Gulosibacter bifidus (CIP 102131, IFO 15777, CCUG 50210)

Name: Gulosibacter bifidus (CIP 102131, IFO 15777, CCUG 50210)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 136047

Type strain

Culture col. no. CIP 102131 IFO 15777 CCUG 50210 IAM 15028 TISTR 1512 2 more

NCBI tax ID(s) 272239

Special Collections CCUG JCM CIP

Links

Gulosibacter bifidus CIP 102131 is an aerobe, mesophilic prokaryote of the family Microbacteriaceae.

aerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 62329

CIP 102131,IFO 15777,NBRC 15777,CCUG 50210,IAM 15028,TISTR 1512,JCM 21491

@ref 20215

Last LPSN update 2025-12-16 10:02:28

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Gulosibacter

Species Gulosibacter bifidus

Full scientific name Gulosibacter bifidus (Lin et al. 2004) Nouioui et al. 2018

Synonyms (2)

Zimmermannella bifida
"Pseudoclavibacter bifida"

BacDive ID	Other strains from **Gulosibacter bifidus** (2)	Type strain
7478	G. bifidus S7-7, CCUG 50209, DSM 17450, IAM 14848, TISTR ... (type strain)
153569	G. bifidus CCUG 50211, IFO 15614, IAM 15029, TISTR 1513, ...

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
35347	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
35347	CIP Medium 3			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
35347	positive	growth	30	mesophilic
58788	positive	growth	28-42
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

58788

Oxygen toleranceaerobe

Observation

67770

Observationquinones: MK-8, MK-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	+	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68379	catalase	+	1.11.1.6	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

58788

Fatty acid	Percentage	ECL
C15:0 ANTEISO	39.5	14.711
C17:0 anteiso	15	16.722
C16:0 iso	13.2	15.626
C16:0	11.4	16
C18:2 ω6,9c/C18:0 ANTE	5.9	17.724
C18:1 ω9c	3.8	17.769
C15:0 ISO	3.1	14.621
C18:0	3	18
C14:0 ISO	1.8	13.618
C14:0	1.5	14
C17:0 iso	0.6	16.629
C13:0 ANTEISO	0.5	12.701
C16:1 ω7c	0.4	15.819
C16:0 anteiso	0.3	15.717

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
58788	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
58788	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Fluids	#Blood

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
35347			Paris	France	FRA	Europe
58788	Human blood	1986	Paris	France	FRA	Europe
67770	Human blood		Paris	France	FRA	Europe
35347	Human, Blood		Paris	France	FRA	Europe	1986

Taxonmaps

69479

Global distribution of 16S sequence AB012592 (>99% sequence identity) for Gulosibacter bifidus subclade from Microbeatlas

Aquatic Samples	379
Soil Samples	119
Animal Samples	5198
Plant Samples	89
Total Samples	5785

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
35347	2	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Zimmermannella bifida gene for 16S rRNA, partial sequence, strain: IFO 15777	AB012592	1485		272239

GC content

@ref	GC-content (mol%)	Method
67770	62	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#35347	Collection of Institut Pasteur ; Curators of the CIP; CIP 102131
#58788	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50210
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gulosibacter bifidus (CIP 102131, IFO 15777, CCUG 50210)

Name and taxonomic classification

Morphology