Halolactibacillus miurensis (DSM 17074, IAM 15247, NBRC 100873)

Name: Halolactibacillus miurensis (DSM 17074, IAM 15247, NBRC 100873)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1358

Type strain

Strain Designation M23-1

Culture col. no. DSM 17074 IAM 15247 NBRC 100873 NRIC 0633 M23-1

NCBI tax ID(s) 306541

Special Collections DSMZ Literature strains

Links

Halolactibacillus miurensis M23-1 is a microaerophile, slightly halophilic, mesophilic prokaryote that was isolated from decaying alga.

Gram-positive motile rod-shaped microaerophile slightly halophilic mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 281448

DSM 17074,IAM 15247,NBRC 100873,BCRC 17545,CCRC 17545,JCM 21699

@ref 20215

Last LPSN update 2025-12-16 09:47:05

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Halolactibacillus

Species Halolactibacillus miurensis

Full scientific name Halolactibacillus miurensis Ishikawa et al. 2005

BacDive ID	Other strains from **Halolactibacillus miurensis** (5)	Type strain
160591	H. miurensis 9G, DSM 100495
163240	H. miurensis JCM 21700, IAM 15248, NBRC 100874, NRIC 0634
163241	H. miurensis JCM 21701, IAM 15249, NBRC 100875, NRIC 0635
163242	H. miurensis JCM 21702, IAM 15250, NBRC 100876, NRIC 0636
163243	H. miurensis JCM 21703, IAM 15251, NBRC 100877, NRIC 0637

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
22995	positive	3.6-4.5 µm	0.6-0.9 µm	rod-shaped		peritrichous

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6741	BOGORIELLA MEDIUM (DSMZ Medium 785)		Medium recipe at MediaDive	Name: BOGORIELLA MEDIUM (DSMZ Medium 785) Composition: NaCl 40.0 g/l Glucose 10.0 g/l Na2CO3 10.0 g/l Yeast extract 5.0 g/l Peptone 5.0 g/l KH2PO4 1.0 g/l MgSO4 x 7 H2O 0.2 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6741	positive	growth	30	mesophilic
22995	positive	growth	5.0-45.0
22995	positive	optimum	37.0-40.0

Culture pH

@ref	Ability	Type	PH	PH range
22995	positive	optimum	9.5	alkaliphile
22995	positive	growth	6.0-10.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
6741	microaerophile
125439	obligate aerobe

Spore formation

22995

Spore formationno

Halophily

@ref	Halophily level
22995	slightly halophilic
22995	halotolerant
22995
22995

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
22995	17057 ChEBI	cellobiose	+	fermentation
22995	17108 ChEBI	D-arabinose	-	fermentation
22995	15824 ChEBI	D-fructose	+	fermentation
22995	12936 ChEBI	D-galactose	+	fermentation
22995	17634 ChEBI	D-glucose	+	fermentation
22995	16899 ChEBI	D-mannitol	+	fermentation
22995	16024 ChEBI	D-mannose	+	fermentation
22995	63150 ChEBI	D-rhamnose	-	fermentation
22995	16988 ChEBI	D-ribose	+	fermentation
22995	17924 ChEBI	D-sorbitol	-	fermentation
22995	16551 ChEBI	D-trehalose	+	fermentation
22995	65327 ChEBI	D-xylose	+	fermentation
22995	16813 ChEBI	galactitol	-	fermentation
22995	17754 ChEBI	glycerol	+	fermentation
22995	15443 ChEBI	inulin	+	fermentation
22995	30849 ChEBI	L-arabinose	+	fermentation
22995	17716 ChEBI	lactose	+	fermentation
22995	17306 ChEBI	maltose	+	fermentation
22995	6731 ChEBI	melezitose	+	fermentation
22995	28053 ChEBI	melibiose	+	fermentation
22995	320061 ChEBI	methyl alpha-D-glucopyranoside	+	fermentation
22995	17268 ChEBI	myo-inositol	-	fermentation
22993	17632 ChEBI	nitrate	-	reduction
22995	16634 ChEBI	raffinose	+	fermentation
22995	15963 ChEBI	ribitol	-	fermentation
22995	17814 ChEBI	salicin	+	fermentation
22995	28017 ChEBI	starch	+	fermentation
22995	17992 ChEBI	sucrose	+	fermentation

Enzymes

@ref	Value	Activity	Ec
22995	catalase	-	1.11.1.6
22995	cytochrome oxidase	-	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	chorismate metabolism	100	9 of 9
66794	metabolism of amino sugars and derivatives	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	palmitate biosynthesis	95.45	21 of 22
66794	pentose phosphate pathway	90.91	10 of 11
66794	starch degradation	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	photosynthesis	85.71	12 of 14
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	NAD metabolism	83.33	15 of 18
66794	Entner Doudoroff pathway	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	flavin biosynthesis	80	12 of 15
66794	d-mannose degradation	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	phenylalanine metabolism	69.23	9 of 13
66794	purine metabolism	67.02	63 of 94
66794	acetoin degradation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	pyrimidine metabolism	66.67	30 of 45
66794	cyanate degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	d-xylose degradation	63.64	7 of 11
66794	isoleucine metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	urea cycle	61.54	8 of 13
66794	oxidative phosphorylation	61.54	56 of 91
66794	methionine metabolism	61.54	16 of 26
66794	cysteine metabolism	61.11	11 of 18
66794	methylglyoxal degradation	60	3 of 5
66794	factor 420 biosynthesis	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	arginine metabolism	58.33	14 of 24
66794	non-pathway related	57.89	22 of 38
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	propanol degradation	57.14	4 of 7
66794	glutamate and glutamine metabolism	57.14	16 of 28
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	tryptophan metabolism	55.26	21 of 38
66794	histidine metabolism	55.17	16 of 29
66794	proline metabolism	54.55	6 of 11
66794	leucine metabolism	53.85	7 of 13
66794	alanine metabolism	51.72	15 of 29
66794	ethanol fermentation	50	1 of 2
66794	citric acid cycle	50	7 of 14
66794	CMP-KDO biosynthesis	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	propionate fermentation	50	5 of 10
66794	sulfopterin metabolism	50	2 of 4
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	ketogluconate metabolism	50	4 of 8
66794	vitamin E metabolism	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	quinate degradation	50	1 of 2
66794	degradation of pentoses	46.43	13 of 28
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	metabolism of disaccharids	45.45	5 of 11
66794	degradation of hexoses	44.44	8 of 18
66794	degradation of sugar acids	44	11 of 25
66794	degradation of sugar alcohols	43.75	7 of 16
66794	lysine metabolism	42.86	18 of 42
66794	mevalonate metabolism	42.86	3 of 7
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	lipid metabolism	41.94	13 of 31
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	myo-inositol biosynthesis	40	4 of 10
66794	glycine metabolism	40	4 of 10
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	cholesterol biosynthesis	36.36	4 of 11
66794	glutathione metabolism	35.71	5 of 14
66794	IAA biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	lipid A biosynthesis	33.33	3 of 9
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	sulfate reduction	30.77	4 of 13
66794	polyamine pathway	30.43	7 of 23
66794	tyrosine metabolism	28.57	4 of 14
66794	ascorbate metabolism	27.27	6 of 22
66794	carotenoid biosynthesis	27.27	6 of 22
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	toluene degradation	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	molybdenum cofactor biosynthesis	22.22	2 of 9
66794	nitrate assimilation	22.22	2 of 9
66794	allantoin degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Algae
#Host	#Plants

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22995	decaying alga	Oura beach,Miura Peninsula,Kanagawa Prefecture	Japan	JPN	Asia	35.1333	139.667 35.1333/139.667
6741	decaying marine alga	Oura beach, Miura Peninsula, Kanagawa Prefecture	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB362698 (>99% sequence identity) for Halolactibacillus from Microbeatlas

Aquatic Samples	442
Soil Samples	196
Animal Samples	525
Plant Samples	30
Total Samples	1193

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6741	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2675903221 annotated assembly for Halolactibacillus miurensis DSM 17074	scaffold	GCA_900116255	306541.5	2675903221	306541	61.84
66792	ASM799030v1 assembly for Halolactibacillus miurensis NBRC 100873	contig	GCA_007990305	306541.6		306541	53.24

Genome browser: GCA_900116255

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Halolactibacillus miurensis gene for 16S rRNA, partial sequence, strain: NRIC 0633	AB362698	1557	306541
20218	Halolactibacillus miurensis gene for 16S rRNA, partial sequence, strain: NBRC 100873	AB681277	1491	306541
6741	Halolactibacillus miurensis gene for 16S rRNA, partial sequence	AB196784	1491	306541

GC content

6741

GC-content (mol%)38.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halolactibacillus miurensis DSM 17074
NCBI: GCA_900116255

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	77.30	no
125439	motility	BacteriaNetⓘ	yes	80.80	no
125439	gram_stain	BacteriaNetⓘ	variable	76.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halolactibacillus miurensis DSM 17074
NCBI: GCA_900116255.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	80.98	yes
125438	anaerobic	anaerobicⓘ	no	83.18	yes
125438	aerobic	aerobicⓘ	no	92.55	yes
125438	spore-forming	spore-formingⓘ	yes	51.09	no
125438	thermophilic	thermophileⓘ	no	90.31	no
125438	flagellated	motile2+ⓘ	yes	86.96	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alkalilactibacillus ikkensis, gen. nov., sp. nov., a novel enzyme-producing bacterium from a cold and alkaline environment in Greenland.	Schmidt M, Prieme A, Johansen A, Stougaard P	Extremophiles	10.1007/s00792-012-0430-7	2012
Phylogeny	Halolactibacillus halophilus gen. nov., sp. nov. and Halolactibacillus miurensis sp. nov., halophilic and alkaliphilic marine lactic acid bacteria constituting a phylogenetic lineage in Bacillus rRNA group 1.	Ishikawa M, Nakajima K, Itamiya Y, Furukawa S, Yamamoto Y, Yamasato K	Int J Syst Evol Microbiol	10.1099/ijs.0.63713-0	2005

References

#6741	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17074
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#22993	Yi-Guang Chen,Yu-Qin Zhang,Zhu-Xiang Liu,Da-Chun Zhuang,Hans-Peter Klenk,Shu-Kun Tang,Xiao-Long Cui,Wen-Jun Li: Halobacillus salsuginis sp. nov., a moderately halophilic bacterium from a subterranean brine. IJSEM 59: 2505 - 2509 2009 ( DOI 10.1099/ijs.0.010801-0 , PubMed 19622644 )
#22995	Morio Ishikawa,Kazuyuki Nakajima,Yuko Itamiya,Sayumi Furukawa,Yasushi Yamamoto,Kazuhide Yamasato: Halolactibacillus halophilus gen. nov., sp. nov. and Halolactibacillus miurensis sp. nov., halophilic and alkaliphilic marine lactic acid bacteria constituting a phylogenetic lineage in Bacillus rRNA group 1. IJSEM 55: 2427 - 2439 2005 ( DOI 10.1099/ijs.0.63713-0 , PubMed 16280507 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halolactibacillus miurensis (DSM 17074, IAM 15247, NBRC 100873)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900116255

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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