and metabolites of Rhizobium tropici enriched on lipo-chitooligosaccharides (LCOs).	Marks BB, Megias M, Ollero FJ, Nogueira MA, Araujo RS, Hungria M	AMB Express	10.1186/s13568-015-0154-z	2015	*
	Site-specific distribution and competitive ability of indigenous bean-nodulating rhizobia isolated from organic fields in Minnesota.	Wongphatcharachai M, Wang P, Staley C, Chun CL, Ferguson JA, Moncada KM, Sheaffer CC, Sadowsky MJ	J Biotechnol	10.1016/j.jbiotec.2015.09.009	2015	*
	Biotechnological potential of rhizobial metabolites to enhance the performance of Bradyrhizobium spp. and Azospirillum brasilense inoculants with soybean and maize.	Marks BB, Megias M, Nogueira MA, Hungria M	AMB Express	10.1186/2191-0855-3-21	2013	*
	Combined inoculation with Glomus intraradices and Rhizobium tropici CIAT899 increases phosphorus use efficiency for symbiotic nitrogen fixation in common bean (Phaseolus vulgaris L.).	Tajini F, Trabelsi M, Drevon JJ	Saudi J Biol Sci	10.1016/j.sjbs.2011.11.003	2011	*
	Co-inoculation with Bacillus sp. CECT 450 improves nodulation in Phaseolus vulgaris L.	Camacho M, Santamaria C, Temprano F, Rodriguez-Navarro DN, Daza A	Can J Microbiol	10.1139/w01-107	2001	*
	A 150-megadalton plasmid in Rhizobium etli strain TAL182 contains genes for nodulation competitiveness on Phaseolus vulgaris L.	Borthakur D, Gao X	Can J Microbiol	10.1139/m96-116	1996	*
	Analysis of the lipid moiety of lipopolysaccharide from Rhizobium tropici CIAT899: identification of 29-hydroxytriacontanoic acid.	Gil-Serrano AM, Gonzalez-Jimenez I, Tejero-Mateo P, Megias M, Romero-Vazquez MJ	J Bacteriol	10.1128/jb.176.8.2454-2457.1994	1994	*

References

#4356

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11418

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33110 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82810

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4808.1 )

#123592 Collection of Institut Pasteur ; Curators of the CIP; CIP 107331
* These data were automatically processed and therefore are not curated

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