[Ref.: #2810] |
Sample type/isolated from |
probably boysenberry (Rubus ursinus var. loganobaccus) |
[Ref.: #2810] |
Host species |
Rubus ursinus var. Loganobaccus |
|
[Ref.: #67770] |
Sample type/isolated from |
Cane gall of Rubus ursinus |
[Ref.: #67770] |
Host species |
Rubus ursinus |
[Ref.: #67770] |
Country |
USA |
[Ref.: #67770] |
Country ISO 3 Code |
USA |
[Ref.: #67770] |
Continent |
North America |
|
[Ref.: #122281] |
Sample type/isolated from |
Black raspberry |
* marker position based on {}
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Isolation sources categories |
#Host |
#Plants |
#Herbaceous plants (Grass,Crops) |
#Host Body-Site |
#Plant |
#Fruit (Seed) |
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Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #20218] |
Rhizobium rubi strain DSM 6772 clone 1 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence |
AF345276 |
1259 |
|
28099 tax ID |
* |
[Ref.: #20218] |
Rhizobium rubi strain DSM 6772 clone 2 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence |
AF345277 |
1248 |
|
28099 tax ID |
* |
[Ref.: #20218] |
Agrobacterium rubi gene for 16S rRNA, strain: IAM 13569 |
D12787 |
1438 |
|
28099 tax ID |
* |
[Ref.: #20218] |
Agrobacterium rubi strain ICMP 11833 16S ribosomal RNA gene, partial sequence |
AY626395 |
1336 |
|
28099 tax ID |
* |
[Ref.: #20218] |
Agrobacterium rubi gene for 16S ribosomal RNA, complete sequence |
D14503 |
1472 |
|
28099 tax ID |
* |
[Ref.: #20218] |
Agrobacterium rubi partial 16S rRNA gene, strain LMG 156 |
X67228 |
1436 |
|
28099 tax ID |
* |
[Ref.: #20218] |
Agrobacterium rubi partial 16S rRNA gene, strain LMG 17935 |
AM181759 |
1426 |
|
28099 tax ID |
* |
[Ref.: #20218] |
Agrobacterium rubi gene for 16S rRNA, partial sequence, strain: NBRC 13261 |
AB680385 |
1410 |
|
28099 tax ID |
* |
|
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Availability in culture collections External links
[Ref.: #2810] |
Culture collection no. |
DSM 6772, ATCC 13335, NCPPB 1854, JCM 20918, CFBP 1317, CIP 104332, HAMBI 1812, IAM 13569, ICMP 6428, ICPB TR3, IFO 13261, LMG 13935, LMG 156, NBRC 13261 |
[Ref.: #82760] |
SI-ID 447
|
* |
|
Literature: |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
Agrobacterium bohemicum sp. nov. isolated from poppy seed wastes in central Bohemia. |
Zahradnik J, Nunvar J, Parizkova H, Kolarova L, Palyzova A, Maresova H, Grulich M, Kyslikova E, Kyslik P |
Syst Appl Microbiol |
10.1016/j.syapm.2018.01.003 |
2018 |
* |
Phylogeny |
Rhizobium skierniewicense sp. nov., isolated from tumours on chrysanthemum and cherry plum. |
Pulawska J, Willems A, Sobiczewski P |
Int J Syst Evol Microbiol |
10.1099/ijs.0.032532-0 |
2011 |
* |
Phylogeny |
Rhizobium pusense sp. nov., isolated from the rhizosphere of chickpea (Cicer arietinum L.). |
Panday D, Schumann P, Das SK |
Int J Syst Evol Microbiol |
10.1099/ijs.0.028407-0 |
2010 |
* |
Genetics |
Agrobacterium rubi(T) DSM 6772 produces a lipophilic polysaccharide capsule whose degree of acetylation is growth modulated. |
De Castro C, Gargiulo V, Lanzetta R, Parrilli M |
Biomacromolecules |
10.1021/bm061081f |
2007 |
* |
|
- References
-
#2810 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 6772
|
-
-
-
#34681 |
; Curators of the CIP;
|
-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
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-
#68369 |
Automatically annotated from API 20NE .
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-
-
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#82760 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID447.1 )
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-
#122281 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 104332
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- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
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