Name: Dolosigranulum pigrum R-91/1468
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 135725

Type strain:

Species: Dolosigranulum pigrum

Strain Designation: R-91/1468, R91/1468

Culture col. no.: CIP 104051, ATCC 51524, IFO 15550, NCFB 2975, LMG 19521, KCTC 15002, CCUG 33392, LMG 15126, NBRC 15550, NCIMB 702975

Strain history: CIP <- 1997, NCFB <- PHLS: strain R91/1468

NCBI tax ID(s): 883103 (strain), 29394 (species)

SI-ID 8240

LMG 15126, ATCC 51524, CCUG 33392, CIP 104051, IFO 15550, LMG 19521, NCFB 2975, NCIMB 702975, NBRC 15550, KCTC 15002

Other strains from Dolosigranulum pigrum

D. pigrum CCUG 31310
D. pigrum CCUG 31311
D. pigrum CCUG 33081 A
D. pigrum
D. pigrum CCUG 35446
D. pigrum CCUG 43300
D. pigrum CCUG 43342
D. pigrum CCUG 46432
D. pigrum CCUG 46892
D. pigrum CCUG 50662
D. pigrum CCUG 50829
D. pigrum CCUG 53977
D. pigrum CCUG 54395
D. pigrum CCUG 54405
D. pigrum CCUG 59012
D. pigrum CCUG 59224
D. pigrum CCUG 60739
D. pigrum CCUG 65991
D. pigrum CCUG 68179
D. pigrum CCUG 70055

Section

Dolosigranulum pigrum R-91/1468 is an anaerobe, mesophilic, Gram-positive bacterium of the family Carnobacteriaceae.

Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Dolosigranulum*
	Species	**Dolosigranulum pigrum**
	Full Scientific Name (LPSN)	Dolosigranulum pigrum Aguirre et al. 1994

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #34923]	Gram stain	positive

[Ref.: #34923]	Cell shape	coccus-shaped

[Ref.: #34923]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #34923]

Culture medium

MEDIUM 74 - for Dolosigranulum pigrum

[Ref.: #34923]

Culture medium growth

[Ref.: #34923]

Culture medium composition

expand / minimize

[Ref.: #34923]

Culture medium

CIP Medium 90

[Ref.: #34923]

Culture medium growth

[Ref.: #34923]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #34923]		growth	37 °C
[Ref.: #34923]		growth	25-30 °C
[Ref.: #34923]	no	growth	10 °C
[Ref.: #34923]	no	growth	37 °C
[Ref.: #34923]	no	growth	41 °C
[Ref.: #34923]	no	growth	45 °C
[Ref.: #51495]		growth	37 °C

[Ref.: #34923]	Temperature range	mesophilic
[Ref.: #34923]	Temperature range	psychrophilic
[Ref.: #34923]	Temperature range	mesophilic
[Ref.: #34923]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #51495]	Oxygen tolerance	anaerobe
[Ref.: #51495]	Oxygen tolerance	microaerophile
[Ref.: #67771]	Oxygen tolerance	anaerobe
[Ref.: #34923]	Oxygen tolerance	facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #34923]		NaCl	no	growth	6.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #34923]	esculin ChEBI	-	hydrolysis
[Ref.: #34923]	hippurate ChEBI	-	hydrolysis
[Ref.: #34923]	nitrate ChEBI	-	reduction
[Ref.: #34923]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #34923]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #34923]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #34923]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #34923]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #34923]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #34923]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #34923]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #34923]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #34923]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #34923]	7781	-	-	+	+	-	+	-	-	-	+	+	+	-	-	-	-	-	+	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	90.91	20 of 22
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	threonine metabolism	70	7 of 10
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	purine metabolism	63.83	60 of 94
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	degradation of hexoses	61.11	11 of 18
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	pyrimidine metabolism	60	27 of 45
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	aspartate and asparagine metabolism	55.56	5 of 9
[Ref.: #66794]	phenylalanine metabolism	53.85	7 of 13
[Ref.: #66794]	non-pathway related	52.63	20 of 38
[Ref.: #66794]	oxidative phosphorylation	50.55	46 of 91
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	gluconeogenesis	50	4 of 8
[Ref.: #66794]	methionine metabolism	50	13 of 26
[Ref.: #66794]	cysteine metabolism	50	9 of 18
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	lipid metabolism	48.39	15 of 31
[Ref.: #66794]	glutamate and glutamine metabolism	46.43	13 of 28
[Ref.: #66794]	leucine metabolism	46.15	6 of 13
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	alanine metabolism	44.83	13 of 29
[Ref.: #66794]	d-mannose degradation	44.44	4 of 9
[Ref.: #66794]	NAD metabolism	44.44	8 of 18
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	mevalonate metabolism	42.86	3 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	42.86	6 of 14
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	degradation of pentoses	42.86	12 of 28
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	Entner Doudoroff pathway	40	4 of 10
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	starch degradation	40	4 of 10
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	urea cycle	38.46	5 of 13
[Ref.: #66794]	isoleucine metabolism	37.5	3 of 8
[Ref.: #66794]	arginine metabolism	37.5	9 of 24
[Ref.: #66794]	tryptophan metabolism	36.84	14 of 38
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	valine metabolism	33.33	3 of 9
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	propionate fermentation	30	3 of 10
[Ref.: #66794]	citric acid cycle	28.57	4 of 14
[Ref.: #66794]	ubiquinone biosynthesis	28.57	2 of 7
[Ref.: #66794]	histidine metabolism	27.59	8 of 29
[Ref.: #66794]	vitamin B6 metabolism	27.27	3 of 11
[Ref.: #66794]	flavin biosynthesis	26.67	4 of 15
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	butanoate fermentation	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	lysine metabolism	23.81	10 of 42
[Ref.: #66794]	isoprenoid biosynthesis	23.08	6 of 26
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	lipid A biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #51495]	Sample type/isolated from	Human spinal cord,removed at autopsy
[Ref.: #51495]	Geographic location (country and/or sea, region)	Colchester
[Ref.: #51495]	Country	United Kingdom
[Ref.: #51495]	Country ISO 3 Code	GBR
[Ref.: #51495]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From human spinal cord, removed at autopsy
[Ref.: #67771]	Geographic location (country and/or sea, region)	Colchester
[Ref.: #67771]	Country	United Kingdom
[Ref.: #67771]	Country ISO 3 Code	GBR
[Ref.: #67771]	Continent	Europe

[Ref.: #34923]	Sample type/isolated from	Human, Acute multiple sclerosis
[Ref.: #34923]	Geographic location (country and/or sea, region)	Colchester General Hospital
[Ref.: #34923]	Country	United Kingdom
[Ref.: #34923]	Country ISO 3 Code	GBR
[Ref.: #34923]	Continent	Europe
[Ref.: #34923]	Isolation date	1988

[Ref.: #34923]	Country	United Kingdom
[Ref.: #34923]	Country ISO 3 Code	GBR
[Ref.: #34923]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Organ	#Spinal Cord
#Host	#Human	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU395995 (>99% sequence identity) for Dolosigranulum pigrum subclade from Microbeatlas

Aquatic Samples	2385
Soil Samples	1684
Animal Samples	28449
Plant Samples	728
Total Samples	33246

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #34923]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Dolosigranulum pigrum strain 33929-06 16S ribosomal RNA gene, partial sequence	GU395995	1375	ENA	29394 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dolosigranulum pigrum ATCC 51524	GCA_000245815	scaffold	GenBank	883103 tax ID	*
[Ref.: #66792]	Dolosigranulum pigrum ATCC 51524	883103.3	wgs	PATRIC	883103 tax ID	*
[Ref.: #66792]	Dolosigranulum pigrum ATCC 51524	2513237341	draft	JGI IMG/M	883103 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dolosigranulum pigrum ATCC 51524 ATCC 51524 NCBI: GCA_000245815.1
[Ref.: #69480]	motile	no	91.5	no
[Ref.: #69480]	flagellated	no	96.961	no
[Ref.: #69480]	gram-positive	yes	91.831	yes
[Ref.: #69480]	anaerobic	no	90.037	no
[Ref.: #69480]	aerobic	no	96.091	yes
[Ref.: #69480]	halophile	yes	94.935	no
[Ref.: #69480]	spore-forming	no	93.296	no
[Ref.: #69480]	glucose-util	yes	89.365	no
[Ref.: #69480]	thermophile	no	96.644	no
[Ref.: #69480]	glucose-ferment	yes	86.92	no

Availability in culture collections External links

[Ref.: #34923]

Culture collection no.

CIP 104051, ATCC 51524, IFO 15550, NCFB 2975, LMG 19521, KCTC 15002, CCUG 33392, LMG 15126, NBRC 15550, NCIMB 702975

[Ref.: #93023]

SI-ID 8240

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phenotypic and phylogenetic characterization of some Gemella-like organisms from human infections: description of Dolosigranulum pigrum gen. nov., sp. nov.	Aguirre M, Morrison D, Cookson BD, Gay FW, Collins MD	J Appl Bacteriol	10.1111/j.1365-2672.1993.tb01602.x	1993	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#34923 Collection of Institut Pasteur ; Curators of the CIP; CIP 104051
#51495 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33392

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#93023

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID8240.1 )

* These data were automatically processed and therefore are not curated

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Dolosigranulum pigrum ATCC 51524 ATCC 51524

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