Name: Rhizobium aggregatum 161A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13623

Type strain:

Species: Rhizobium aggregatum

Strain Designation: 161A

Culture col. no.: DSM 1111, ATCC 43293, IFAM 1003

Strain history: <- P. Hirsch, IFAM <- M. Müller

NCBI tax ID(s): 34013 (species)

SI-ID 379771

ATCC 43293, DSM 1111, NCIMB 12290, VKM B-2061, LMG 23059

Section

Rhizobium aggregatum 161A is a mesophilic bacterium that was isolated from surface lake water.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium aggregatum**
	Full Scientific Name (LPSN)	Rhizobium aggregatum (Hirsch and Müller 1986) Kaur et al. 2011

	Synonym	Peteryoungia aggregata
	Synonym	Blastobacter aggregatus

Information on morphological and physiological properties Morphology

[Ref.: #560]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #560]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #560]

Culture medium growth

[Ref.: #560]

Culture medium link

Medium recipe at MediaDive

[Ref.: #560]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #560]			growth	25 °C

[Ref.: #560]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #560]	23562	-	-	-	-	+	+	-	+	+	+	+	+	+	+	-	-	-	-	-	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #560]	Sample type/isolated from	surface lake water
[Ref.: #560]	Geographic location (country and/or sea, region)	Schleswig-Holstein, Höftsee
[Ref.: #560]	Country	Germany
[Ref.: #560]	Country ISO 3 Code	DEU
[Ref.: #560]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X73041 (>99% sequence identity) for Rhizobium aggregatum from Microbeatlas

Aquatic Samples	94
Soil Samples	61
Animal Samples	60
Plant Samples	20
Total Samples	235

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #560]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #560]	Blastobacter aggregatus 16S rRNA gene, strain IFAM 1003	X73041	1414	ENA	1368425 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium aggregatum DSM 1111	2926661365	draft	JGI IMG/M	1368425 tax ID	*
[Ref.: #66792]	Rhizobium aggregatum DSM 1111	2738541329	draft	JGI IMG/M	1368425 tax ID	*

[Ref.: #560]	GC-content	62.7 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #560]	GC-content	60.4 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #560]

Culture collection no.

DSM 1111, ATCC 43293, IFAM 1003

[Ref.: #82809]

SI-ID 379771

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhizobium rosettiformans sp. nov., isolated from a hexachlorocyclohexane dump site, and reclassification of Blastobacter aggregatus Hirsch and Muller 1986 as Rhizobium aggregatum comb. nov.	Kaur J, Verma M, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.017491-0	2010	*

References

#560	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1111

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#82809

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID379771.1 )

* These data were automatically processed and therefore are not curated

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